jgi.p|Nanoce1779_2|572049, mRNA_1424 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|572049
Unique Name	mRNA_1424
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1176
Alignment location	scaffold_1:517930..519105 +

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Properties


Property Name	Value
TranscriptId	572135
Track	FilteredModels2
ProteinId	572049

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:517930..519105 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572049	gene_1424	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572049	mRNA_1424-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1424	CDS_1424	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:517930..519105+
coding sequence from alignment at scaffold_1:517930..519105+

mRNA sequence

>mRNA_1424 ID=mRNA_1424|Name=jgi.p|Nanoce1779_2|572049|organism=Nannochloropsis oceanica|type=mRNA|length=1176bp
TTTATAGCCCCTAGTGAGCAGAGGGCGCCCTTCCAATGTGAATGTATGTT
ATAATAGCCTTAAATGCAGTATTGTTGTCTTTGGAGTGCTTTCTCTAGTC
AATACCATGTCTTTGGAATTACGCAAGCTCAAACATGCTTGCCGGAGAGA
CATGGCTCCCCTTCTCCCCCGGCCACCCAATCACTCACCCTCTCCTATTG
CATCAACATTTGTGAGAAAAAGAATTGTAATACACCTTTTTTTTATTTTT
TACTCCACTTATATTTACTCCCTTCGACCCACGTCCTGACTTTCGCAGTC
CTCGCACACCAACACAAGCTATAGCGATATATCCAGCTGGGGTCTCCAAG
AAGAAACTTCCCTTTTCCATCACATCACCTCGACGCACCCACAACACGTA
ATAAGACAGAGACTGTGTCTGTGACACACTCTGAAACTCACACACAATAC
AACCACTCGCACAGCAGCATGAAGTTGGTCACCATCGTAGCGCTTGTGTT
CTTCACCGCCCTCCCAAGAAGCAGCGCCTTTCTTTTCACAGTCCCCCACG
CCGCTGCTTCCTCTACTTCAGCCTCCCGCCTCGCGGCTGCCTCCTCCTCA
TCCCCGAAGCACCCCGAAGTGACCACTGAACTTATCAAGCACACCGCCAC
GCTTGCCCAGCTTCAATTCGATGAGGCTGAAATTTCAAGCCTTGTCCCGC
GGTTCGAAGCGTTCTTAAACTTTGTCGGCAAGATGCAAGATGTGCCCGAC
ACGACGGCCGGCCTAGCCCCTGGTAACATGCCCACAGTGGACAAGGTATT
GCGGCCCGATCAAGCTTCCATATTTCCTAACCAAGATGCCATTTTTGCCA
ACATGGCTGAGCAGGAGGATGCGTACTTGAGCGTGCCCAAGGTCGGGGAG
GAGGACACGTAGAGAAGGCGAGTACGAGGATGAAGAGGAGAGCAAGAAGG
TGGTGACTTTGAAGCTTGATTTCCCCTCGGCGATTAAATAAAAATATGAC
ACAAATGAAAAAATAAGGCAGAAGAAGGAGTGCGTCGCATAGAAAAACAC
ACACCTTCTCGTTCATTTTTGGGGTGATGATTGAAGGAGGCAGGAAGGGT
GTATCCAAGTGACGGCCCAGTCAGATACAACACAACACAGAAGATCCCAC
ACCAAAATCACCGTCTTCAGACACAC

protein sequence of jgi.p|Nanoce1779_2|572049

>mRNA_1424-protein ID=mRNA_1424-protein|Name=jgi.p|Nanoce1779_2|572049|organism=Nannochloropsis oceanica|type=polypeptide|length=148bp
MKLVTIVALVFFTALPRSSAFLFTVPHAAASSTSASRLAAASSSSPKHPE
VTTELIKHTATLAQLQFDEAEISSLVPRFEAFLNFVGKMQDVPDTTAGLA
PGNMPTVDKVLRPDQASIFPNQDAIFANMAEQEDAYLSVPKVGEEDT*

mRNA from alignment at scaffold_1:517930..519105+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1424 ID=mRNA_1424|Name=jgi.p|Nanoce1779_2|572049|organism=Nannochloropsis oceanica|type=mRNA|length=1176bp|location=Sequence derived from alignment at scaffold_1:517930..519105+ (Nannochloropsis oceanica)
TTTATAGCCCCTAGTGAGCAGAGGGCGCCCTTCCAATGTGAATGTATGTT
ATAATAGCCTTAAATGCAGTATTGTTGTCTTTGGAGTGCTTTCTCTAGTC
AATACCATGTCTTTGGAATTACGCAAGCTCAAACATGCTTGCCGGAGAGA
CATGGCTCCCCTTCTCCCCCGGCCACCCAATCACTCACCCTCTCCTATTG
CATCAACATTTGTGAGAAAAAGAATTGTAATACACCTTTTTTTTATTTTT
TACTCCACTTATATTTACTCCCTTCGACCCACGTCCTGACTTTCGCAGTC
CTCGCACACCAACACAAGCTATAGCGATATATCCAGCTGGGGTCTCCAAG
AAGAAACTTCCCTTTTCCATCACATCACCTCGACGCACCCACAACACGTA
ATAAGACAGAGACTGTGTCTGTGACACACTCTGAAACTCACACACAATAC
AACCACTCGCACAGCAGCATGAAGTTGGTCACCATCGTAGCGCTTGTGTT
CTTCACCGCCCTCCCAAGAAGCAGCGCCTTTCTTTTCACAGTCCCCCACG
CCGCTGCTTCCTCTACTTCAGCCTCCCGCCTCGCGGCTGCCTCCTCCTCA
TCCCCGAAGCACCCCGAAGTGACCACTGAACTTATCAAGCACACCGCCAC
GCTTGCCCAGCTTCAATTCGATGAGGCTGAAATTTCAAGCCTTGTCCCGC
GGTTCGAAGCGTTCTTAAACTTTGTCGGCAAGATGCAAGATGTGCCCGAC
ACGACGGCCGGCCTAGCCCCTGGTAACATGCCCACAGTGGACAAGGTATT
GCGGCCCGATCAAGCTTCCATATTTCCTAACCAAGATGCCATTTTTGCCA
ACATGGCTGAGCAGGAGGATGCGTACTTGAGCGTGCCCAAGGTCGGGGAG
GAGGACACGTAGAGAAGGCGAGTACGAGGATGAAGAGGAGAGCAAGAAGG
TGGTGACTTTGAAGCTTGATTTCCCCTCGGCGATTAAATAAAAATATGAC
ACAAATGAAAAAATAAGGCAGAAGAAGGAGTGCGTCGCATAGAAAAACAC
ACACCTTCTCGTTCATTTTTGGGGTGATGATTGAAGGAGGCAGGAAGGGT
GTATCCAAGTGACGGCCCAGTCAGATACAACACAACACAGAAGATCCCAC
ACCAAAATCACCGTCTTCAGACACAC

Coding sequence (CDS) from alignment at scaffold_1:517930..519105+

>mRNA_1424 ID=mRNA_1424|Name=jgi.p|Nanoce1779_2|572049|organism=Nannochloropsis oceanica|type=CDS|length=444bp|location=Sequence derived from alignment at scaffold_1:517930..519105+ (Nannochloropsis oceanica)
ATGAAGTTGGTCACCATCGTAGCGCTTGTGTTCTTCACCGCCCTCCCAAG
AAGCAGCGCCTTTCTTTTCACAGTCCCCCACGCCGCTGCTTCCTCTACTT
CAGCCTCCCGCCTCGCGGCTGCCTCCTCCTCATCCCCGAAGCACCCCGAA
GTGACCACTGAACTTATCAAGCACACCGCCACGCTTGCCCAGCTTCAATT
CGATGAGGCTGAAATTTCAAGCCTTGTCCCGCGGTTCGAAGCGTTCTTAA
ACTTTGTCGGCAAGATGCAAGATGTGCCCGACACGACGGCCGGCCTAGCC
CCTGGTAACATGCCCACAGTGGACAAGGTATTGCGGCCCGATCAAGCTTC
CATATTTCCTAACCAAGATGCCATTTTTGCCAACATGGCTGAGCAGGAGG
ATGCGTACTTGAGCGTGCCCAAGGTCGGGGAGGAGGACACGTAG

Synonyms

Publications