jgi.p|Nanoce1779_2|572048, mRNA_1423 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|572048
Unique Name	mRNA_1423
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1982
Alignment location	scaffold_1:515240..517499 -

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Properties


Property Name	Value
TranscriptId	572134
Track	FilteredModels2
ProteinId	572048

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:515240..517499 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572048	gene_1423	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572048	mRNA_1423-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1423	CDS_1423	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:515240..517499-
coding sequence from alignment at scaffold_1:515240..517499-

mRNA sequence

>mRNA_1423 ID=mRNA_1423|Name=jgi.p|Nanoce1779_2|572048|organism=Nannochloropsis oceanica|type=mRNA|length=1982bp
ACAGGCCGCCATCGATTCCACGTGGGGCGTGGGTCCGACACGAACATATC
CCGCAACATCGACGCGCGTACATCAGCAAGCACTATCCCACTCATCACGC
CAAGCCATGACGTTCTCTTCTAGCCCCCGCCGCTGCCACCTGCCTTTGAT
GGCCTCCGCCTGCACGGTACTTCTTCTCCTCCAATCCCTCGAAACAACCA
CCGCAAAAATCGTCTCGGGCCAAGCCACACTCAGCAACCATACTTCATGG
ATGTATCTGACCAAATTTTCGTACTCCCAAGGTTCGGGGAACTTCACCTT
GGACGTCAAGGCGGCCAGCCAACAAAATGCAAAAAAGGCTTCTTTTGGCA
TGTCCGACGGCGCCCGTTTCTTCCTCTACCTCGATGAAGACTGGGAGGAC
GCCGTGGCCGCCCCCACCTGTCACGAACGCCTCAAATACGCCAAATGGCA
GTCAGGCTCCCTCCGGAACGGACCCCCCCTAAAGCACGCGGTCAGTCAAA
GCATTCGACCTCATTTTTGGTACTTCGTCCTAGCAGACTGTGACGTTGCA
CAAGACCAAGCCCCTTCTGTGTTAAATTACCGCTTGGAGATGTACAATGC
GGATGGCTCCCATTTCTCGCACGAAGAGAAGGCGCCCTCCCGTCTCTTGC
CTGTCTTGACCGTGGCGTTCGTTTTATCGATGATTCCGCTGTTGTGTCTC
CTGCAGAATTACCGAAATGCAACGCGTGGACAGAAGTTGCACCCGTCGAT
CTTGCATTTGGGCGTGGCGGTGCTATTGTTTTTGTGCAGCTTGGTGTTGG
AGACGATCAATTACTGGGTGTATGCGAAGAATGGACAGGGGTTAAGGCTG
ACGGATATCGGGGCAGAGCTTGCAAACTGGTTAGCACAGCTGGTGGTGAG
TTTGGAGTTGTTGAGCATTGCGTGGGTTTGGAGTGTGGATACGGTCTTGA
CCCCGTCGAGGAAGCAAAGGGCAGGGAGGGCGACGATGTACCGGATGATC
GGGGGCTTGGTCATATTGCATGTCGCGTGCGTGTTGCTAGGGCGGGTGTA
TGACGATGCACATTCGAAGTACCATGAAAGTGAGACAATTTGGGCGTTGG
GTTTGATTGGGATGCGGTTGATTTTGGGAGGCTTGTTTGCGGCTGGCGTC
CATAATCTGTTGGTCCGGGAGAACAACTTGATACAGCGCACGTTTTTGAC
GCGGCTGGCGGCGTTGGGAGGGATCTATTTTGTGAGTATTCCGGTTGTGA
TCACTGTGGCGTCGACGTTTTTTGCACGGTATTTGAGGCATCAAGTCGTG
ACGGTGGGCTCGGCGGCGGTGCAGGTGTTCTCGTTGCTGGGGTTGTCGAT
TTTGCTGCTGACGAGGAACGAGTATACGGAGTTGGCAAGCTTGTCTAGTT
GTTCCTTGCCGGCGTCGATAAAACTGGCCTAAAGCAATAGAGTGGGAGAG
GCGCGTAGAAAAAGATAGGAGGAAAGTATGAGGAGGGCCTTATGCATAAG
TAGTAACTAACACTCAAAATATTAGCTGAGGAGGTCGGTGCTGGTTGCGA
GGGAGCGGAGGAGAAAAAGGAAGAAGATGAAGGAGAAGAAGAGAGGAGGA
GAATATGAAGGTGCACCAACATGTCATTGCTTTATCTCTTATACGGATTG
AGAGTGGAACGTTACGGATGGTGAGTGTCTGCTGCTTGGGCCGCTCACCG
GCTTATGCGTAGCGGGATGTGATGAGTAAAAGGGGTTCCGGATTCTTTTC
ACTTGTTGAAGGTGAGAATGTATATGTATTGATAGACGTTCAATCACGAG
ATATTATATACATATATAATGTCTTTCGTTGGATAATGTGAGATAAGAAT
GTCGAAGAGGCATTGCCCGGGTGAAAGCAAGGGCACCGGTGGGGAGAGTT
GTGAGAGTCAGTGCTGCGACAGCCAAAAACACGATAGACAGTTTTTATAA
ACAGAAAATTGCAACAAAGGAAAAAAAAGAAA

protein sequence of jgi.p|Nanoce1779_2|572048

>mRNA_1423-protein ID=mRNA_1423-protein|Name=jgi.p|Nanoce1779_2|572048|organism=Nannochloropsis oceanica|type=polypeptide|length=442bp
MTFSSSPRRCHLPLMASACTVLLLLQSLETTTAKIVSGQATLSNHTSWMY
LTKFSYSQGSGNFTLDVKAASQQNAKKASFGMSDGARFFLYLDEDWEDAV
AAPTCHERLKYAKWQSGSLRNGPPLKHAVSQSIRPHFWYFVLADCDVAQD
QAPSVLNYRLEMYNADGSHFSHEEKAPSRLLPVLTVAFVLSMIPLLCLLQ
NYRNATRGQKLHPSILHLGVAVLLFLCSLVLETINYWVYAKNGQGLRLTD
IGAELANWLAQLVVSLELLSIAWVWSVDTVLTPSRKQRAGRATMYRMIGG
LVILHVACVLLGRVYDDAHSKYHESETIWALGLIGMRLILGGLFAAGVHN
LLVRENNLIQRTFLTRLAALGGIYFVSIPVVITVASTFFARYLRHQVVTV
GSAAVQVFSLLGLSILLLTRNEYTELASLSSCSLPASIKLA*

mRNA from alignment at scaffold_1:515240..517499-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1423 ID=mRNA_1423|Name=jgi.p|Nanoce1779_2|572048|organism=Nannochloropsis oceanica|type=mRNA|length=2260bp|location=Sequence derived from alignment at scaffold_1:515240..517499- (Nannochloropsis oceanica)
ACAGGCCGCCATCGATTCCACGTGGGGCGTGGGTCCGACACGAACATATC
CCGCAACATCGACGCGCGTACATCAGCAAGCACTATCCCACTCATCACGC
CAAGCCATGACGTTCTCTTCTAGCCCCCGCCGCTGCCACCTGCCTTTGAT
GGCCTCCGCCTGCACGGTACTTCTTCTCCTCCAATCCCTCGAAACAACCA
CCGCAAAAATCGTCTCGGGCCAAGCCACACTCAGCAACCATACTTCATGG
ATGTATCTGACCAAATTTTCGTACTCCCAAGGTTCGGGGAACTTCACCTT
GGACGTCAAGGCGGCCAGCGTAAGTGATAGAGTTGGGATGGGTGGGTGGG
AGGGAGGAAGAGGACGGGCATGAAGGGACAAATAGGACAACGAGAACAGG
AGACATGGTTGAAAGCAACTTTCGTGTCCCTATACATGGGACGGATGGTT
GTAGAGGAAAAACCCACGAACACACGTCTGCATTCCCGTCGTACCTCCTT
GCCAGGCGCTATCAGTCACTTTAATTTTAAACAAACGGCAAAAGCTCTCA
TCCCAATCCCTCCCTTCCTCTCGCCTTTCCTCCTCGTTCCATAACAGCAA
CAAAATGCAAAAAAGGCTTCTTTTGGCATGTCCGACGGCGCCCGTTTCTT
CCTCTACCTCGATGAAGACTGGGAGGACGCCGTGGCCGCCCCCACCTGTC
ACGAACGCCTCAAATACGCCAAATGGCAGTCAGGCTCCCTCCGGAACGGA
CCCCCCCTAAAGCACGCGGTCAGTCAAAGCATTCGACCTCATTTTTGGTA
CTTCGTCCTAGCAGACTGTGACGTTGCACAAGACCAAGCCCCTTCTGTGT
TAAATTACCGCTTGGAGATGTACAATGCGGATGGCTCCCATTTCTCGCAC
GAAGAGAAGGCGCCCTCCCGTCTCTTGCCTGTCTTGACCGTGGCGTTCGT
TTTATCGATGATTCCGCTGTTGTGTCTCCTGCAGAATTACCGAAATGCAA
CGCGTGGACAGAAGTTGCACCCGTCGATCTTGCATTTGGGCGTGGCGGTG
CTATTGTTTTTGTGCAGCTTGGTGTTGGAGACGATCAATTACTGGGTGTA
TGCGAAGAATGGACAGGGGTTAAGGCTGACGGATATCGGGGCAGAGCTTG
CAAACTGGTTAGCACAGCTGGTGGTGAGTTTGGAGTTGTTGAGCATTGCG
TGGGTTTGGAGTGTGGATACGGTCTTGACCCCGTCGAGGAAGCAAAGGGC
AGGGAGGGCGACGATGTACCGGATGATCGGGGGCTTGGTCATATTGCATG
TCGCGTGCGTGTTGCTAGGGCGGGTGTATGACGATGCACATTCGAAGTAC
CATGAAAGTGAGACAATTTGGGCGTTGGGTTTGATTGGGATGCGGTTGAT
TTTGGGAGGCTTGTTTGCGGCTGGCGTCCATAATCTGTTGGTCCGGGAGA
ACAACTTGATACAGCGCACGTTTTTGACGCGGCTGGCGGCGTTGGGAGGG
ATCTATTTTGTGAGTATTCCGGTTGTGATCACTGTGGCGTCGACGTTTTT
TGCACGGTATTTGAGGCATCAAGTCGTGACGGTGGGCTCGGCGGCGGTGC
AGGTGTTCTCGTTGCTGGGGTTGTCGATTTTGCTGCTGACGAGGAACGAG
TATACGGAGTTGGCAAGCTTGTCTAGTTGTTCCTTGCCGGCGTCGATAAA
ACTGGCCTAAAGCAATAGAGTGGGAGAGGCGCGTAGAAAAAGATAGGAGG
AAAGTATGAGGAGGGCCTTATGCATAAGTAGTAACTAACACTCAAAATAT
TAGCTGAGGAGGTCGGTGCTGGTTGCGAGGGAGCGGAGGAGAAAAAGGAA
GAAGATGAAGGAGAAGAAGAGAGGAGGAGAATATGAAGGTGCACCAACAT
GTCATTGCTTTATCTCTTATACGGATTGAGAGTGGAACGTTACGGATGGT
GAGTGTCTGCTGCTTGGGCCGCTCACCGGCTTATGCGTAGCGGGATGTGA
TGAGTAAAAGGGGTTCCGGATTCTTTTCACTTGTTGAAGGTGAGAATGTA
TATGTATTGATAGACGTTCAATCACGAGATATTATATACATATATAATGT
CTTTCGTTGGATAATGTGAGATAAGAATGTCGAAGAGGCATTGCCCGGGT
GAAAGCAAGGGCACCGGTGGGGAGAGTTGTGAGAGTCAGTGCTGCGACAG
CCAAAAACACGATAGACAGTTTTTATAAACAGAAAATTGCAACAAAGGAA
AAAAAAGAAA

Coding sequence (CDS) from alignment at scaffold_1:515240..517499-

>mRNA_1423 ID=mRNA_1423|Name=jgi.p|Nanoce1779_2|572048|organism=Nannochloropsis oceanica|type=CDS|length=2652bp|location=Sequence derived from alignment at scaffold_1:515240..517499- (Nannochloropsis oceanica)
CAACAAAATGCAAAAAAGGCTTCTTTTGGCATGTCCGACGGCGCCCGTTT
CTTCCTCTACCTCGATGAAGACTGGGAGGACGCCGTGGCCGCCCCCACCT
GTCACGAACGCCTCAAATACGCCAAATGGCAGTCAGGCTCCCTCCGGAAC
GGACCCCCCCTAAAGCACGCGGTCAGTCAAAGCATTCGACCTCATTTTTG
GTACTTCGTCCTAGCAGACTGTGACGTTGCACAAGACCAAGCCCCTTCTG
TGTTAAATTACCGCTTGGAGATGTACAATGCGGATGGCTCCCATTTCTCG
CACGAAGAGAAGGCGCCCTCCCGTCTCTTGCCTGTCTTGACCGTGGCGTT
CGTTTTATCGATGATTCCGCTGTTGTGTCTCCTGCAGAATTACCGAAATG
CAACGCGTGGACAGAAGTTGCACCCGTCGATCTTGCATTTGGGCGTGGCG
GTGCTATTGTTTTTGTGCAGCTTGGTGTTGGAGACGATCAATTACTGGGT
GTATGCGAAGAATGGACAGGGGTTAAGGCTGACGGATATCGGGGCAGAGC
TTGCAAACTGGTTAGCACAGCTGGTGGTGAGTTTGGAGTTGTTGAGCATT
GCGTGGGTTTGGAGTGTGGATACGGTCTTGACCCCGTCGAGGAAGCAAAG
GGCAGGGAGGGCGACGATGTACCGGATGATCGGGGGCTTGGTCATATTGC
ATGTCGCGTGCGTGTTGCTAGGGCGGGTGTATGACGATGCACATTCGAAG
TACCATGAAAGTGAGACAATTTGGGCGTTGGGTTTGATTGGGATGCGGTT
GATTTTGGGAGGCTTGTTTGCGGCTGGCGTCCATAATCTGTTGGTCCGGG
AGAACAACTTGATACAGCGCACGTTTTTGACGCGGCTGGCGGCGTTGGGA
GGGATCTATTTTGTGAGTATTCCGGTTGTGATCACTGTGGCGTCGACGTT
TTTTGCACGGTATTTGAGGCATCAAGTCGTGACGGTGGGCTCGGCGGCGG
TGCAGGTGTTCTCGTTGCTGGGGTTGTCGATTTTGCTGCTGACGAGGAAC
GAGTATACGGAGTTGGCAAGCTTGTCTAGTTGTTCCTTGCCGGCGTCGAT
AAAACTGGCCTAAATGACGTTCTCTTCTAGCCCCCGCCGCTGCCACCTGC
CTTTGATGGCCTCCGCCTGCACGGTACTTCTTCTCCTCCAATCCCTCGAA
ACAACCACCGCAAAAATCGTCTCGGGCCAAGCCACACTCAGCAACCATAC
TTCATGGATGTATCTGACCAAATTTTCGTACTCCCAAGGTTCGGGGAACT
TCACCTTGGACGTCAAGGCGGCCAGCCAACAAAATGCAAAAAAGGCTTCT
TTTGGCATGTCCGACGGCGCCCGTTTCTTCCTCTACCTCGATGAAGACTG
GGAGGACGCCGTGGCCGCCCCCACCTGTCACGAACGCCTCAAATACGCCA
AATGGCAGTCAGGCTCCCTCCGGAACGGACCCCCCCTAAAGCACGCGGTC
AGTCAAAGCATTCGACCTCATTTTTGGTACTTCGTCCTAGCAGACTGTGA
CGTTGCACAAGACCAAGCCCCTTCTGTGTTAAATTACCGCTTGGAGATGT
ACAATGCGGATGGCTCCCATTTCTCGCACGAAGAGAAGGCGCCCTCCCGT
CTCTTGCCTGTCTTGACCGTGGCGTTCGTTTTATCGATGATTCCGCTGTT
GTGTCTCCTGCAGAATTACCGAAATGCAACGCGTGGACAGAAGTTGCACC
CGTCGATCTTGCATTTGGGCGTGGCGGTGCTATTGTTTTTGTGCAGCTTG
GTGTTGGAGACGATCAATTACTGGGTGTATGCGAAGAATGGACAGGGGTT
AAGGCTGACGGATATCGGGGCAGAGCTTGCAAACTGGTTAGCACAGCTGG
TGGTGAGTTTGGAGTTGTTGAGCATTGCGTGGGTTTGGAGTGTGGATACG
GTCTTGACCCCGTCGAGGAAGCAAAGGGCAGGGAGGGCGACGATGTACCG
GATGATCGGGGGCTTGGTCATATTGCATGTCGCGTGCGTGTTGCTAGGGC
GGGTGTATGACGATGCACATTCGAAGTACCATGAAAGTGAGACAATTTGG
GCGTTGGGTTTGATTGGGATGCGGTTGATTTTGGGAGGCTTGTTTGCGGC
TGGCGTCCATAATCTGTTGGTCCGGGAGAACAACTTGATACAGCGCACGT
TTTTGACGCGGCTGGCGGCGTTGGGAGGGATCTATTTTGTGAGTATTCCG
GTTGTGATCACTGTGGCGTCGACGTTTTTTGCACGGTATTTGAGGCATCA
AGTCGTGACGGTGGGCTCGGCGGCGGTGCAGGTGTTCTCGTTGCTGGGGT
TGTCGATTTTGCTGCTGACGAGGAACGAGTATACGGAGTTGGCAAGCTTG
TCTAGTTGTTCCTTGCCGGCGTCGATAAAACTGGCCTAAATGACGTTCTC
TTCTAGCCCCCGCCGCTGCCACCTGCCTTTGATGGCCTCCGCCTGCACGG
TACTTCTTCTCCTCCAATCCCTCGAAACAACCACCGCAAAAATCGTCTCG
GGCCAAGCCACACTCAGCAACCATACTTCATGGATGTATCTGACCAAATT
TTCGTACTCCCAAGGTTCGGGGAACTTCACCTTGGACGTCAAGGCGGCCA
GC

Synonyms

Publications