jgi.p|Nanoce1779_2|572037, mRNA_1421 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572037
Unique NamemRNA_1421
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1026
Alignment locationscaffold_1:510625..511650 -

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Properties
Property NameValue
TranscriptId572123
TrackFilteredModels2
ProteinId572037
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:510625..511650 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572037gene_1421Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572037mRNA_1421-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1421CDS_1421Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1421 ID=mRNA_1421|Name=jgi.p|Nanoce1779_2|572037|organism=Nannochloropsis oceanica|type=mRNA|length=1026bp
CAGCAGTTAACGTACTACCCTGGCACTTCAGGACGCTTCATACATCCTCC
TCCACAATGCTATCGAGCCAAAGAAGGAGTGGAGGCGCACTTTATCCGCG
CACTATCCGCCGCTGGCCAATGAGCCTCCTCGGGTTGCTGTTGATGTTGG
CCGGCGCTGGCTGCTGCATTCAAGCATTCATCCTGCCCTTACCGCGACGG
CCAAAAGTGGGACTTCTGCAACTACATCGTCAACATCCCTGCCGACAACG
CGGCGCACTCTTTGCCTCGACTACTCAAGAACCGGGAAGCGACGCACCAG
CAGACTCAATCAGCCCAACCCCCAGCACCCTGGCCTCAAACGCTGTTACT
CCAAGCGGCAAGGGCTTTGGCACCGCGCCGCCACCAGTCGCGCGAGCTAA
AACTGGCACGGTTAACAAACGATTAATGAACGTGATTGATGCTGAGCTAA
AGGTGGTACGCGACAACCAACCAGAAGAAGCCACGCCCCTTTCGGAAGAC
GACACGGATCTCAATGGCATCAATCCCATCCAACCCTTGGGTGCTGCTGT
CTTTGCCGCCTTTATTTCCTTCTTGTTCTGGCGTATTACTTTCGGTCTTG
CCAATACCTTAAATAATGTGCATCTGGACACGGACTTCTATCCGGCCAAG
CGGGTGTTCGGAATTGCGTCGACTGCCTTTGTGGGCATCACGGCATTGGG
GGCTGGTGTTATTGGCGTGACTGCGATTGGTCTATTAGGCTTGACTGTAC
GCGTTATGTATGGAATTATCACGGGGGAATTGGACATGAATAAGAAGAAG
TACGTGCCACCGGTGAATACTAGCTCGGTGCCTCTGGACTCGAATGGATT
GCCCAAGATTACCGGGGCGTGGTATGATATCAAGGCGCCAGTCAAGGCGC
CAGCGGAGGAGACGAAAGAGTAAAGGGATAGAGGTTTTTGTGTGTGGATA
TGTTTTGAGTGATTAAGGTGATGGTGCTGCTGGGTAGGAGAATGGGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAG
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protein sequence of jgi.p|Nanoce1779_2|572037

>mRNA_1421-protein ID=mRNA_1421-protein|Name=jgi.p|Nanoce1779_2|572037|organism=Nannochloropsis oceanica|type=polypeptide|length=289bp
MLSSQRRSGGALYPRTIRRWPMSLLGLLLMLAGAGCCIQAFILPLPRRPK
VGLLQLHRQHPCRQRGALFASTTQEPGSDAPADSISPTPSTLASNAVTPS
GKGFGTAPPPVARAKTGTVNKRLMNVIDAELKVVRDNQPEEATPLSEDDT
DLNGINPIQPLGAAVFAAFISFLFWRITFGLANTLNNVHLDTDFYPAKRV
FGIASTAFVGITALGAGVIGVTAIGLLGLTVRVMYGIITGELDMNKKKYV
PPVNTSSVPLDSNGLPKITGAWYDIKAPVKAPAEETKE*
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mRNA from alignment at scaffold_1:510625..511650-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1421 ID=mRNA_1421|Name=jgi.p|Nanoce1779_2|572037|organism=Nannochloropsis oceanica|type=mRNA|length=1026bp|location=Sequence derived from alignment at scaffold_1:510625..511650- (Nannochloropsis oceanica)
CAGCAGTTAACGTACTACCCTGGCACTTCAGGACGCTTCATACATCCTCC
TCCACAATGCTATCGAGCCAAAGAAGGAGTGGAGGCGCACTTTATCCGCG
CACTATCCGCCGCTGGCCAATGAGCCTCCTCGGGTTGCTGTTGATGTTGG
CCGGCGCTGGCTGCTGCATTCAAGCATTCATCCTGCCCTTACCGCGACGG
CCAAAAGTGGGACTTCTGCAACTACATCGTCAACATCCCTGCCGACAACG
CGGCGCACTCTTTGCCTCGACTACTCAAGAACCGGGAAGCGACGCACCAG
CAGACTCAATCAGCCCAACCCCCAGCACCCTGGCCTCAAACGCTGTTACT
CCAAGCGGCAAGGGCTTTGGCACCGCGCCGCCACCAGTCGCGCGAGCTAA
AACTGGCACGGTTAACAAACGATTAATGAACGTGATTGATGCTGAGCTAA
AGGTGGTACGCGACAACCAACCAGAAGAAGCCACGCCCCTTTCGGAAGAC
GACACGGATCTCAATGGCATCAATCCCATCCAACCCTTGGGTGCTGCTGT
CTTTGCCGCCTTTATTTCCTTCTTGTTCTGGCGTATTACTTTCGGTCTTG
CCAATACCTTAAATAATGTGCATCTGGACACGGACTTCTATCCGGCCAAG
CGGGTGTTCGGAATTGCGTCGACTGCCTTTGTGGGCATCACGGCATTGGG
GGCTGGTGTTATTGGCGTGACTGCGATTGGTCTATTAGGCTTGACTGTAC
GCGTTATGTATGGAATTATCACGGGGGAATTGGACATGAATAAGAAGAAG
TACGTGCCACCGGTGAATACTAGCTCGGTGCCTCTGGACTCGAATGGATT
GCCCAAGATTACCGGGGCGTGGTATGATATCAAGGCGCCAGTCAAGGCGC
CAGCGGAGGAGACGAAAGAGTAAAGGGATAGAGGTTTTTGTGTGTGGATA
TGTTTTGAGTGATTAAGGTGATGGTGCTGCTGGGTAGGAGAATGGGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAG
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Coding sequence (CDS) from alignment at scaffold_1:510625..511650-

>mRNA_1421 ID=mRNA_1421|Name=jgi.p|Nanoce1779_2|572037|organism=Nannochloropsis oceanica|type=CDS|length=867bp|location=Sequence derived from alignment at scaffold_1:510625..511650- (Nannochloropsis oceanica)
ATGCTATCGAGCCAAAGAAGGAGTGGAGGCGCACTTTATCCGCGCACTAT
CCGCCGCTGGCCAATGAGCCTCCTCGGGTTGCTGTTGATGTTGGCCGGCG
CTGGCTGCTGCATTCAAGCATTCATCCTGCCCTTACCGCGACGGCCAAAA
GTGGGACTTCTGCAACTACATCGTCAACATCCCTGCCGACAACGCGGCGC
ACTCTTTGCCTCGACTACTCAAGAACCGGGAAGCGACGCACCAGCAGACT
CAATCAGCCCAACCCCCAGCACCCTGGCCTCAAACGCTGTTACTCCAAGC
GGCAAGGGCTTTGGCACCGCGCCGCCACCAGTCGCGCGAGCTAAAACTGG
CACGGTTAACAAACGATTAATGAACGTGATTGATGCTGAGCTAAAGGTGG
TACGCGACAACCAACCAGAAGAAGCCACGCCCCTTTCGGAAGACGACACG
GATCTCAATGGCATCAATCCCATCCAACCCTTGGGTGCTGCTGTCTTTGC
CGCCTTTATTTCCTTCTTGTTCTGGCGTATTACTTTCGGTCTTGCCAATA
CCTTAAATAATGTGCATCTGGACACGGACTTCTATCCGGCCAAGCGGGTG
TTCGGAATTGCGTCGACTGCCTTTGTGGGCATCACGGCATTGGGGGCTGG
TGTTATTGGCGTGACTGCGATTGGTCTATTAGGCTTGACTGTACGCGTTA
TGTATGGAATTATCACGGGGGAATTGGACATGAATAAGAAGAAGTACGTG
CCACCGGTGAATACTAGCTCGGTGCCTCTGGACTCGAATGGATTGCCCAA
GATTACCGGGGCGTGGTATGATATCAAGGCGCCAGTCAAGGCGCCAGCGG
AGGAGACGAAAGAGTAA
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Synonyms
Publications