jgi.p|Nanoce1779_2|572036, mRNA_1420 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572036
Unique NamemRNA_1420
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1382
Alignment locationscaffold_1:508994..510375 +

Link to JBrowse

Properties
Property NameValue
TranscriptId572122
TrackFilteredModels2
ProteinId572036
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:508994..510375 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572036gene_1420Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572036mRNA_1420-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1420CDS_1420Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1420 ID=mRNA_1420|Name=jgi.p|Nanoce1779_2|572036|organism=Nannochloropsis oceanica|type=mRNA|length=1382bp
ACAGGCTCAACTGGGCTTTCTCGCCTTGAGTCGCCCTTTTACTACAGACA
AGCACTCAATAAATCTACCACAGTCCATGAGAACCCCCGCCAACGCTTCC
GTCCACACATCCACGCTCCTGCTGCTGTTCGTACTCGTGCTGCTGCCCAT
CTTCCCCCTCACCCAGGCTTTTATCCCTCTTTTGAGCATGGATCACCTTC
ATCAGCAGCAACGGTCCCCGCCAGCCTGTGCCTCCCCGCCACCCTGCGCT
TCCACTCCCATCTTCTACTCCGGGGGTGGCTTCAAACTGGCCGCAGCCGC
TGCCGAGGTTGGCGGTCACGAGGAGGCTGTCAGCACATCCGCGCGCTTAA
CCTGGGGGGTCCCCTCCATCACTCATACTCCCAATGAGGCAACCGCAACC
TCTTTCCCCACTTCCTCCCCCCCCACTGCCTCCACCCACACCGGCCACGG
CGCCCTGGCAAGCACCACCACAGCGGATGTCATGTCCTTGGACAGCATCC
GTAGCACCTTGATTCGACAGGAAGATTCCATCATCTTTGCCCTGATCGAA
CGCGCTCAATTCCGTCGCAACGAGGCCATCTACCTTAAAGGCATTCTGCA
ACTCGACCCTTCCATCCCGGACTACACCTTCCTCAACTCCCTCTCCTTCC
TCGAATATCTCCTACTAGAAACCGAAAAATTACACGGGAAAGTCCGTCGT
TACACGAGCCCAGAAGAGCATGCATTCTTTCCCGAGCACCTGCCCAACCC
AATCCTCACGCCTCTGCAATTCCCAGCGTTGCTCGCCCCGAACACAGTAG
ATGTGAACGCCCAAATCCTCGATTTATATATCAATGAGATTGTCTCCGCT
GTGTGCAAGGAAGGGGATGATGAGCAGCATGGCTCGTCCGTTCTAGCCGA
CATCACGTTATTGCAGGCCATATCCCGTCGGATCCACTTGGGAAAATTCG
TGGCGGAGGCCAAATTTCTAGAAAGTGAGGCTCGCTACCGTGCGCTTGTG
GCTGCTGATGATGTCGATGGGGTCATGGCTTTGCTGACCAACACGGCGGT
AGAAGCCCGAGTGTTGGAACGGGCCAAGCTGAAGGCGAGCACGTACGGGC
AGGACATCACAGGCGAGACGGAGGAGTGCAAAGTCGAGCCTGACGTCATT
GCGGCCATCTACCGGGATATCATCATTCCGTTAACCAAGGATGTGGAGGT
ATTATATTTGTTTGAGAGGGTAGGAAGGCCCATCCCTTTCCCTTTGCCGG
CGCCTGCGGAAGAGTATAGGTTGAGAATCAGGGGGAGTAGGATATGAGGG
AGGGAGTGTGTGAGGGCGGGACAGGGATGGAGGGGTTGTGATGATGATAA
AAAGCAAATAAAGTACATAGCGTCTATACGTG
back to top

protein sequence of jgi.p|Nanoce1779_2|572036

>mRNA_1420-protein ID=mRNA_1420-protein|Name=jgi.p|Nanoce1779_2|572036|organism=Nannochloropsis oceanica|type=polypeptide|length=407bp
MRTPANASVHTSTLLLLFVLVLLPIFPLTQAFIPLLSMDHLHQQQRSPPA
CASPPPCASTPIFYSGGGFKLAAAAAEVGGHEEAVSTSARLTWGVPSITH
TPNEATATSFPTSSPPTASTHTGHGALASTTTADVMSLDSIRSTLIRQED
SIIFALIERAQFRRNEAIYLKGILQLDPSIPDYTFLNSLSFLEYLLLETE
KLHGKVRRYTSPEEHAFFPEHLPNPILTPLQFPALLAPNTVDVNAQILDL
YINEIVSAVCKEGDDEQHGSSVLADITLLQAISRRIHLGKFVAEAKFLES
EARYRALVAADDVDGVMALLTNTAVEARVLERAKLKASTYGQDITGETEE
CKVEPDVIAAIYRDIIIPLTKDVEVLYLFERVGRPIPFPLPAPAEEYRLR
IRGSRI*
back to top

mRNA from alignment at scaffold_1:508994..510375+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1420 ID=mRNA_1420|Name=jgi.p|Nanoce1779_2|572036|organism=Nannochloropsis oceanica|type=mRNA|length=1382bp|location=Sequence derived from alignment at scaffold_1:508994..510375+ (Nannochloropsis oceanica)
ACAGGCTCAACTGGGCTTTCTCGCCTTGAGTCGCCCTTTTACTACAGACA
AGCACTCAATAAATCTACCACAGTCCATGAGAACCCCCGCCAACGCTTCC
GTCCACACATCCACGCTCCTGCTGCTGTTCGTACTCGTGCTGCTGCCCAT
CTTCCCCCTCACCCAGGCTTTTATCCCTCTTTTGAGCATGGATCACCTTC
ATCAGCAGCAACGGTCCCCGCCAGCCTGTGCCTCCCCGCCACCCTGCGCT
TCCACTCCCATCTTCTACTCCGGGGGTGGCTTCAAACTGGCCGCAGCCGC
TGCCGAGGTTGGCGGTCACGAGGAGGCTGTCAGCACATCCGCGCGCTTAA
CCTGGGGGGTCCCCTCCATCACTCATACTCCCAATGAGGCAACCGCAACC
TCTTTCCCCACTTCCTCCCCCCCCACTGCCTCCACCCACACCGGCCACGG
CGCCCTGGCAAGCACCACCACAGCGGATGTCATGTCCTTGGACAGCATCC
GTAGCACCTTGATTCGACAGGAAGATTCCATCATCTTTGCCCTGATCGAA
CGCGCTCAATTCCGTCGCAACGAGGCCATCTACCTTAAAGGCATTCTGCA
ACTCGACCCTTCCATCCCGGACTACACCTTCCTCAACTCCCTCTCCTTCC
TCGAATATCTCCTACTAGAAACCGAAAAATTACACGGGAAAGTCCGTCGT
TACACGAGCCCAGAAGAGCATGCATTCTTTCCCGAGCACCTGCCCAACCC
AATCCTCACGCCTCTGCAATTCCCAGCGTTGCTCGCCCCGAACACAGTAG
ATGTGAACGCCCAAATCCTCGATTTATATATCAATGAGATTGTCTCCGCT
GTGTGCAAGGAAGGGGATGATGAGCAGCATGGCTCGTCCGTTCTAGCCGA
CATCACGTTATTGCAGGCCATATCCCGTCGGATCCACTTGGGAAAATTCG
TGGCGGAGGCCAAATTTCTAGAAAGTGAGGCTCGCTACCGTGCGCTTGTG
GCTGCTGATGATGTCGATGGGGTCATGGCTTTGCTGACCAACACGGCGGT
AGAAGCCCGAGTGTTGGAACGGGCCAAGCTGAAGGCGAGCACGTACGGGC
AGGACATCACAGGCGAGACGGAGGAGTGCAAAGTCGAGCCTGACGTCATT
GCGGCCATCTACCGGGATATCATCATTCCGTTAACCAAGGATGTGGAGGT
ATTATATTTGTTTGAGAGGGTAGGAAGGCCCATCCCTTTCCCTTTGCCGG
CGCCTGCGGAAGAGTATAGGTTGAGAATCAGGGGGAGTAGGATATGAGGG
AGGGAGTGTGTGAGGGCGGGACAGGGATGGAGGGGTTGTGATGATGATAA
AAAGCAAATAAAGTACATAGCGTCTATACGTG
back to top

Coding sequence (CDS) from alignment at scaffold_1:508994..510375+

>mRNA_1420 ID=mRNA_1420|Name=jgi.p|Nanoce1779_2|572036|organism=Nannochloropsis oceanica|type=CDS|length=1221bp|location=Sequence derived from alignment at scaffold_1:508994..510375+ (Nannochloropsis oceanica)
ATGAGAACCCCCGCCAACGCTTCCGTCCACACATCCACGCTCCTGCTGCT
GTTCGTACTCGTGCTGCTGCCCATCTTCCCCCTCACCCAGGCTTTTATCC
CTCTTTTGAGCATGGATCACCTTCATCAGCAGCAACGGTCCCCGCCAGCC
TGTGCCTCCCCGCCACCCTGCGCTTCCACTCCCATCTTCTACTCCGGGGG
TGGCTTCAAACTGGCCGCAGCCGCTGCCGAGGTTGGCGGTCACGAGGAGG
CTGTCAGCACATCCGCGCGCTTAACCTGGGGGGTCCCCTCCATCACTCAT
ACTCCCAATGAGGCAACCGCAACCTCTTTCCCCACTTCCTCCCCCCCCAC
TGCCTCCACCCACACCGGCCACGGCGCCCTGGCAAGCACCACCACAGCGG
ATGTCATGTCCTTGGACAGCATCCGTAGCACCTTGATTCGACAGGAAGAT
TCCATCATCTTTGCCCTGATCGAACGCGCTCAATTCCGTCGCAACGAGGC
CATCTACCTTAAAGGCATTCTGCAACTCGACCCTTCCATCCCGGACTACA
CCTTCCTCAACTCCCTCTCCTTCCTCGAATATCTCCTACTAGAAACCGAA
AAATTACACGGGAAAGTCCGTCGTTACACGAGCCCAGAAGAGCATGCATT
CTTTCCCGAGCACCTGCCCAACCCAATCCTCACGCCTCTGCAATTCCCAG
CGTTGCTCGCCCCGAACACAGTAGATGTGAACGCCCAAATCCTCGATTTA
TATATCAATGAGATTGTCTCCGCTGTGTGCAAGGAAGGGGATGATGAGCA
GCATGGCTCGTCCGTTCTAGCCGACATCACGTTATTGCAGGCCATATCCC
GTCGGATCCACTTGGGAAAATTCGTGGCGGAGGCCAAATTTCTAGAAAGT
GAGGCTCGCTACCGTGCGCTTGTGGCTGCTGATGATGTCGATGGGGTCAT
GGCTTTGCTGACCAACACGGCGGTAGAAGCCCGAGTGTTGGAACGGGCCA
AGCTGAAGGCGAGCACGTACGGGCAGGACATCACAGGCGAGACGGAGGAG
TGCAAAGTCGAGCCTGACGTCATTGCGGCCATCTACCGGGATATCATCAT
TCCGTTAACCAAGGATGTGGAGGTATTATATTTGTTTGAGAGGGTAGGAA
GGCCCATCCCTTTCCCTTTGCCGGCGCCTGCGGAAGAGTATAGGTTGAGA
ATCAGGGGGAGTAGGATATGA
back to top
Synonyms
Publications