jgi.p|Nanoce1779_2|572031, mRNA_1418 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572031
Unique NamemRNA_1418
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length393
Alignment locationscaffold_1:506730..507122 -

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Properties
Property NameValue
TranscriptId572117
TrackFilteredModels2
ProteinId572031
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:506730..507122 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572031gene_1418Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572031mRNA_1418-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1418CDS_1418Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1418 ID=mRNA_1418|Name=jgi.p|Nanoce1779_2|572031|organism=Nannochloropsis oceanica|type=mRNA|length=393bp
TGTCTCGTCTAAGGAAGAAGTTTTCGTATCTATCCGTGTTCCCATGAGAT
CTTTTTCATCATTCCTTACATGGAGGTGCAGCATGTCTCTTGTTGTCTTT
TCCATTCTGATATATTACACTGACACTCACGATTTCCCTCATACTTTTCT
CTTTTTTCACTCGAACTTACCTGCGCAAACACGTATCCAATATACGCAAT
ATGACAAACACCAAAAACGGTTATTTGTTGCCCTCCCGTCAACACACTTA
TCTTCACTGTACTTTCTTTTCCTCGCTCCTCTCCCTCGCATACTCCCTAC
TTTTTCATGGTCGCGTCTCATTGTTCCATCTCCTGTCCATCAACATCCCT
GCCCCCACTGTCTCTCACCCAAGCCACTCTAAATCCACCCGCC
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protein sequence of jgi.p|Nanoce1779_2|572031

>mRNA_1418-protein ID=mRNA_1418-protein|Name=jgi.p|Nanoce1779_2|572031|organism=Nannochloropsis oceanica|type=polypeptide|length=113bp
MRSFSSFLTWRCSMSLVVFSILIYYTDTHDFPHTFLFFHSNLPAQTRIQY
TQYDKHQKRLFVALPSTHLSSLYFLFLAPLPRILPTFSWSRLIVPSPVHQ
HPCPHCLSPKPL*
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mRNA from alignment at scaffold_1:506730..507122-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1418 ID=mRNA_1418|Name=jgi.p|Nanoce1779_2|572031|organism=Nannochloropsis oceanica|type=mRNA|length=393bp|location=Sequence derived from alignment at scaffold_1:506730..507122- (Nannochloropsis oceanica)
TGTCTCGTCTAAGGAAGAAGTTTTCGTATCTATCCGTGTTCCCATGAGAT
CTTTTTCATCATTCCTTACATGGAGGTGCAGCATGTCTCTTGTTGTCTTT
TCCATTCTGATATATTACACTGACACTCACGATTTCCCTCATACTTTTCT
CTTTTTTCACTCGAACTTACCTGCGCAAACACGTATCCAATATACGCAAT
ATGACAAACACCAAAAACGGTTATTTGTTGCCCTCCCGTCAACACACTTA
TCTTCACTGTACTTTCTTTTCCTCGCTCCTCTCCCTCGCATACTCCCTAC
TTTTTCATGGTCGCGTCTCATTGTTCCATCTCCTGTCCATCAACATCCCT
GCCCCCACTGTCTCTCACCCAAGCCACTCTAAATCCACCCGCC
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Coding sequence (CDS) from alignment at scaffold_1:506730..507122-

>mRNA_1418 ID=mRNA_1418|Name=jgi.p|Nanoce1779_2|572031|organism=Nannochloropsis oceanica|type=CDS|length=339bp|location=Sequence derived from alignment at scaffold_1:506730..507122- (Nannochloropsis oceanica)
ATGAGATCTTTTTCATCATTCCTTACATGGAGGTGCAGCATGTCTCTTGT
TGTCTTTTCCATTCTGATATATTACACTGACACTCACGATTTCCCTCATA
CTTTTCTCTTTTTTCACTCGAACTTACCTGCGCAAACACGTATCCAATAT
ACGCAATATGACAAACACCAAAAACGGTTATTTGTTGCCCTCCCGTCAAC
ACACTTATCTTCACTGTACTTTCTTTTCCTCGCTCCTCTCCCTCGCATAC
TCCCTACTTTTTCATGGTCGCGTCTCATTGTTCCATCTCCTGTCCATCAA
CATCCCTGCCCCCACTGTCTCTCACCCAAGCCACTCTAA
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Synonyms
Publications