jgi.p|Nanoce1779_2|572030, mRNA_1417 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572030
Unique NamemRNA_1417
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1391
Alignment locationscaffold_1:505309..506699 +

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Properties
Property NameValue
TranscriptId572116
TrackFilteredModels2
ProteinId572030
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:505309..506699 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572030gene_1417Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572030mRNA_1417-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1417CDS_1417Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1417 ID=mRNA_1417|Name=jgi.p|Nanoce1779_2|572030|organism=Nannochloropsis oceanica|type=mRNA|length=1391bp
GGAGCCTTCCAACAATAAAATGTTGCATATTCATCCATTATTTTTGTCCG
AGTTTTACTAGCGACTTTGACAGGTTTTTCGATCAGGCAAAGTCACCGGA
CGGCCCACACAGGGCCATTTTTTCTTAGGTCACTCAGGTTTTGTTAATTT
GATTCTTTTGTGAAATCGATATTGATCCTGGTCAAGCCTCCAAACACATG
AAAATATTTGATGGGTCGTTAGTATTTATCGCCTTGTCTGGCCGGAGAGA
CTGCGGATGGCTAGGAAGGGGAAGAAAGTGACTTGTGCTCGTCCCCAACC
TCCCCAACCTCCCCGACCCTCACTCCTCAGCTGAACCTTTCTCCCCCTTG
GTCTATCCCCTCCATCCATTTCCTATCACAGCACTCCCGTCGACGCATCG
ACTTTGTCATGTACACCAGCATGCGAGCTGCGATCGTCTCGCCGCCCACG
GGGGTCTCCGACAGTACAAGCACGAGCACCAGTATCAAACACTACTACGA
CGAAACGGGACTCGAGCCCCCCAAAAAAGCGGGAGACGCCATCGATCAAC
TCAATGCCTTCATGGCCAAGCAAGCCCGAATGGAGTGGAGCCCCGATAAC
GAGGACTTCAAGGTCTACATGATGATCCGACAAGGGCACGTGGTCTTCAA
GCGACGGTCCATGGCCTTGCTCTACTTCTACTGGACGACCATTTCAGTCG
GCTTATTGCGCACACCCACCCTCCCTTTCTTGCTGGGGGCCTTGGTCTCC
ACATATGCTTACATGGAGCTTTATAGCGCTGTTTTACACATTGTATTGGA
CAATTCGGCGTTCATTCGTATCCCTGGATTGGACCAACCCGTGTTTGAGT
TTTTGGCGCATCATATTCTGCCCGTGGAGATTGCCCAGCGTCGCTTTCGG
GACATTTGTGGGGATTTGAATGTTATCGTGGGGGTTATATTTGTCATTAA
TATGCTGGTATTTGATATGTTGAAAGATGGACGGGTAATGTGCGTTGTGG
CCTCGGGAGGGGCTATGGCTTATTTGGGTCAGTTTGCCCATCGGCAGGCT
CACATGCCTCCGGGGAAAGTGAATAAATTTACGGGTTGGTTGCAGGAGGT
GGGGTTGCTGGTCTCGCCGACATTACATAGGGCACATCATCGGACGTACG
ATAGGGGGTTTGCAATCTTGGGGGGTTGGAGCGAGGGAGTTGTGACATGG
CTGTACCGGGAGGTAGTGCCATCGGGGTGGGTGTGGCTGTGGGTGTTTGT
AGCGATGACGGTGGGGGGCTTGCCGGGAGTGGTGAGGAGTTACCTGTCGG
TGTACGATGCAGTGATGGATGGGTGCAAGCAATAGGAACCAGGATCATGG
AGGTGCCTTGGTGTGTATGCGTGTGGCGATGGCGATGGGGG
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protein sequence of jgi.p|Nanoce1779_2|572030

>mRNA_1417-protein ID=mRNA_1417-protein|Name=jgi.p|Nanoce1779_2|572030|organism=Nannochloropsis oceanica|type=polypeptide|length=309bp
MYTSMRAAIVSPPTGVSDSTSTSTSIKHYYDETGLEPPKKAGDAIDQLNA
FMAKQARMEWSPDNEDFKVYMMIRQGHVVFKRRSMALLYFYWTTISVGLL
RTPTLPFLLGALVSTYAYMELYSAVLHIVLDNSAFIRIPGLDQPVFEFLA
HHILPVEIAQRRFRDICGDLNVIVGVIFVINMLVFDMLKDGRVMCVVASG
GAMAYLGQFAHRQAHMPPGKVNKFTGWLQEVGLLVSPTLHRAHHRTYDRG
FAILGGWSEGVVTWLYREVVPSGWVWLWVFVAMTVGGLPGVVRSYLSVYD
AVMDGCKQ*
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mRNA from alignment at scaffold_1:505309..506699+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1417 ID=mRNA_1417|Name=jgi.p|Nanoce1779_2|572030|organism=Nannochloropsis oceanica|type=mRNA|length=1391bp|location=Sequence derived from alignment at scaffold_1:505309..506699+ (Nannochloropsis oceanica)
GGAGCCTTCCAACAATAAAATGTTGCATATTCATCCATTATTTTTGTCCG
AGTTTTACTAGCGACTTTGACAGGTTTTTCGATCAGGCAAAGTCACCGGA
CGGCCCACACAGGGCCATTTTTTCTTAGGTCACTCAGGTTTTGTTAATTT
GATTCTTTTGTGAAATCGATATTGATCCTGGTCAAGCCTCCAAACACATG
AAAATATTTGATGGGTCGTTAGTATTTATCGCCTTGTCTGGCCGGAGAGA
CTGCGGATGGCTAGGAAGGGGAAGAAAGTGACTTGTGCTCGTCCCCAACC
TCCCCAACCTCCCCGACCCTCACTCCTCAGCTGAACCTTTCTCCCCCTTG
GTCTATCCCCTCCATCCATTTCCTATCACAGCACTCCCGTCGACGCATCG
ACTTTGTCATGTACACCAGCATGCGAGCTGCGATCGTCTCGCCGCCCACG
GGGGTCTCCGACAGTACAAGCACGAGCACCAGTATCAAACACTACTACGA
CGAAACGGGACTCGAGCCCCCCAAAAAAGCGGGAGACGCCATCGATCAAC
TCAATGCCTTCATGGCCAAGCAAGCCCGAATGGAGTGGAGCCCCGATAAC
GAGGACTTCAAGGTCTACATGATGATCCGACAAGGGCACGTGGTCTTCAA
GCGACGGTCCATGGCCTTGCTCTACTTCTACTGGACGACCATTTCAGTCG
GCTTATTGCGCACACCCACCCTCCCTTTCTTGCTGGGGGCCTTGGTCTCC
ACATATGCTTACATGGAGCTTTATAGCGCTGTTTTACACATTGTATTGGA
CAATTCGGCGTTCATTCGTATCCCTGGATTGGACCAACCCGTGTTTGAGT
TTTTGGCGCATCATATTCTGCCCGTGGAGATTGCCCAGCGTCGCTTTCGG
GACATTTGTGGGGATTTGAATGTTATCGTGGGGGTTATATTTGTCATTAA
TATGCTGGTATTTGATATGTTGAAAGATGGACGGGTAATGTGCGTTGTGG
CCTCGGGAGGGGCTATGGCTTATTTGGGTCAGTTTGCCCATCGGCAGGCT
CACATGCCTCCGGGGAAAGTGAATAAATTTACGGGTTGGTTGCAGGAGGT
GGGGTTGCTGGTCTCGCCGACATTACATAGGGCACATCATCGGACGTACG
ATAGGGGGTTTGCAATCTTGGGGGGTTGGAGCGAGGGAGTTGTGACATGG
CTGTACCGGGAGGTAGTGCCATCGGGGTGGGTGTGGCTGTGGGTGTTTGT
AGCGATGACGGTGGGGGGCTTGCCGGGAGTGGTGAGGAGTTACCTGTCGG
TGTACGATGCAGTGATGGATGGGTGCAAGCAATAGGAACCAGGATCATGG
AGGTGCCTTGGTGTGTATGCGTGTGGCGATGGCGATGGGGG
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Coding sequence (CDS) from alignment at scaffold_1:505309..506699+

>mRNA_1417 ID=mRNA_1417|Name=jgi.p|Nanoce1779_2|572030|organism=Nannochloropsis oceanica|type=CDS|length=927bp|location=Sequence derived from alignment at scaffold_1:505309..506699+ (Nannochloropsis oceanica)
ATGTACACCAGCATGCGAGCTGCGATCGTCTCGCCGCCCACGGGGGTCTC
CGACAGTACAAGCACGAGCACCAGTATCAAACACTACTACGACGAAACGG
GACTCGAGCCCCCCAAAAAAGCGGGAGACGCCATCGATCAACTCAATGCC
TTCATGGCCAAGCAAGCCCGAATGGAGTGGAGCCCCGATAACGAGGACTT
CAAGGTCTACATGATGATCCGACAAGGGCACGTGGTCTTCAAGCGACGGT
CCATGGCCTTGCTCTACTTCTACTGGACGACCATTTCAGTCGGCTTATTG
CGCACACCCACCCTCCCTTTCTTGCTGGGGGCCTTGGTCTCCACATATGC
TTACATGGAGCTTTATAGCGCTGTTTTACACATTGTATTGGACAATTCGG
CGTTCATTCGTATCCCTGGATTGGACCAACCCGTGTTTGAGTTTTTGGCG
CATCATATTCTGCCCGTGGAGATTGCCCAGCGTCGCTTTCGGGACATTTG
TGGGGATTTGAATGTTATCGTGGGGGTTATATTTGTCATTAATATGCTGG
TATTTGATATGTTGAAAGATGGACGGGTAATGTGCGTTGTGGCCTCGGGA
GGGGCTATGGCTTATTTGGGTCAGTTTGCCCATCGGCAGGCTCACATGCC
TCCGGGGAAAGTGAATAAATTTACGGGTTGGTTGCAGGAGGTGGGGTTGC
TGGTCTCGCCGACATTACATAGGGCACATCATCGGACGTACGATAGGGGG
TTTGCAATCTTGGGGGGTTGGAGCGAGGGAGTTGTGACATGGCTGTACCG
GGAGGTAGTGCCATCGGGGTGGGTGTGGCTGTGGGTGTTTGTAGCGATGA
CGGTGGGGGGCTTGCCGGGAGTGGTGAGGAGTTACCTGTCGGTGTACGAT
GCAGTGATGGATGGGTGCAAGCAATAG
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Synonyms
Publications