jgi.p|Nanoce1779_2|572028, mRNA_1416 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572028
Unique NamemRNA_1416
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1328
Alignment locationscaffold_1:503501..505288 +

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Properties
Property NameValue
TranscriptId572114
TrackFilteredModels2
ProteinId572028
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:503501..505288 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572028gene_1416Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572028mRNA_1416-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1416CDS_1416Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1416 ID=mRNA_1416|Name=jgi.p|Nanoce1779_2|572028|organism=Nannochloropsis oceanica|type=mRNA|length=1328bp
AACAGGCCTCCTTTGTATCGCACCCATCGACCCATCAAGATGCAGCGTCC
TATTGTCGTCGTCTTGACTTTGCTTCTGTGCTTTCAGTCTGTCGTTTCCT
TTTTGCTTCCTACTCCAATTGTTGTCCGATCTGCCACCGCGCCCGCCCGC
GGTGCTGGGGCCGTGCAAATGAATGGGGTCACAGACGCCATTACGTCCTA
CGTGGGGATCTGGAGCCCGACCATTCGCACTATCGTGGCAGACGCAAACA
TCCCTACGGCGCTGATCAAGTGGTTCCATGGCGCCAATAGGGGCATTATT
TTGACCACCATGGCCTCCTTCGGCGCCTATCTTGGATGGAAGATTCGCAA
CGGTGAGGGCGAGATTGAGTTTACCGGCAAGACCGCCCGCGAGCTCCACC
CAACCTTGATGGGCCTCGCTTTCCTTTTCTTCTTCCTCGGCGGACAAGGT
GGCCTTGTATTGCTCGATGTGCAGAATCACCCCATCTTGAATAGCACGCA
TGCCGTTACAGGATTGATTGGCATTGCCCTTTTGGCGTTTCAGGCGTTGC
TGCCCAAGCTTTTTGACGGCAATAGCGGAGAGACCGCCCGTACCGCCCAC
GCATACCTTGGCTCGGCGACTATGGCCTTATTGTTCATCCACGCGGGCTT
CGGCTTGCAGCTCGGGTTTTCGTTTTAAGGACTGGAAAGAGCGAAGGAGG
GATGGAGAGATTGGGGAGGGAATGACGGCTGATTTTTTGAGTTGAGACGG
AGTGAATGAAGGTTTTTGTCTCTTGTCTGAGCCCTTGATAATATAAATGT
ATGATCTGTGGCCGGGTTGTATCTGTGTACGGTCTTGCTCCTCAGAGGAA
ACGAATGAAAAAGCGCTCGGGGGATCAGATTGACAAGCCTATGCCCCTGC
GACGATATGATTGTGGCCGGTTTGTGGCCGCAGGATAACAGTCATTTTGA
TGATAATGCTGAATTGTGTGGTATACGCGACCATCAACCAACCAACAAAA
CCCCTATTAAAAATTAACCAATGCAATGCGCATTGCTCCAAGGAACTTAT
GGGCTGACCGAGGAAATGCGCAAATGAAAGCCAGGGTCTTGTGCCCCTCT
TCTAAGTTCTCACAGGAGACTTCTTATGCGGCGGTTGAAGGGGCTAGAAG
AATGTCGAGATGCCATGGCCTAGATATGTCTTGCTTGCTCATGGCGCCTA
TTAGACTTAGTAGACGGGGCGACCCCTACTCTTACCCTCCCTCTTCTAGC
ATTAAACCTGACATTTTCTTAGTTCTTTTTGTTTTGCCCTACATCCCTCT
AGAACCTATCGCATGCAACCTGCGTCCT
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protein sequence of jgi.p|Nanoce1779_2|572028

>mRNA_1416-protein ID=mRNA_1416-protein|Name=jgi.p|Nanoce1779_2|572028|organism=Nannochloropsis oceanica|type=polypeptide|length=213bp
MQRPIVVVLTLLLCFQSVVSFLLPTPIVVRSATAPARGAGAVQMNGVTDA
ITSYVGIWSPTIRTIVADANIPTALIKWFHGANRGIILTTMASFGAYLGW
KIRNGEGEIEFTGKTARELHPTLMGLAFLFFFLGGQGGLVLLDVQNHPIL
NSTHAVTGLIGIALLAFQALLPKLFDGNSGETARTAHAYLGSATMALLFI
HAGFGLQLGFSF*
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mRNA from alignment at scaffold_1:503501..505288+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1416 ID=mRNA_1416|Name=jgi.p|Nanoce1779_2|572028|organism=Nannochloropsis oceanica|type=mRNA|length=1788bp|location=Sequence derived from alignment at scaffold_1:503501..505288+ (Nannochloropsis oceanica)
AACAGGCCTCCTTTGTATCGCACCCATCGACCCATCAAGATGCAGCGTCC
TATTGTCGTCGTCTTGACTTTGCTTCTGTGCTTTCAGTCTGTCGTTTCCT
TTTTGCTTCCTACTCCAATTGTTGTCCGATCTGCCACCGCGCCCGCCCGC
GGTGCTGGGGCCGTGCAAATGAATGGGGTCACAGACGCCATTACGTCCTA
CGTGGGGATCTGGAGCCCGACCATTCGCACGTACGTAGTAGATCAGAGTA
TGTTAAAAAGGGGAAAATATGTGGGCATAGATTGTACGGCGACTAAAACC
CTTCCTTCCCCCTGTCCATCCACCTCCCTCTCCCTGAACGCGAAACAGTA
TCGTGGCAGACGCAAACATCCCTACGGCGCTGATCAAGTGGTTCCATGTA
AGAGACAATACAACAAGAATTTTATGAACTGACGCGTGGGTGATGCATGC
GCGCTAATTCTTTGGCAGAAACGATTCTATCTGAGCATGTATGCAAGGGG
CCACTCATACACATACATAGACTCATTTGACTCTTTACATCACCACCCAT
CACACCTGCGCCACATATACACCTCTATGTCAACTTTCAAACGTCTAGGG
CGCCAATATGTACGTATCGTGCTTGGAAAGATCCATCCCCGTGACGACGG
AACTGTCTCTTTGTTTCTTCTAAAAACCGTACCTCATCATTCACTTATCA
CTGGGTCTGTCCGGTCACATATTTGTAAATCTAACGACCATGTAAAATAG
GGGCATTATTTTGACCACCATGGCCTCCTTCGGCGCCTATCTTGGATGGA
AGATTCGCAACGGTGAGGGCGAGATTGAGTTTACCGGCAAGACCGCCCGC
GAGCTCCACCCAACCTTGATGGGCCTCGCTTTCCTTTTCTTCTTCCTCGG
CGGACAAGGTGGCCTTGTATTGCTCGATGTGCAGAATCACCCCATCTTGA
ATAGCACGCATGCCGTTACAGGATTGATTGGCATTGCCCTTTTGGCGTTT
CAGGCGTTGCTGCCCAAGCTTTTTGACGGCAATAGCGGAGAGACCGCCCG
TACCGCCCACGCATACCTTGGCTCGGCGACTATGGCCTTATTGTTCATCC
ACGCGGGCTTCGGCTTGCAGCTCGGGTTTTCGTTTTAAGGACTGGAAAGA
GCGAAGGAGGGATGGAGAGATTGGGGAGGGAATGACGGCTGATTTTTTGA
GTTGAGACGGAGTGAATGAAGGTTTTTGTCTCTTGTCTGAGCCCTTGATA
ATATAAATGTATGATCTGTGGCCGGGTTGTATCTGTGTACGGTCTTGCTC
CTCAGAGGAAACGAATGAAAAAGCGCTCGGGGGATCAGATTGACAAGCCT
ATGCCCCTGCGACGATATGATTGTGGCCGGTTTGTGGCCGCAGGATAACA
GTCATTTTGATGATAATGCTGAATTGTGTGGTATACGCGACCATCAACCA
ACCAACAAAACCCCTATTAAAAATTAACCAATGCAATGCGCATTGCTCCA
AGGAACTTATGGGCTGACCGAGGAAATGCGCAAATGAAAGCCAGGGTCTT
GTGCCCCTCTTCTAAGTTCTCACAGGAGACTTCTTATGCGGCGGTTGAAG
GGGCTAGAAGAATGTCGAGATGCCATGGCCTAGATATGTCTTGCTTGCTC
ATGGCGCCTATTAGACTTAGTAGACGGGGCGACCCCTACTCTTACCCTCC
CTCTTCTAGCATTAAACCTGACATTTTCTTAGTTCTTTTTGTTTTGCCCT
ACATCCCTCTAGAACCTATCGCATGCAACCTGCGTCCT
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Coding sequence (CDS) from alignment at scaffold_1:503501..505288+

>mRNA_1416 ID=mRNA_1416|Name=jgi.p|Nanoce1779_2|572028|organism=Nannochloropsis oceanica|type=CDS|length=2556bp|location=Sequence derived from alignment at scaffold_1:503501..505288+ (Nannochloropsis oceanica)
ATGCAGCGTCCTATTGTCGTCGTCTTGACTTTGCTTCTGTGCTTTCAGTC
TGTCGTTTCCTTTTTGCTTCCTACTCCAATTGTTGTCCGATCTGCCACCG
CGCCCGCCCGCGGTGCTGGGGCCGTGCAAATGAATGGGGTCACAGACGCC
ATTACGTCCTACGTGGGGATCTGGAGCCCGACCATTCGCACTATCGTGGC
AGACGCAAACATCCCTACGGCGCTGATCAAGTGGTTCCATGGCGCCAATA
GGGGCATTATTTTGACCACCATGGCCTCCTTCGGCGCCTATCTTGGATGG
AAGATTCGCAACGGTGAGGGCGAGATTGAGTTTACCGGCAAGACCGCCCG
CGAGCTCCACCCAACCTTGATGGGCCTCGCTTTCCTTTTCTTCTTCCTCG
GCGGACAAGGTGGCCTTGTATTGCTCGATGTGCAGAATCACCCCATCTTG
AATAGCACGCATGCCGTTACAGGATTGATTGGCATTGCCCTTTTGGCGTT
TCAGGCGTTGCTGCCCAAGCTTTTTGACGGCAATAGCGGAGAGACCGCCC
GTACCGCCCACGCATACCTTGGCTCGGCGACTATGGCCTTATTGTTCATC
CACGCGGGCTTCGGCTTGCAGCTCGGGTTTTCGTTTTAAATGCAGCGTCC
TATTGTCGTCGTCTTGACTTTGCTTCTGTGCTTTCAGTCTGTCGTTTCCT
TTTTGCTTCCTACTCCAATTGTTGTCCGATCTGCCACCGCGCCCGCCCGC
GGTGCTGGGGCCGTGCAAATGAATGGGGTCACAGACGCCATTACGTCCTA
CGTGGGGATCTGGAGCCCGACCATTCGCACTATCGTGGCAGACGCAAACA
TCCCTACGGCGCTGATCAAGTGGTTCCATGGCGCCAATAGGGGCATTATT
TTGACCACCATGGCCTCCTTCGGCGCCTATCTTGGATGGAAGATTCGCAA
CGGTGAGGGCGAGATTGAGTTTACCGGCAAGACCGCCCGCGAGCTCCACC
CAACCTTGATGGGCCTCGCTTTCCTTTTCTTCTTCCTCGGCGGACAAGGT
GGCCTTGTATTGCTCGATGTGCAGAATCACCCCATCTTGAATAGCACGCA
TGCCGTTACAGGATTGATTGGCATTGCCCTTTTGGCGTTTCAGGCGTTGC
TGCCCAAGCTTTTTGACGGCAATAGCGGAGAGACCGCCCGTACCGCCCAC
GCATACCTTGGCTCGGCGACTATGGCCTTATTGTTCATCCACGCGGGCTT
CGGCTTGCAGCTCGGGTTTTCGTTTTAAATGCAGCGTCCTATTGTCGTCG
TCTTGACTTTGCTTCTGTGCTTTCAGTCTGTCGTTTCCTTTTTGCTTCCT
ACTCCAATTGTTGTCCGATCTGCCACCGCGCCCGCCCGCGGTGCTGGGGC
CGTGCAAATGAATGGGGTCACAGACGCCATTACGTCCTACGTGGGGATCT
GGAGCCCGACCATTCGCACTATCGTGGCAGACGCAAACATCCCTACGGCG
CTGATCAAGTGGTTCCATGGCGCCAATAGGGGCATTATTTTGACCACCAT
GGCCTCCTTCGGCGCCTATCTTGGATGGAAGATTCGCAACGGTGAGGGCG
AGATTGAGTTTACCGGCAAGACCGCCCGCGAGCTCCACCCAACCTTGATG
GGCCTCGCTTTCCTTTTCTTCTTCCTCGGCGGACAAGGTGGCCTTGTATT
GCTCGATGTGCAGAATCACCCCATCTTGAATAGCACGCATGCCGTTACAG
GATTGATTGGCATTGCCCTTTTGGCGTTTCAGGCGTTGCTGCCCAAGCTT
TTTGACGGCAATAGCGGAGAGACCGCCCGTACCGCCCACGCATACCTTGG
CTCGGCGACTATGGCCTTATTGTTCATCCACGCGGGCTTCGGCTTGCAGC
TCGGGTTTTCGTTTTAAATGCAGCGTCCTATTGTCGTCGTCTTGACTTTG
CTTCTGTGCTTTCAGTCTGTCGTTTCCTTTTTGCTTCCTACTCCAATTGT
TGTCCGATCTGCCACCGCGCCCGCCCGCGGTGCTGGGGCCGTGCAAATGA
ATGGGGTCACAGACGCCATTACGTCCTACGTGGGGATCTGGAGCCCGACC
ATTCGCACTATCGTGGCAGACGCAAACATCCCTACGGCGCTGATCAAGTG
GTTCCATGGCGCCAATAGGGGCATTATTTTGACCACCATGGCCTCCTTCG
GCGCCTATCTTGGATGGAAGATTCGCAACGGTGAGGGCGAGATTGAGTTT
ACCGGCAAGACCGCCCGCGAGCTCCACCCAACCTTGATGGGCCTCGCTTT
CCTTTTCTTCTTCCTCGGCGGACAAGGTGGCCTTGTATTGCTCGATGTGC
AGAATCACCCCATCTTGAATAGCACGCATGCCGTTACAGGATTGATTGGC
ATTGCCCTTTTGGCGTTTCAGGCGTTGCTGCCCAAGCTTTTTGACGGCAA
TAGCGGAGAGACCGCCCGTACCGCCCACGCATACCTTGGCTCGGCGACTA
TGGCCTTATTGTTCATCCACGCGGGCTTCGGCTTGCAGCTCGGGTTTTCG
TTTTAA
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Synonyms
Publications