jgi.p|Nanoce1779_2|5814, mRNA_1413 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|5814
Unique NamemRNA_1413
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1812
Alignment locationscaffold_1:497265..499224 -

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Properties
Property NameValue
TranscriptId5900
TrackFilteredModels2
ProteinId5814
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:497265..499224 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|5814gene_1413Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|5814mRNA_1413-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1413CDS_1413Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1413 ID=mRNA_1413|Name=jgi.p|Nanoce1779_2|5814|organism=Nannochloropsis oceanica|type=mRNA|length=1812bp
TGGGGAGGTCGTTGCGTGAGTTAGATGCCCGCTTTCACATCTCGCGTACT
GTTCTGTCAATTTAAAGTTTATGTTAAAAGTGGATTCCTGAGGCTGGACA
TCTTAGGAAGCCGTAAAAATGCCCCACGGCTTGGTGCATTTGACTCCTTC
ATTCACATTCTCCTTTCCCTCTGCTCAGGTGACAGTCCCCTCCAATCCCA
CATCTTCACTGCTGGCTGAGGCTGCTTTCATAGCTCGACGTTATTGAGAC
ACAGCTCATCAAACCTTTTTCCCTCTACATATCCACAAAATAGTCCCCAT
CCACACCCACCAAATCGCCGGGGCCGATATACCGCCTCATACTATCCCTC
TTGCAATTAGTGCGAGCACATTGTGTGCGTTTGAGTCCTCCACATTTCTA
TTTTCGTCCGCTTATTATAAGCAACATCATGGCATCTGCCACCGCCGTAA
GGAACAGCAGCTCTGTCGTGCCGCCGAGGACGCCACGCACGAGCCCAGCA
CGCCGGGTTTTGCGTCTAGCGTTGGCAGGGGACACGATGCTGGGACGCTG
CGTGGCGGAGGCCATTCTGCAAGCGAGGGATCCATCCGATGCACCTAAAG
ATACGGAGCGCACAAAAATGCCCTTCCCTCCCGGAGGAAGCGCATTCGGC
ACGCCCCCTCGCAAACCGAAAGAGGATGAAGCCGTGGTCTTTGCGCCCGA
AGTGGTGGCTTTGGCTCACGAGGCAGATCTCTTTTTTCTGAACCTTGAGT
GTTGCATCACGAATCATCATCAACGCTGGCCGAATCCTCACAAGCCTTTT
TTTTTTCGTGCGCCGTTTTGCTCCGTGAACGAACTGAAGATTCTTGGTGT
GGATGCCGTGACATTGGCCAACAATCACGCGCTAGATTACGACGTGCCGG
GCCTCGAAGACACACTGAAGACGCTGGATGAGGCGGGCATCCCTTACACA
GGTGCAGGGCGGAACTTGGCCGAGGCTCGCCAGCCAGTGATTTTGGAGCA
TGAAGGTATGCGAATAGGCATCATAGGTGTGACGGACCATCCGCTCGAGT
TTGATGCGAAAGCAGACCGACCCGGGGTGTGCTATGTGGATTTGCAGCGG
CGCAGCGATATCGACACGCCGGCGGCTGCAGGCGAGGGGGGCGGAGGCAG
CATGGGACCCTTGGTTCCTACCTGGCTTGGCGACAAGATCCGTTTTTTAA
AGGAGGTGGAGCACTGCGACGTGGTCATAGTGTCCCCTCACTGGGGTCCG
AATATGTGCCTCGATCCTTTGCTCTATGTACGCGAATCAGCCAAAATCTT
GCATAACATGGGCGCTGACTTGATTGCCGGACACAGTGCTCATTGTTTTC
AAGGGGCATCGACGGAACTGCGGTGTCTTTACGACATAGGTGACTTTGTG
GACGACTATGCGACGGATCCCTATGCCCGCAATGATTTGGGCCTCTTTTT
CTTTGTGTTGTTTGACTTAGACACGAAGGAACCTTGGCGGGTGGAGGCCG
TTCCCTTGAAGCTCGATTTTTGTTTGACAAGGTTGGCTATGGGACAGGAA
TATGACTTCATTGTACAACGTTTCCAAAAGTTCTCGGCGAAGTATGGGAC
GCACGTCTGGGAAGACAAGCAACGCCGGCGATTGGTGTTTGATCTCTAAT
GGGAGGGCCGAGGCGGAGGTGCCTAGGTCGCGAAGAAGGCAAGATATTAT
GCAAGTCATGGGACATACAGCTTGACGACCAAAACCCTAAACAGTTCCAG
TACGTAGTGTGACGTTGTAACATGTGTCATGGTAAATAATTCTCAAAAGC
AAGACATTTTGA
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protein sequence of jgi.p|Nanoce1779_2|5814

>mRNA_1413-protein ID=mRNA_1413-protein|Name=jgi.p|Nanoce1779_2|5814|organism=Nannochloropsis oceanica|type=polypeptide|length=407bp
MASATAVRNSSSVVPPRTPRTSPARRVLRLALAGDTMLGRCVAEAILQAR
DPSDAPKDTERTKMPFPPGGSAFGTPPRKPKEDEAVVFAPEVVALAHEAD
LFFLNLECCITNHHQRWPNPHKPFFFRAPFCSVNELKILGVDAVTLANNH
ALDYDVPGLEDTLKTLDEAGIPYTGAGRNLAEARQPVILEHEGMRIGIIG
VTDHPLEFDAKADRPGVCYVDLQRRSDIDTPAAAGEGGGGSMGPLVPTWL
GDKIRFLKEVEHCDVVIVSPHWGPNMCLDPLLYVRESAKILHNMGADLIA
GHSAHCFQGASTELRCLYDIGDFVDDYATDPYARNDLGLFFFVLFDLDTK
EPWRVEAVPLKLDFCLTRLAMGQEYDFIVQRFQKFSAKYGTHVWEDKQRR
RLVFDL*
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mRNA from alignment at scaffold_1:497265..499224-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1413 ID=mRNA_1413|Name=jgi.p|Nanoce1779_2|5814|organism=Nannochloropsis oceanica|type=mRNA|length=1960bp|location=Sequence derived from alignment at scaffold_1:497265..499224- (Nannochloropsis oceanica)
TGGGGAGGTCGTTGCGTGAGTTAGATGCCCGCTTTCACATCTCGCGTACT
GTTCTGTCAATTTAAAGTTTATGTTAAAAGTGGATTCCTGAGGCTGGACA
TCTTAGGAAGCCGTAAAAATGCCCCACGGCTTGGTGCATTTGACTCCTTC
ATTCACATTCTCCTTTCCCTCTGCTCAGGTGACAGTCCCCTCCAATCCCA
CATCTTCACTGCTGGCTGAGGCTGCTTTCATAGCTCGACGTTATTGAGAC
ACAGCTCATCAAACCTTTTTCCCTCTACATATCCACAAAATAGTCCCCAT
CCACACCCACCAAATCGCCGGGGCCGATATACCGCCTCATACTATCCCTC
TTGCAATTAGTGCGAGCACATTGTGTGCGTTTGAGTCCTCCACATTTCTA
TTTTCGTCCGCTTATTATAAGCAACATCATGGCATCTGCCACCGCCGTAA
GGAACAGCAGCTCTGTCGTGCCGCCGAGGACGCCACGCACGAGCCCAGCA
CGCCGGGTTTTGCGTCTAGCGTTGGCAGGGGACACGATGCTGGGACGCTG
CGTGGCGGAGGCCATTCTGCAAGCGAGGGATCCATCCGATGCACCTAAAG
ATACGGAGCGCACAAAAATGCCCTTCCCTCCCGGAGGAAGCGCATTCGGC
ACGCCCCCTCGCAAACCGAAAGAGGATGAAGCCGTGGTCTTTGCGCCCGA
AGTGGTGGCTTTGGCTCACGAGGCAGATCTCTTTTTTCTGAACCTTGAGT
GTTGCATCACGAATCATCATCAACGCTGGCCGAATCCTCACAAGCCTTTT
TTTTTTCGTGCGCCGTTTTGCTCCGTGAACGAACTGAAGATTCTTGGTGT
GGATGCCGTGACATTGGCCAACAATCACGCGCTAGATTACGACGTGCCGG
GCCTCGAAGACACACTGAAGACGCTGGATGAGGCGGGCATCCCTTACACA
GGTGCAGGGCGGAACTTGGCCGAGGCTCGCCAGCCAGTGATTTTGGAGCA
TGAAGGTATGCGAATAGGCATCATAGGTGTGACGGACCATCCGCTCGAGT
TTGATGCGAAAGCAGACCGACCCGGGGTGTGCTATGTGGATTTGCAGCGG
TACGTTTTGGGATTGGGACCCATTTGTTGTTCCGCTTAAATTAAGTTGTT
GCCATTTTGTCGCCCGATCTTAAATCATGGCTAGATCACTTTTGCCGGTA
GATCGCTGATCCGGTTTCTCTTTTCTTCTCCTCTCCTTTCCTCGCAGGCG
CAGCGATATCGACACGCCGGCGGCTGCAGGCGAGGGGGGCGGAGGCAGCA
TGGGACCCTTGGTTCCTACCTGGCTTGGCGACAAGATCCGTTTTTTAAAG
GAGGTGGAGCACTGCGACGTGGTCATAGTGTCCCCTCACTGGGGTCCGAA
TATGTGCCTCGATCCTTTGCTCTATGTACGCGAATCAGCCAAAATCTTGC
ATAACATGGGCGCTGACTTGATTGCCGGACACAGTGCTCATTGTTTTCAA
GGGGCATCGACGGAACTGCGGTGTCTTTACGACATAGGTGACTTTGTGGA
CGACTATGCGACGGATCCCTATGCCCGCAATGATTTGGGCCTCTTTTTCT
TTGTGTTGTTTGACTTAGACACGAAGGAACCTTGGCGGGTGGAGGCCGTT
CCCTTGAAGCTCGATTTTTGTTTGACAAGGTTGGCTATGGGACAGGAATA
TGACTTCATTGTACAACGTTTCCAAAAGTTCTCGGCGAAGTATGGGACGC
ACGTCTGGGAAGACAAGCAACGCCGGCGATTGGTGTTTGATCTCTAATGG
GAGGGCCGAGGCGGAGGTGCCTAGGTCGCGAAGAAGGCAAGATATTATGC
AAGTCATGGGACATACAGCTTGACGACCAAAACCCTAAACAGTTCCAGTA
CGTAGTGTGACGTTGTAACATGTGTCATGGTAAATAATTCTCAAAAGCAA
GACATTTTGA
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Coding sequence (CDS) from alignment at scaffold_1:497265..499224-

>mRNA_1413 ID=mRNA_1413|Name=jgi.p|Nanoce1779_2|5814|organism=Nannochloropsis oceanica|type=CDS|length=2442bp|location=Sequence derived from alignment at scaffold_1:497265..499224- (Nannochloropsis oceanica)
GCGCAGCGATATCGACACGCCGGCGGCTGCAGGCGAGGGGGGCGGAGGCA
GCATGGGACCCTTGGTTCCTACCTGGCTTGGCGACAAGATCCGTTTTTTA
AAGGAGGTGGAGCACTGCGACGTGGTCATAGTGTCCCCTCACTGGGGTCC
GAATATGTGCCTCGATCCTTTGCTCTATGTACGCGAATCAGCCAAAATCT
TGCATAACATGGGCGCTGACTTGATTGCCGGACACAGTGCTCATTGTTTT
CAAGGGGCATCGACGGAACTGCGGTGTCTTTACGACATAGGTGACTTTGT
GGACGACTATGCGACGGATCCCTATGCCCGCAATGATTTGGGCCTCTTTT
TCTTTGTGTTGTTTGACTTAGACACGAAGGAACCTTGGCGGGTGGAGGCC
GTTCCCTTGAAGCTCGATTTTTGTTTGACAAGGTTGGCTATGGGACAGGA
ATATGACTTCATTGTACAACGTTTCCAAAAGTTCTCGGCGAAGTATGGGA
CGCACGTCTGGGAAGACAAGCAACGCCGGCGATTGGTGTTTGATCTCTAA
ATGGCATCTGCCACCGCCGTAAGGAACAGCAGCTCTGTCGTGCCGCCGAG
GACGCCACGCACGAGCCCAGCACGCCGGGTTTTGCGTCTAGCGTTGGCAG
GGGACACGATGCTGGGACGCTGCGTGGCGGAGGCCATTCTGCAAGCGAGG
GATCCATCCGATGCACCTAAAGATACGGAGCGCACAAAAATGCCCTTCCC
TCCCGGAGGAAGCGCATTCGGCACGCCCCCTCGCAAACCGAAAGAGGATG
AAGCCGTGGTCTTTGCGCCCGAAGTGGTGGCTTTGGCTCACGAGGCAGAT
CTCTTTTTTCTGAACCTTGAGTGTTGCATCACGAATCATCATCAACGCTG
GCCGAATCCTCACAAGCCTTTTTTTTTTCGTGCGCCGTTTTGCTCCGTGA
ACGAACTGAAGATTCTTGGTGTGGATGCCGTGACATTGGCCAACAATCAC
GCGCTAGATTACGACGTGCCGGGCCTCGAAGACACACTGAAGACGCTGGA
TGAGGCGGGCATCCCTTACACAGGTGCAGGGCGGAACTTGGCCGAGGCTC
GCCAGCCAGTGATTTTGGAGCATGAAGGTATGCGAATAGGCATCATAGGT
GTGACGGACCATCCGCTCGAGTTTGATGCGAAAGCAGACCGACCCGGGGT
GTGCTATGTGGATTTGCAGCGGCGCAGCGATATCGACACGCCGGCGGCTG
CAGGCGAGGGGGGCGGAGGCAGCATGGGACCCTTGGTTCCTACCTGGCTT
GGCGACAAGATCCGTTTTTTAAAGGAGGTGGAGCACTGCGACGTGGTCAT
AGTGTCCCCTCACTGGGGTCCGAATATGTGCCTCGATCCTTTGCTCTATG
TACGCGAATCAGCCAAAATCTTGCATAACATGGGCGCTGACTTGATTGCC
GGACACAGTGCTCATTGTTTTCAAGGGGCATCGACGGAACTGCGGTGTCT
TTACGACATAGGTGACTTTGTGGACGACTATGCGACGGATCCCTATGCCC
GCAATGATTTGGGCCTCTTTTTCTTTGTGTTGTTTGACTTAGACACGAAG
GAACCTTGGCGGGTGGAGGCCGTTCCCTTGAAGCTCGATTTTTGTTTGAC
AAGGTTGGCTATGGGACAGGAATATGACTTCATTGTACAACGTTTCCAAA
AGTTCTCGGCGAAGTATGGGACGCACGTCTGGGAAGACAAGCAACGCCGG
CGATTGGTGTTTGATCTCTAAATGGCATCTGCCACCGCCGTAAGGAACAG
CAGCTCTGTCGTGCCGCCGAGGACGCCACGCACGAGCCCAGCACGCCGGG
TTTTGCGTCTAGCGTTGGCAGGGGACACGATGCTGGGACGCTGCGTGGCG
GAGGCCATTCTGCAAGCGAGGGATCCATCCGATGCACCTAAAGATACGGA
GCGCACAAAAATGCCCTTCCCTCCCGGAGGAAGCGCATTCGGCACGCCCC
CTCGCAAACCGAAAGAGGATGAAGCCGTGGTCTTTGCGCCCGAAGTGGTG
GCTTTGGCTCACGAGGCAGATCTCTTTTTTCTGAACCTTGAGTGTTGCAT
CACGAATCATCATCAACGCTGGCCGAATCCTCACAAGCCTTTTTTTTTTC
GTGCGCCGTTTTGCTCCGTGAACGAACTGAAGATTCTTGGTGTGGATGCC
GTGACATTGGCCAACAATCACGCGCTAGATTACGACGTGCCGGGCCTCGA
AGACACACTGAAGACGCTGGATGAGGCGGGCATCCCTTACACAGGTGCAG
GGCGGAACTTGGCCGAGGCTCGCCAGCCAGTGATTTTGGAGCATGAAGGT
ATGCGAATAGGCATCATAGGTGTGACGGACCATCCGCTCGAGTTTGATGC
GAAAGCAGACCGACCCGGGGTGTGCTATGTGGATTTGCAGCG
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Synonyms
Publications