jgi.p|Nanoce1779_2|572016, mRNA_1410 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572016
Unique NamemRNA_1410
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length689
Alignment locationscaffold_1:490757..491445 +

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Properties
Property NameValue
TranscriptId572102
TrackFilteredModels2
ProteinId572016
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:490757..491445 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572016gene_1410Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572016mRNA_1410-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1410CDS_1410Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1410 ID=mRNA_1410|Name=jgi.p|Nanoce1779_2|572016|organism=Nannochloropsis oceanica|type=mRNA|length=689bp
ATATGTGTTTGTTGTGTTGTGGTAATGCATTGTGTTGTCAAGGCACGTCA
CATCTGCCTCGTTTGGTCATCAATTACGACAATCGCTCACAACCCAGCAG
CCCATTTTTCTTCTCAACATCACACTCACACAGATTACCAAAACACCAAC
CATGGTGCGCACCTTCATGCCGCAGCCGACACTAGAGGACGCTCAAGTCG
TGTTGGCGAAGCGCTTCTTTTTTATGGGTTGTTTGGGTTTGCCTTGGCTT
TTTGCCGTCTCTGTCATGTACTTCTGGCCTAAGGTTTACAGCGGGAGCAA
AATCAGCAGCACGGGCAACAGCAGCATGGTAAGAAGAGATGGAGGGCCAC
CACACGGTAACCCCGAGCTGCGGAAGTGGGTAGGCCGGTCGTTTGCTGGG
GCCGTTTTGGGTTTTGGCATCCTCATTGGATGGGTCATCTTGTTTCAATT
GCGGTGGCGAGGGTGGGGGTCTGGGGTTCTGAACTACATGATCAGTGCGC
CCGAGAGTTATTCGTCGGGATGGTAAGTATTGAGTGGAGAAAGAAAAAAT
AGAAACCAAAATTTTCGTATGTAAAGAAGGGTGAAAGCGTGGTCTGATAT
GCCAATTACAGCCCAGCAGCAGCACCACCACCACCACCAGCGTCCGCATC
AGCAGCATTTGCTTTTCCTCTCATCACGACGTTTCTACT
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protein sequence of jgi.p|Nanoce1779_2|572016

>mRNA_1410-protein ID=mRNA_1410-protein|Name=jgi.p|Nanoce1779_2|572016|organism=Nannochloropsis oceanica|type=polypeptide|length=125bp
MVRTFMPQPTLEDAQVVLAKRFFFMGCLGLPWLFAVSVMYFWPKVYSGSK
ISSTGNSSMVRRDGGPPHGNPELRKWVGRSFAGAVLGFGILIGWVILFQL
RWRGWGSGVLNYMISAPESYSSGW*
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mRNA from alignment at scaffold_1:490757..491445+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1410 ID=mRNA_1410|Name=jgi.p|Nanoce1779_2|572016|organism=Nannochloropsis oceanica|type=mRNA|length=689bp|location=Sequence derived from alignment at scaffold_1:490757..491445+ (Nannochloropsis oceanica)
ATATGTGTTTGTTGTGTTGTGGTAATGCATTGTGTTGTCAAGGCACGTCA
CATCTGCCTCGTTTGGTCATCAATTACGACAATCGCTCACAACCCAGCAG
CCCATTTTTCTTCTCAACATCACACTCACACAGATTACCAAAACACCAAC
CATGGTGCGCACCTTCATGCCGCAGCCGACACTAGAGGACGCTCAAGTCG
TGTTGGCGAAGCGCTTCTTTTTTATGGGTTGTTTGGGTTTGCCTTGGCTT
TTTGCCGTCTCTGTCATGTACTTCTGGCCTAAGGTTTACAGCGGGAGCAA
AATCAGCAGCACGGGCAACAGCAGCATGGTAAGAAGAGATGGAGGGCCAC
CACACGGTAACCCCGAGCTGCGGAAGTGGGTAGGCCGGTCGTTTGCTGGG
GCCGTTTTGGGTTTTGGCATCCTCATTGGATGGGTCATCTTGTTTCAATT
GCGGTGGCGAGGGTGGGGGTCTGGGGTTCTGAACTACATGATCAGTGCGC
CCGAGAGTTATTCGTCGGGATGGTAAGTATTGAGTGGAGAAAGAAAAAAT
AGAAACCAAAATTTTCGTATGTAAAGAAGGGTGAAAGCGTGGTCTGATAT
GCCAATTACAGCCCAGCAGCAGCACCACCACCACCACCAGCGTCCGCATC
AGCAGCATTTGCTTTTCCTCTCATCACGACGTTTCTACT
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Coding sequence (CDS) from alignment at scaffold_1:490757..491445+

>mRNA_1410 ID=mRNA_1410|Name=jgi.p|Nanoce1779_2|572016|organism=Nannochloropsis oceanica|type=CDS|length=375bp|location=Sequence derived from alignment at scaffold_1:490757..491445+ (Nannochloropsis oceanica)
ATGGTGCGCACCTTCATGCCGCAGCCGACACTAGAGGACGCTCAAGTCGT
GTTGGCGAAGCGCTTCTTTTTTATGGGTTGTTTGGGTTTGCCTTGGCTTT
TTGCCGTCTCTGTCATGTACTTCTGGCCTAAGGTTTACAGCGGGAGCAAA
ATCAGCAGCACGGGCAACAGCAGCATGGTAAGAAGAGATGGAGGGCCACC
ACACGGTAACCCCGAGCTGCGGAAGTGGGTAGGCCGGTCGTTTGCTGGGG
CCGTTTTGGGTTTTGGCATCCTCATTGGATGGGTCATCTTGTTTCAATTG
CGGTGGCGAGGGTGGGGGTCTGGGGTTCTGAACTACATGATCAGTGCGCC
CGAGAGTTATTCGTCGGGATGGTAA
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Synonyms
Publications