jgi.p|Nanoce1779_2|576349, mRNA_141 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576349
Unique Name	mRNA_141
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	911
Alignment location	scaffold_3:367290..368200 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	576435
Track	FilteredModels2
ProteinId	576349

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:367290..368200 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576349	gene_141	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576349	mRNA_141-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_141	CDS_141	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:367290..368200+
coding sequence from alignment at scaffold_3:367290..368200+

mRNA sequence

>mRNA_141 ID=mRNA_141|Name=jgi.p|Nanoce1779_2|576349|organism=Nannochloropsis oceanica|type=mRNA|length=911bp
AGCCGCAGGACCAGCGCCAGGCACCAACCGCTTTAAGCCAAGGGGCATCA
GTACTCTCCAACCTCCCACTACCCTCGCTGCTGATCGTGAGCCCCATCTC
GACTCCAACCGAGCAAGCACTCACCGCCGCTGTAAGACAAGCTAACGGCT
GCAAATGAATGTCACGACCTTGGACGATGACTCCAACTCAGCTCCGCCTC
CTCTTTCCACTCCCGTTGATCCCGCCCGTGACATCTTTCCACACTGCCTT
GTGTGGTCGCCCTTGCCCGTCTTAACGTGGTTCCTCCCCTTTATTGGCCA
TATGGGTATTGCCACCACTGATGGTATCATGTGGGATTTTGCGGGGCCTT
ATTCCATAGGCAAGCACAAACTGGCCTTTGGTCCACCCACGCGTTATATT
CAGCTGGACGTGGCCCCAAGCAAAGCATCAGACTACGATCTTGCCGTCGC
TGAGGCAAATGCTACGTATGCCTGTCGGACACACAACCTTTTTTGCGATA
ATTGCCATTCACATTGCGCTTGCGCTTTCAACAATTTTCAGTATAAAGGA
TGGAGAAGGTGGAATATGGTGGTACTATGTTTCTATATGTTTTTCGCTGG
GCGGTGGGTCAGTCCGATGGCGGTGGCCAAAACGTGGGGGCCGTTTCTGG
TGGGACTTACTGTAATACTGGTCATTGAATGCTTTTAAAAAAAGAGAATA
TCTACCACAATTAAGAAAAACTGAATATGTGAACAAAGAAGCAGAGAGGC
TGGTACATCTTCTGGTGCGGATTTTGTGGACAGAAAGGACGCCACATGAA
CAGCCAGGACTAACGGGGAAGGAAATTATGATCTGATAAAGAATAAAAAG
GGACTCTGAAATGCCAATAAAATGCGTGTGGTCTATGTTTTCCTTTACAC
GAACTACCCGC

protein sequence of jgi.p|Nanoce1779_2|576349

>mRNA_141-protein ID=mRNA_141-protein|Name=jgi.p|Nanoce1779_2|576349|organism=Nannochloropsis oceanica|type=polypeptide|length=178bp
MNVTTLDDDSNSAPPPLSTPVDPARDIFPHCLVWSPLPVLTWFLPFIGHM
GIATTDGIMWDFAGPYSIGKHKLAFGPPTRYIQLDVAPSKASDYDLAVAE
ANATYACRTHNLFCDNCHSHCACAFNNFQYKGWRRWNMVVLCFYMFFAGR
WVSPMAVAKTWGPFLVGLTVILVIECF*

mRNA from alignment at scaffold_3:367290..368200+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_141 ID=mRNA_141|Name=jgi.p|Nanoce1779_2|576349|organism=Nannochloropsis oceanica|type=mRNA|length=911bp|location=Sequence derived from alignment at scaffold_3:367290..368200+ (Nannochloropsis oceanica)
AGCCGCAGGACCAGCGCCAGGCACCAACCGCTTTAAGCCAAGGGGCATCA
GTACTCTCCAACCTCCCACTACCCTCGCTGCTGATCGTGAGCCCCATCTC
GACTCCAACCGAGCAAGCACTCACCGCCGCTGTAAGACAAGCTAACGGCT
GCAAATGAATGTCACGACCTTGGACGATGACTCCAACTCAGCTCCGCCTC
CTCTTTCCACTCCCGTTGATCCCGCCCGTGACATCTTTCCACACTGCCTT
GTGTGGTCGCCCTTGCCCGTCTTAACGTGGTTCCTCCCCTTTATTGGCCA
TATGGGTATTGCCACCACTGATGGTATCATGTGGGATTTTGCGGGGCCTT
ATTCCATAGGCAAGCACAAACTGGCCTTTGGTCCACCCACGCGTTATATT
CAGCTGGACGTGGCCCCAAGCAAAGCATCAGACTACGATCTTGCCGTCGC
TGAGGCAAATGCTACGTATGCCTGTCGGACACACAACCTTTTTTGCGATA
ATTGCCATTCACATTGCGCTTGCGCTTTCAACAATTTTCAGTATAAAGGA
TGGAGAAGGTGGAATATGGTGGTACTATGTTTCTATATGTTTTTCGCTGG
GCGGTGGGTCAGTCCGATGGCGGTGGCCAAAACGTGGGGGCCGTTTCTGG
TGGGACTTACTGTAATACTGGTCATTGAATGCTTTTAAAAAAAGAGAATA
TCTACCACAATTAAGAAAAACTGAATATGTGAACAAAGAAGCAGAGAGGC
TGGTACATCTTCTGGTGCGGATTTTGTGGACAGAAAGGACGCCACATGAA
CAGCCAGGACTAACGGGGAAGGAAATTATGATCTGATAAAGAATAAAAAG
GGACTCTGAAATGCCAATAAAATGCGTGTGGTCTATGTTTTCCTTTACAC
GAACTACCCGC

Coding sequence (CDS) from alignment at scaffold_3:367290..368200+

>mRNA_141 ID=mRNA_141|Name=jgi.p|Nanoce1779_2|576349|organism=Nannochloropsis oceanica|type=CDS|length=534bp|location=Sequence derived from alignment at scaffold_3:367290..368200+ (Nannochloropsis oceanica)
ATGAATGTCACGACCTTGGACGATGACTCCAACTCAGCTCCGCCTCCTCT
TTCCACTCCCGTTGATCCCGCCCGTGACATCTTTCCACACTGCCTTGTGT
GGTCGCCCTTGCCCGTCTTAACGTGGTTCCTCCCCTTTATTGGCCATATG
GGTATTGCCACCACTGATGGTATCATGTGGGATTTTGCGGGGCCTTATTC
CATAGGCAAGCACAAACTGGCCTTTGGTCCACCCACGCGTTATATTCAGC
TGGACGTGGCCCCAAGCAAAGCATCAGACTACGATCTTGCCGTCGCTGAG
GCAAATGCTACGTATGCCTGTCGGACACACAACCTTTTTTGCGATAATTG
CCATTCACATTGCGCTTGCGCTTTCAACAATTTTCAGTATAAAGGATGGA
GAAGGTGGAATATGGTGGTACTATGTTTCTATATGTTTTTCGCTGGGCGG
TGGGTCAGTCCGATGGCGGTGGCCAAAACGTGGGGGCCGTTTCTGGTGGG
ACTTACTGTAATACTGGTCATTGAATGCTTTTAA

Synonyms

Publications