jgi.p|Nanoce1779_2|572015, mRNA_1409 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572015
Unique NamemRNA_1409
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1199
Alignment locationscaffold_1:489583..490781 -

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Properties
Property NameValue
TranscriptId572101
TrackFilteredModels2
ProteinId572015
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:489583..490781 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572015gene_1409Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572015mRNA_1409-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1409CDS_1409Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1409 ID=mRNA_1409|Name=jgi.p|Nanoce1779_2|572015|organism=Nannochloropsis oceanica|type=mRNA|length=1199bp
TTACCACAACACAACAAACACATATACGCGTACACACACGGACAAAGAGA
TGAAGCTCTTACATCATCTCCATCGTTGCATTTGCATTTTCCCCCATAGA
CCCAGGCGGAGGTAGAGACACGCAAGCCATCAAGCAAGCAAGGCCGAGAG
GAGACCCGCCTACCTCCCCTCTTTCCAAAGCAAAATCATGAAGGGCAGCC
GCAAAGCCGAGGCAGCCCTAAGTGGCGGTACTTCGAGTAGACGACAACAA
CGCGGCGGTGGACGTGGCAACCGTGGTGGCGGTCATCAGCGCGCCTCCCG
ACACAAGGCACGGGTGTATCGCAACGGGCCTCCACACGAGGACGACCTCC
CCCCTCCCTCCTCTAGCCACGATGACCACGAGAACGAGGGCAGTGGCAGC
TGCAGCGACAACGAGAACTTCGGCACGGCACAGGACATTATCAATGCCCG
GGAGTGGCAACGTAAGCATTTCCCCATCAAACTACAAATGTGGGATTTTG
ACCAATGCGACCCCAACCGCTGCACGGGCCGGAAGCTCGCCCGCCTCGGG
TATATCCGTGAGATGAAACTCGGCGCACCTTTTCGGGGCCTCACCCTCAG
CCCACAAGCCGACAAGGTTGTCTCGAAAGAAGACCGCGCAATAGTAGATA
CAATGGGCGTATCCGTCATAGATTGTTCCTGGGCTCGGCTGGCCGAAATT
CCCTTCGCGAAAATGTCGCGAGGGGCACCTCGTCTCCTCCCCTATCTCGT
GGCAGCTAACAGTGTGAATTACGGAAAACCTTTCAAACTCACGTGTGCAG
AAGCTGTAGCAGCGACATTGTACATCGTTGGGCATGTGGAGGGAGCGAAG
GCATTGATGGCGGAGTTTTCGTGGGGGCCGGAGTTTTTGCGCTTGAATGC
TGAAGTGCTTGAGAGGTATGTGCAGTGTGAGACGAGTGAGGAGGTGAAGG
ATACACAGGAAGAGTATTTGAAAAAATGTTTTGAGGAAATGGCGGTGAGG
AAGGGAGAGGAGGATGATTTACCGAATTATTCTGACTACGAAGAGGAGGA
GGGAGACGAGGGGAGAGAAGAGGAGGAGCAAGAAGAAGAGGAGGAAGAGG
AGGAGGAAGAAGGAAAAAAAGTAGATGGGGAAAAGGGAGAGGATTCACGT
TTAGGCGCCTTGTAAGTATAAGCTTGAAAAGAAACAAAAGTCGTGTAGA
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protein sequence of jgi.p|Nanoce1779_2|572015

>mRNA_1409-protein ID=mRNA_1409-protein|Name=jgi.p|Nanoce1779_2|572015|organism=Nannochloropsis oceanica|type=polypeptide|length=326bp
MKGSRKAEAALSGGTSSRRQQRGGGRGNRGGGHQRASRHKARVYRNGPPH
EDDLPPPSSSHDDHENEGSGSCSDNENFGTAQDIINAREWQRKHFPIKLQ
MWDFDQCDPNRCTGRKLARLGYIREMKLGAPFRGLTLSPQADKVVSKEDR
AIVDTMGVSVIDCSWARLAEIPFAKMSRGAPRLLPYLVAANSVNYGKPFK
LTCAEAVAATLYIVGHVEGAKALMAEFSWGPEFLRLNAEVLERYVQCETS
EEVKDTQEEYLKKCFEEMAVRKGEEDDLPNYSDYEEEEGDEGREEEEQEE
EEEEEEEEGKKVDGEKGEDSRLGAL*
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mRNA from alignment at scaffold_1:489583..490781-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1409 ID=mRNA_1409|Name=jgi.p|Nanoce1779_2|572015|organism=Nannochloropsis oceanica|type=mRNA|length=1199bp|location=Sequence derived from alignment at scaffold_1:489583..490781- (Nannochloropsis oceanica)
TTACCACAACACAACAAACACATATACGCGTACACACACGGACAAAGAGA
TGAAGCTCTTACATCATCTCCATCGTTGCATTTGCATTTTCCCCCATAGA
CCCAGGCGGAGGTAGAGACACGCAAGCCATCAAGCAAGCAAGGCCGAGAG
GAGACCCGCCTACCTCCCCTCTTTCCAAAGCAAAATCATGAAGGGCAGCC
GCAAAGCCGAGGCAGCCCTAAGTGGCGGTACTTCGAGTAGACGACAACAA
CGCGGCGGTGGACGTGGCAACCGTGGTGGCGGTCATCAGCGCGCCTCCCG
ACACAAGGCACGGGTGTATCGCAACGGGCCTCCACACGAGGACGACCTCC
CCCCTCCCTCCTCTAGCCACGATGACCACGAGAACGAGGGCAGTGGCAGC
TGCAGCGACAACGAGAACTTCGGCACGGCACAGGACATTATCAATGCCCG
GGAGTGGCAACGTAAGCATTTCCCCATCAAACTACAAATGTGGGATTTTG
ACCAATGCGACCCCAACCGCTGCACGGGCCGGAAGCTCGCCCGCCTCGGG
TATATCCGTGAGATGAAACTCGGCGCACCTTTTCGGGGCCTCACCCTCAG
CCCACAAGCCGACAAGGTTGTCTCGAAAGAAGACCGCGCAATAGTAGATA
CAATGGGCGTATCCGTCATAGATTGTTCCTGGGCTCGGCTGGCCGAAATT
CCCTTCGCGAAAATGTCGCGAGGGGCACCTCGTCTCCTCCCCTATCTCGT
GGCAGCTAACAGTGTGAATTACGGAAAACCTTTCAAACTCACGTGTGCAG
AAGCTGTAGCAGCGACATTGTACATCGTTGGGCATGTGGAGGGAGCGAAG
GCATTGATGGCGGAGTTTTCGTGGGGGCCGGAGTTTTTGCGCTTGAATGC
TGAAGTGCTTGAGAGGTATGTGCAGTGTGAGACGAGTGAGGAGGTGAAGG
ATACACAGGAAGAGTATTTGAAAAAATGTTTTGAGGAAATGGCGGTGAGG
AAGGGAGAGGAGGATGATTTACCGAATTATTCTGACTACGAAGAGGAGGA
GGGAGACGAGGGGAGAGAAGAGGAGGAGCAAGAAGAAGAGGAGGAAGAGG
AGGAGGAAGAAGGAAAAAAAGTAGATGGGGAAAAGGGAGAGGATTCACGT
TTAGGCGCCTTGTAAGTATAAGCTTGAAAAGAAACAAAAGTCGTGTAGA
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Coding sequence (CDS) from alignment at scaffold_1:489583..490781-

>mRNA_1409 ID=mRNA_1409|Name=jgi.p|Nanoce1779_2|572015|organism=Nannochloropsis oceanica|type=CDS|length=978bp|location=Sequence derived from alignment at scaffold_1:489583..490781- (Nannochloropsis oceanica)
ATGAAGGGCAGCCGCAAAGCCGAGGCAGCCCTAAGTGGCGGTACTTCGAG
TAGACGACAACAACGCGGCGGTGGACGTGGCAACCGTGGTGGCGGTCATC
AGCGCGCCTCCCGACACAAGGCACGGGTGTATCGCAACGGGCCTCCACAC
GAGGACGACCTCCCCCCTCCCTCCTCTAGCCACGATGACCACGAGAACGA
GGGCAGTGGCAGCTGCAGCGACAACGAGAACTTCGGCACGGCACAGGACA
TTATCAATGCCCGGGAGTGGCAACGTAAGCATTTCCCCATCAAACTACAA
ATGTGGGATTTTGACCAATGCGACCCCAACCGCTGCACGGGCCGGAAGCT
CGCCCGCCTCGGGTATATCCGTGAGATGAAACTCGGCGCACCTTTTCGGG
GCCTCACCCTCAGCCCACAAGCCGACAAGGTTGTCTCGAAAGAAGACCGC
GCAATAGTAGATACAATGGGCGTATCCGTCATAGATTGTTCCTGGGCTCG
GCTGGCCGAAATTCCCTTCGCGAAAATGTCGCGAGGGGCACCTCGTCTCC
TCCCCTATCTCGTGGCAGCTAACAGTGTGAATTACGGAAAACCTTTCAAA
CTCACGTGTGCAGAAGCTGTAGCAGCGACATTGTACATCGTTGGGCATGT
GGAGGGAGCGAAGGCATTGATGGCGGAGTTTTCGTGGGGGCCGGAGTTTT
TGCGCTTGAATGCTGAAGTGCTTGAGAGGTATGTGCAGTGTGAGACGAGT
GAGGAGGTGAAGGATACACAGGAAGAGTATTTGAAAAAATGTTTTGAGGA
AATGGCGGTGAGGAAGGGAGAGGAGGATGATTTACCGAATTATTCTGACT
ACGAAGAGGAGGAGGGAGACGAGGGGAGAGAAGAGGAGGAGCAAGAAGAA
GAGGAGGAAGAGGAGGAGGAAGAAGGAAAAAAAGTAGATGGGGAAAAGGG
AGAGGATTCACGTTTAGGCGCCTTGTAA
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Synonyms
Publications