jgi.p|Nanoce1779_2|572013, mRNA_1408 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572013
Unique NamemRNA_1408
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length545
Alignment locationscaffold_1:489040..489584 +

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Properties
Property NameValue
TranscriptId572099
TrackFilteredModels2
ProteinId572013
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:489040..489584 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572013gene_1408Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572013mRNA_1408-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1408CDS_1408Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1408 ID=mRNA_1408|Name=jgi.p|Nanoce1779_2|572013|organism=Nannochloropsis oceanica|type=mRNA|length=545bp
GGAAATGGAGGAGGGAAATGAGGGAAACGGGGAGGTGGACTTGGAGGCGT
TTGACGATGCGGATCTGTACCAGCAACTGTTGAGGGATTACATACAAACA
GTCGGCACCGGGGGCGATGTGGACCCTGCTGCTGTTGCTGCCATGGGGCG
ATCCTTGTCGAGGAGACGCCATAAAAAGAAGGTCGATACCAAGGCGAGTA
AAGGGAGGAAGTTGAGGTATGCAGTGCACCCCAAGTTGGAGCATTTTATG
TTCCCAGTGCCCATGGGGGAGTGCGGGATAGATGTGGATAGACTGTTTGC
CTCGCTGCCCGGACGGAGGGGGAAGGTGGTGGTGCCCATGGCGGGGAAGG
CCGAGGAAGGGATAGACTGAGCGCAAATAACAAAAATGTTGGGGGGGATT
TTGGTAGTGCCCGTCGAAAGGGAAGAAGGAAGAGGGATAAAAGGAGTTGT
GAGAGTATCGAGAGGGAACAGGGAAAATACATTGAGATGGGGAGGGGAAA
GGGGAAAATAAAAACCCAGATAAAGAATATAAGCCAGGATCGATC
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protein sequence of jgi.p|Nanoce1779_2|572013

>mRNA_1408-protein ID=mRNA_1408-protein|Name=jgi.p|Nanoce1779_2|572013|organism=Nannochloropsis oceanica|type=polypeptide|length=122bp
MEEGNEGNGEVDLEAFDDADLYQQLLRDYIQTVGTGGDVDPAAVAAMGRS
LSRRRHKKKVDTKASKGRKLRYAVHPKLEHFMFPVPMGECGIDVDRLFAS
LPGRRGKVVVPMAGKAEEGID*
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mRNA from alignment at scaffold_1:489040..489584+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1408 ID=mRNA_1408|Name=jgi.p|Nanoce1779_2|572013|organism=Nannochloropsis oceanica|type=mRNA|length=545bp|location=Sequence derived from alignment at scaffold_1:489040..489584+ (Nannochloropsis oceanica)
GGAAATGGAGGAGGGAAATGAGGGAAACGGGGAGGTGGACTTGGAGGCGT
TTGACGATGCGGATCTGTACCAGCAACTGTTGAGGGATTACATACAAACA
GTCGGCACCGGGGGCGATGTGGACCCTGCTGCTGTTGCTGCCATGGGGCG
ATCCTTGTCGAGGAGACGCCATAAAAAGAAGGTCGATACCAAGGCGAGTA
AAGGGAGGAAGTTGAGGTATGCAGTGCACCCCAAGTTGGAGCATTTTATG
TTCCCAGTGCCCATGGGGGAGTGCGGGATAGATGTGGATAGACTGTTTGC
CTCGCTGCCCGGACGGAGGGGGAAGGTGGTGGTGCCCATGGCGGGGAAGG
CCGAGGAAGGGATAGACTGAGCGCAAATAACAAAAATGTTGGGGGGGATT
TTGGTAGTGCCCGTCGAAAGGGAAGAAGGAAGAGGGATAAAAGGAGTTGT
GAGAGTATCGAGAGGGAACAGGGAAAATACATTGAGATGGGGAGGGGAAA
GGGGAAAATAAAAACCCAGATAAAGAATATAAGCCAGGATCGATC
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Coding sequence (CDS) from alignment at scaffold_1:489040..489584+

>mRNA_1408 ID=mRNA_1408|Name=jgi.p|Nanoce1779_2|572013|organism=Nannochloropsis oceanica|type=CDS|length=366bp|location=Sequence derived from alignment at scaffold_1:489040..489584+ (Nannochloropsis oceanica)
ATGGAGGAGGGAAATGAGGGAAACGGGGAGGTGGACTTGGAGGCGTTTGA
CGATGCGGATCTGTACCAGCAACTGTTGAGGGATTACATACAAACAGTCG
GCACCGGGGGCGATGTGGACCCTGCTGCTGTTGCTGCCATGGGGCGATCC
TTGTCGAGGAGACGCCATAAAAAGAAGGTCGATACCAAGGCGAGTAAAGG
GAGGAAGTTGAGGTATGCAGTGCACCCCAAGTTGGAGCATTTTATGTTCC
CAGTGCCCATGGGGGAGTGCGGGATAGATGTGGATAGACTGTTTGCCTCG
CTGCCCGGACGGAGGGGGAAGGTGGTGGTGCCCATGGCGGGGAAGGCCGA
GGAAGGGATAGACTGA
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Synonyms
Publications