jgi.p|Nanoce1779_2|572002, mRNA_1406 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572002
Unique NamemRNA_1406
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length817
Alignment locationscaffold_1:482094..483066 -

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Properties
Property NameValue
TranscriptId572088
TrackFilteredModels2
ProteinId572002
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:482094..483066 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572002gene_1406Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572002mRNA_1406-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1406CDS_1406Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1406 ID=mRNA_1406|Name=jgi.p|Nanoce1779_2|572002|organism=Nannochloropsis oceanica|type=mRNA|length=817bp
ACAGGATCTGTTTTGCGGTGATAGCCGTGTATGGGATATGGCGTTTTCCT
TGTCGCCGCGACCGTCATACCTGCGAATACGGGTCGCCGTCCCTCCCATC
CCGAAGCCTCTGTCGTGTCCGCGTGTGGTGGTCGTCTTAGTCCAGCCCAA
GGCTCCCCCAGAGTAGTGGCATGGGGAGAAGGATGGGAGCTGGACGAGGA
CATCTGGGAGCGATTAGGCACGCGAATCCTTGACTTTGTCTTGCGGCGGA
AGGAGCCGGAGGAGCCCCACCCCTTGAGGATGCAACGATGGACGATCTCT
ATGCGTCGTTTGCCCTTTTTCCGTCGGGTCATCCGACACATGCAATTTTA
CCCCGATGGCCGCTGCGAGGTAGAGGAAGAGATTGGCGGACGGCCATTGC
TGTTCAAGCACCAGCATCAAGCAACAGCTAAAGCGAAGGCAGCAGTAACA
GCAGGAGGGAAAGGAGGAGGGAACGGACAACGACGGAAACGAAGAAAGAA
GGGAGGGAGGGGGGCAGCCGGACCGCCACTCATGCAAGGGAAGTGGAAAT
ATGACAAGTACGGTTTAAACTGGGAGTTGGAAGAGAAGGGATTAAAGCAC
TTTTTCCACGCCGAATTGATTTGGCATTCTTTCGGGGATCGGCCCAAGAT
GCACTGTGGGGTGATCGTGAGGAACCGGGGCCCGCGCTCCCTGTTGCCGC
CTTGGTTGTTCCGGCCGGTTGTGGGTGTCTTTTCCGGGTTAGGCAATGGC
ACAGATACGTGCCTGGTGCCTGAAGCACAGAGTAACGAGAATCGGTTTCG
GAATTACTAGGGTAGGG
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protein sequence of jgi.p|Nanoce1779_2|572002

>mRNA_1406-protein ID=mRNA_1406-protein|Name=jgi.p|Nanoce1779_2|572002|organism=Nannochloropsis oceanica|type=polypeptide|length=260bp
MGYGVFLVAATVIPANTGRRPSHPEASVVSACGGRLSPAQGSPRVVAWGE
GWELDEDIWERLGTRILDFVLRRKEPEEPHPLRMQRWTISMRRLPFFRRV
IRHMQFYPDGRCEVEEEIGGRPLLFKHQHQATAKAKAAVTAGGKGGGNGQ
RRKRRKKGGRGAAGPPLMQGKWKYDKYGLNWELEEKGLKHFFHAELIWHS
FGDRPKMHCGVIVRNRGPRSLLPPWLFRPVVGVFSGLGNGTDTCLVPEAQ
SNENRFRNY*
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mRNA from alignment at scaffold_1:482094..483066-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1406 ID=mRNA_1406|Name=jgi.p|Nanoce1779_2|572002|organism=Nannochloropsis oceanica|type=mRNA|length=973bp|location=Sequence derived from alignment at scaffold_1:482094..483066- (Nannochloropsis oceanica)
ACAGGATCTGTTTTGCGGTGATAGCCGTGTATGGGTGAGTCGTGCAGCGA
GATGACGACCTCAATACGATTTAGCAGTAGGAGAAGCTGGCCTCCCGCCT
CTCTCTCGTCCGCCTCCCCCTTTCTCAAGCTCCTGGTCCTGATAGTCCTG
CTAAAGCTCTGCCAACAATCACGAGGCCCCACGAACACAGGATATGGCGT
TTTCCTTGTCGCCGCGACCGTCATACCTGCGAATACGGGTCGCCGTCCCT
CCCATCCCGAAGCCTCTGTCGTGTCCGCGTGTGGTGGTCGTCTTAGTCCA
GCCCAAGGCTCCCCCAGAGTAGTGGCATGGGGAGAAGGATGGGAGCTGGA
CGAGGACATCTGGGAGCGATTAGGCACGCGAATCCTTGACTTTGTCTTGC
GGCGGAAGGAGCCGGAGGAGCCCCACCCCTTGAGGATGCAACGATGGACG
ATCTCTATGCGTCGTTTGCCCTTTTTCCGTCGGGTCATCCGACACATGCA
ATTTTACCCCGATGGCCGCTGCGAGGTAGAGGAAGAGATTGGCGGACGGC
CATTGCTGTTCAAGCACCAGCATCAAGCAACAGCTAAAGCGAAGGCAGCA
GTAACAGCAGGAGGGAAAGGAGGAGGGAACGGACAACGACGGAAACGAAG
AAAGAAGGGAGGGAGGGGGGCAGCCGGACCGCCACTCATGCAAGGGAAGT
GGAAATATGACAAGTACGGTTTAAACTGGGAGTTGGAAGAGAAGGGATTA
AAGCACTTTTTCCACGCCGAATTGATTTGGCATTCTTTCGGGGATCGGCC
CAAGATGCACTGTGGGGTGATCGTGAGGAACCGGGGCCCGCGCTCCCTGT
TGCCGCCTTGGTTGTTCCGGCCGGTTGTGGGTGTCTTTTCCGGGTTAGGC
AATGGCACAGATACGTGCCTGGTGCCTGAAGCACAGAGTAACGAGAATCG
GTTTCGGAATTACTAGGGTAGGG
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Coding sequence (CDS) from alignment at scaffold_1:482094..483066-

>mRNA_1406 ID=mRNA_1406|Name=jgi.p|Nanoce1779_2|572002|organism=Nannochloropsis oceanica|type=CDS|length=1560bp|location=Sequence derived from alignment at scaffold_1:482094..483066- (Nannochloropsis oceanica)
GATATGGCGTTTTCCTTGTCGCCGCGACCGTCATACCTGCGAATACGGGT
CGCCGTCCCTCCCATCCCGAAGCCTCTGTCGTGTCCGCGTGTGGTGGTCG
TCTTAGTCCAGCCCAAGGCTCCCCCAGAGTAGTGGCATGGGGAGAAGGAT
GGGAGCTGGACGAGGACATCTGGGAGCGATTAGGCACGCGAATCCTTGAC
TTTGTCTTGCGGCGGAAGGAGCCGGAGGAGCCCCACCCCTTGAGGATGCA
ACGATGGACGATCTCTATGCGTCGTTTGCCCTTTTTCCGTCGGGTCATCC
GACACATGCAATTTTACCCCGATGGCCGCTGCGAGGTAGAGGAAGAGATT
GGCGGACGGCCATTGCTGTTCAAGCACCAGCATCAAGCAACAGCTAAAGC
GAAGGCAGCAGTAACAGCAGGAGGGAAAGGAGGAGGGAACGGACAACGAC
GGAAACGAAGAAAGAAGGGAGGGAGGGGGGCAGCCGGACCGCCACTCATG
CAAGGGAAGTGGAAATATGACAAGTACGGTTTAAACTGGGAGTTGGAAGA
GAAGGGATTAAAGCACTTTTTCCACGCCGAATTGATTTGGCATTCTTTCG
GGGATCGGCCCAAGATGCACTGTGGGGTGATCGTGAGGAACCGGGGCCCG
CGCTCCCTGTTGCCGCCTTGGTTGTTCCGGCCGGTTGTGGGTGTCTTTTC
CGGGTTAGGCAATGGCACAGATACGTGCCTGGTGCCTGAAGCACAGAGTA
ACGAGAATCGGTTTCGGAATTACTAGATGGGATATGGCGTTTTCCTTGTC
GCCGCGACCGTCATACCTGCGAATACGGGTCGCCGTCCCTCCCATCCCGA
AGCCTCTGTCGTGTCCGCGTGTGGTGGTCGTCTTAGTCCAGCCCAAGGCT
CCCCCAGAGTAGTGGCATGGGGAGAAGGATGGGAGCTGGACGAGGACATC
TGGGAGCGATTAGGCACGCGAATCCTTGACTTTGTCTTGCGGCGGAAGGA
GCCGGAGGAGCCCCACCCCTTGAGGATGCAACGATGGACGATCTCTATGC
GTCGTTTGCCCTTTTTCCGTCGGGTCATCCGACACATGCAATTTTACCCC
GATGGCCGCTGCGAGGTAGAGGAAGAGATTGGCGGACGGCCATTGCTGTT
CAAGCACCAGCATCAAGCAACAGCTAAAGCGAAGGCAGCAGTAACAGCAG
GAGGGAAAGGAGGAGGGAACGGACAACGACGGAAACGAAGAAAGAAGGGA
GGGAGGGGGGCAGCCGGACCGCCACTCATGCAAGGGAAGTGGAAATATGA
CAAGTACGGTTTAAACTGGGAGTTGGAAGAGAAGGGATTAAAGCACTTTT
TCCACGCCGAATTGATTTGGCATTCTTTCGGGGATCGGCCCAAGATGCAC
TGTGGGGTGATCGTGAGGAACCGGGGCCCGCGCTCCCTGTTGCCGCCTTG
GTTGTTCCGGCCGGTTGTGGGTGTCTTTTCCGGGTTAGGCAATGGCACAG
ATACGTGCCTGGTGCCTGAAGCACAGAGTAACGAGAATCGGTTTCGGAAT
TACTAGATGG
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Synonyms
Publications