jgi.p|Nanoce1779_2|572000, mRNA_1405 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|572000
Unique Name	mRNA_1405
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	625
Alignment location	scaffold_1:480685..482052 +

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Properties


Property Name	Value
TranscriptId	572086
Track	FilteredModels2
ProteinId	572000

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:480685..482052 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572000	gene_1405	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572000	mRNA_1405-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1405	CDS_1405	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:480685..482052+
coding sequence from alignment at scaffold_1:480685..482052+

mRNA sequence

>mRNA_1405 ID=mRNA_1405|Name=jgi.p|Nanoce1779_2|572000|organism=Nannochloropsis oceanica|type=mRNA|length=625bp
TGGCGGATGATCCCAATCGGGCTGTCGATACGATCAAAATGTCGTCAACA
TCAACCGGCGCCACAGATACCAAGGCACTTTTTAGCCTACCACCGGACGC
GCAGCGGGACCGAAACCCGCGCCGACGTCTTATGAGTGAGGAGGACCAGT
TGTACATTGTCAAGCTGTTGGAAGAGCATGGAAATGATTTCAAGGCCATG
GAACGTGACATGTCCCTCAACTGCTGGCAACATTTGGAAACCAAGCTCAG
GAGCATGGCCAAGCGCTACTTCTCCCTTTCGCCCGACCAATGCCTCGTGC
CCCTTCCTGTTACATCTTCCTTAACATAAACACACAAAAAAGATATAGAA
ATAAAACACCTACAATGAGGAATGAAAGTGTGATCACAGTGTGTTAGTCG
AGCAACCTGGCAACAAAGAGCCCTCCGTATTAATATGGGGAACATGCATG
TCACGTGAACTGGAAAACCCCGCCCATCCTTTTCGTCATTCGTTTCTACT
TTTGATTAATTGCTGCTTTCTAGATCAGTGCTATATCCTCCCTTCCCATC
TGCCTGTCTCATGACTGGTACTTGCTCCACTCCCCTTATCTTCCTTTTCC
TCTGCTGTACATACCCCCCCCCCCC

protein sequence of jgi.p|Nanoce1779_2|572000

>mRNA_1405-protein ID=mRNA_1405-protein|Name=jgi.p|Nanoce1779_2|572000|organism=Nannochloropsis oceanica|type=polypeptide|length=97bp
MSSTSTGATDTKALFSLPPDAQRDRNPRRRLMSEEDQLYIVKLLEEHGND
FKAMERDMSLNCWQHLETKLRSMAKRYFSLSPDQCLVPLPVTSSLT*

mRNA from alignment at scaffold_1:480685..482052+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1405 ID=mRNA_1405|Name=jgi.p|Nanoce1779_2|572000|organism=Nannochloropsis oceanica|type=mRNA|length=1368bp|location=Sequence derived from alignment at scaffold_1:480685..482052+ (Nannochloropsis oceanica)
TGGCGGATGATCCCAATCGGGCTGTCGATACGATCAAAATGTCGTCAACA
TCAACCGGCGCCACAGATACCAAGGCACTTTTTAGCCTACCACCGGACGC
GCAGCGGGACCGAAACCCGCGCCGACGTCTTATGAGTGAGGAGGACCAGT
TGTACATTGTCAAGCTGTTGGAAGAGCATGGAAATGATTTCAAGGTACGT
TTGTCTAGTGTGGCTTTGATGGGGTAAGGAGTTTCTTTTTCCAGGAGTCA
ATACATTCGTAGCTCAATTTGTGGTTGCCAAACCGATCATGGCTTTATTT
TTCCCTCTCTCTCTCTCCCTCTGCTTCCATTTCTTTCTAAAACCAAATCC
AAGCTCTACTTCTAGCTGAGTCCTGCTACGTTCAAAAGACCCCATCGTCA
AGGCACTCAAATTTGTAGAGCAAGACAAATGATTTCACACAGAAGCCTCC
TCGCTATCCCAGGATGAGTCAAGCTGTGCTCGGGAGGAATGTTGGGGCAA
ACGGGAGGGAAGGAAGAAGGAAGTGGAGGAATGCGGTTCTTCACTAAAAT
GGTGGGGATTGCTGTCTTTCGCTTCTGGACTCTCGCCATCCTGTACGCTG
CCGCTCCTTTTGGGCCGGTTAGGCATTCAGTCGGAGTCCATCGGGACGTT
GGGGGCTTACACTTCATTTCACATACATGTAGATGGATGAGATATTTTGT
TTAGGTACTGCACTCATTCCAATCATTTTTCACTTTTCTGCGAGAGAGGG
GTGATGATAATTGATGAATTTCGTCTTTGAAAGTGCCTTAAGTCTTGATG
TGTGTGCTAGTCTTCTTGCTCCCCTGCCCTGCGAGGCTCACACTTAGTTA
CGCCCAGCTCCCCTCACAATTTCCTTCATTTTTTCTCACATACGTAATGC
ATGCACACACACACACAACCACTCTCTCCATACGTAGGCCATGGAACGTG
ACATGTCCCTCAACTGCTGGCAACATTTGGAAACCAAGCTCAGGAGCATG
GCCAAGCGCTACTTCTCCCTTTCGCCCGACCAATGCCTCGTGCCCCTTCC
TGTTACATCTTCCTTAACATAAACACACAAAAAAGATATAGAAATAAAAC
ACCTACAATGAGGAATGAAAGTGTGATCACAGTGTGTTAGTCGAGCAACC
TGGCAACAAAGAGCCCTCCGTATTAATATGGGGAACATGCATGTCACGTG
AACTGGAAAACCCCGCCCATCCTTTTCGTCATTCGTTTCTACTTTTGATT
AATTGCTGCTTTCTAGATCAGTGCTATATCCTCCCTTCCCATCTGCCTGT
CTCATGACTGGTACTTGCTCCACTCCCCTTATCTTCCTTTTCCTCTGCTG
TACATACCCCCCCCCCCC

Coding sequence (CDS) from alignment at scaffold_1:480685..482052+

>mRNA_1405 ID=mRNA_1405|Name=jgi.p|Nanoce1779_2|572000|organism=Nannochloropsis oceanica|type=CDS|length=582bp|location=Sequence derived from alignment at scaffold_1:480685..482052+ (Nannochloropsis oceanica)
ATGTCGTCAACATCAACCGGCGCCACAGATACCAAGGCACTTTTTAGCCT
ACCACCGGACGCGCAGCGGGACCGAAACCCGCGCCGACGTCTTATGAGTG
AGGAGGACCAGTTGTACATTGTCAAGCTGTTGGAAGAGCATGGAAATGAT
TTCAAGGCCATGGAACGTGACATGTCCCTCAACTGCTGGCAACATTTGGA
AACCAAGCTCAGGAGCATGGCCAAGCGCTACTTCTCCCTTTCGCCCGACC
AATGCCTCGTGCCCCTTCCTGTTACATCTTCCTTAACATAAATGTCGTCA
ACATCAACCGGCGCCACAGATACCAAGGCACTTTTTAGCCTACCACCGGA
CGCGCAGCGGGACCGAAACCCGCGCCGACGTCTTATGAGTGAGGAGGACC
AGTTGTACATTGTCAAGCTGTTGGAAGAGCATGGAAATGATTTCAAGGCC
ATGGAACGTGACATGTCCCTCAACTGCTGGCAACATTTGGAAACCAAGCT
CAGGAGCATGGCCAAGCGCTACTTCTCCCTTTCGCCCGACCAATGCCTCG
TGCCCCTTCCTGTTACATCTTCCTTAACATAA

Synonyms

Publications