jgi.p|Nanoce1779_2|571996, mRNA_1404 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571996
Unique NamemRNA_1404
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1263
Alignment locationscaffold_1:479056..480318 -

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Properties
Property NameValue
TranscriptId572082
TrackFilteredModels2
ProteinId571996
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:479056..480318 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571996gene_1404Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571996mRNA_1404-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1404CDS_1404Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1404 ID=mRNA_1404|Name=jgi.p|Nanoce1779_2|571996|organism=Nannochloropsis oceanica|type=mRNA|length=1263bp
AGCACTGCATATGTGGTTTGGCTTGTCTTTTGATGGGCTAGGATCGTGTG
GCTGGTTGGGCCCCTCACTGAGAAGCTGGCTTTCTCTTTTTTTAGTCGAG
TCGGAGAGCTTTTCATTGCACGAGCCGAAGCATAACGGTACTGTAACTTG
TACACCATAACACTTTCAGGAACAAGACGCTGAGAAATATGCACCTGAAT
GAGCACGAGTTTCGTGCGGCTCTGACACCGTTATGTCCGTCCTCGACCAA
GATGGCCTCCATCACAGAACAACCTCCCGGCTCATGACAGTCACGGTCAT
TGCTTCTTAACTGTCTTCACACGGCCATCATCCACACACATACGCCCATG
CTCCACTCCCTACTAGCTTCACAAGCACCACCGTCAATCATGCCGCCGCC
TGAGCCGGCCCTGCCGCCCGCAGCTGTCGGGAAAGGTGCAACCGAGAAGC
TTATCGAGCTTATAACGCTGCTTACACTTGGAGGTCTCTTCCTCGGTGCC
TTGTATTTGAAAGTCTACGGTTTTGCATACCCTTCCAGCCATAGAAGAAA
TTATTGCAGTAGTCATAGTACCCTGTTCCACTTGATCGGAGGTACAGGGG
GAGGCCGGCAAGGCGAGGACGAGCTGCGCGAGATTATGGTGCTGGCAAAG
CACGCTCAAATGCGAGGGGAAATCATGGAGTACGGAGGCCTGAGGGGTTG
GCTGGAGCACTACATGGCCAGGAAAAAGGCCAGCCTTCCCGACAAGATAC
GGCATAATGTTGAAGGAGATGTACAGCCCGAGACATCATCGACTCTACCG
GTGCAGGAAAGACCCAAAGCAAGCGCAGGCTCGTATTTTTTCACAGCACT
CATGGCCTCCCTACTGGCGGCAGTATGCGTATTGCACCACCACAGCAAAG
CCTTGACGTCTTAATCGAGGCCACTATAGAGAAAGTAGGGTCGACATCCA
GCTGGGCATACCCACGTACGCATCGTTGCTTCCATTTTGGATGCACCGCA
ACTTGCGTAGTTCACTTCATTTTCCACCACCGTATTTGTGAGACCTTTTG
AAAGTACAGAAATACAAATTATTTGAACACTCAACCCACACAAAGCACAC
ATCAGAAAAACCCTGTGACGATTAAACTAAAGTGTAAATAGAGACAAAAA
AAGGAGTAGAGTCCACGTACACATACACGTGACATGCATCTTGACACCAG
AACGACAGCAAGGCCTTTGCTGCAACACTCGAGTCACAGAAAGTAAAGCA
CTTCGTCAATTAA
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protein sequence of jgi.p|Nanoce1779_2|571996

>mRNA_1404-protein ID=mRNA_1404-protein|Name=jgi.p|Nanoce1779_2|571996|organism=Nannochloropsis oceanica|type=polypeptide|length=189bp
MLHSLLASQAPPSIMPPPEPALPPAAVGKGATEKLIELITLLTLGGLFLG
ALYLKVYGFAYPSSHRRNYCSSHSTLFHLIGGTGGGRQGEDELREIMVLA
KHAQMRGEIMEYGGLRGWLEHYMARKKASLPDKIRHNVEGDVQPETSSTL
PVQERPKASAGSYFFTALMASLLAAVCVLHHHSKALTS*
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mRNA from alignment at scaffold_1:479056..480318-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1404 ID=mRNA_1404|Name=jgi.p|Nanoce1779_2|571996|organism=Nannochloropsis oceanica|type=mRNA|length=1263bp|location=Sequence derived from alignment at scaffold_1:479056..480318- (Nannochloropsis oceanica)
AGCACTGCATATGTGGTTTGGCTTGTCTTTTGATGGGCTAGGATCGTGTG
GCTGGTTGGGCCCCTCACTGAGAAGCTGGCTTTCTCTTTTTTTAGTCGAG
TCGGAGAGCTTTTCATTGCACGAGCCGAAGCATAACGGTACTGTAACTTG
TACACCATAACACTTTCAGGAACAAGACGCTGAGAAATATGCACCTGAAT
GAGCACGAGTTTCGTGCGGCTCTGACACCGTTATGTCCGTCCTCGACCAA
GATGGCCTCCATCACAGAACAACCTCCCGGCTCATGACAGTCACGGTCAT
TGCTTCTTAACTGTCTTCACACGGCCATCATCCACACACATACGCCCATG
CTCCACTCCCTACTAGCTTCACAAGCACCACCGTCAATCATGCCGCCGCC
TGAGCCGGCCCTGCCGCCCGCAGCTGTCGGGAAAGGTGCAACCGAGAAGC
TTATCGAGCTTATAACGCTGCTTACACTTGGAGGTCTCTTCCTCGGTGCC
TTGTATTTGAAAGTCTACGGTTTTGCATACCCTTCCAGCCATAGAAGAAA
TTATTGCAGTAGTCATAGTACCCTGTTCCACTTGATCGGAGGTACAGGGG
GAGGCCGGCAAGGCGAGGACGAGCTGCGCGAGATTATGGTGCTGGCAAAG
CACGCTCAAATGCGAGGGGAAATCATGGAGTACGGAGGCCTGAGGGGTTG
GCTGGAGCACTACATGGCCAGGAAAAAGGCCAGCCTTCCCGACAAGATAC
GGCATAATGTTGAAGGAGATGTACAGCCCGAGACATCATCGACTCTACCG
GTGCAGGAAAGACCCAAAGCAAGCGCAGGCTCGTATTTTTTCACAGCACT
CATGGCCTCCCTACTGGCGGCAGTATGCGTATTGCACCACCACAGCAAAG
CCTTGACGTCTTAATCGAGGCCACTATAGAGAAAGTAGGGTCGACATCCA
GCTGGGCATACCCACGTACGCATCGTTGCTTCCATTTTGGATGCACCGCA
ACTTGCGTAGTTCACTTCATTTTCCACCACCGTATTTGTGAGACCTTTTG
AAAGTACAGAAATACAAATTATTTGAACACTCAACCCACACAAAGCACAC
ATCAGAAAAACCCTGTGACGATTAAACTAAAGTGTAAATAGAGACAAAAA
AAGGAGTAGAGTCCACGTACACATACACGTGACATGCATCTTGACACCAG
AACGACAGCAAGGCCTTTGCTGCAACACTCGAGTCACAGAAAGTAAAGCA
CTTCGTCAATTAA
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Coding sequence (CDS) from alignment at scaffold_1:479056..480318-

>mRNA_1404 ID=mRNA_1404|Name=jgi.p|Nanoce1779_2|571996|organism=Nannochloropsis oceanica|type=CDS|length=567bp|location=Sequence derived from alignment at scaffold_1:479056..480318- (Nannochloropsis oceanica)
ATGCTCCACTCCCTACTAGCTTCACAAGCACCACCGTCAATCATGCCGCC
GCCTGAGCCGGCCCTGCCGCCCGCAGCTGTCGGGAAAGGTGCAACCGAGA
AGCTTATCGAGCTTATAACGCTGCTTACACTTGGAGGTCTCTTCCTCGGT
GCCTTGTATTTGAAAGTCTACGGTTTTGCATACCCTTCCAGCCATAGAAG
AAATTATTGCAGTAGTCATAGTACCCTGTTCCACTTGATCGGAGGTACAG
GGGGAGGCCGGCAAGGCGAGGACGAGCTGCGCGAGATTATGGTGCTGGCA
AAGCACGCTCAAATGCGAGGGGAAATCATGGAGTACGGAGGCCTGAGGGG
TTGGCTGGAGCACTACATGGCCAGGAAAAAGGCCAGCCTTCCCGACAAGA
TACGGCATAATGTTGAAGGAGATGTACAGCCCGAGACATCATCGACTCTA
CCGGTGCAGGAAAGACCCAAAGCAAGCGCAGGCTCGTATTTTTTCACAGC
ACTCATGGCCTCCCTACTGGCGGCAGTATGCGTATTGCACCACCACAGCA
AAGCCTTGACGTCTTAA
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Synonyms
Publications