jgi.p|Nanoce1779_2|571993, mRNA_1403 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|571993
Unique Name	mRNA_1403
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2857
Alignment location	scaffold_1:476178..479034 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	572079
Track	FilteredModels2
ProteinId	571993

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:476178..479034 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|571993	gene_1403	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|571993	mRNA_1403-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1403	CDS_1403	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:476178..479034+
coding sequence from alignment at scaffold_1:476178..479034+

mRNA sequence

>mRNA_1403 ID=mRNA_1403|Name=jgi.p|Nanoce1779_2|571993|organism=Nannochloropsis oceanica|type=mRNA|length=2857bp
TCTCATTCTTTTTTTAAAGGGCCTTCTGGGGCGTCTTCGGAGTGCACACA
AGAACACGACGCGATGCTTTTGTCCTCGAGCCGTCACGTTTTAGGTCGGG
CGCCCTTTCCCGTGCCTACTGTCTGTTCATGCCTGGCTGGGCCTGTTGTC
ATGACACCACACCGATATCTTGGGGCCTGTAAGGTTCTCTCGGGTGCACA
CTCGGGAAGCACTCAGATTGTCCCAGCAAGACTTCGCTTCTTCCCGTGTG
TTTGCACTAGGATTTTCTCGAACCCACCTCACACTGTTCCCTCCCTTCCA
CGCACATATCCCATAGTCCCCTTTCGCTCGTACGCCACCTCCTGTTGCTC
TAATCCTCGAGTCGCCTCTTTCCTCTGCGGTTGACGTAATTGTGAGCACG
AGCCAGCGTGGCAAAGGGTTGTTGTCAGGGGCAAAAGAAAACGACGCGAC
GAAATCCGGGCGTGTCGCAGGACAGAACTGCAGGCAAGGCTTGTTCCGAT
TCCAGTCCGTACCTGCCACGTCCCTGCCCTTGTTGCAAGTGACCCTCCAC
GCTGAGTAAGGAGACACGCGGTCAAGGAGCAGGGAACGGTCACCAGGCGA
ATCTTTGCCAGGGGCCTGCCCACCGAGACTTTTTTTACTGGCAACACGTC
AGCTTTGAATTATTCACGCCCAGCAAGTCGGCATCCACTTGACCAACCGG
CGCAGCAAGCCACCGAGCCAGCAGAGGCATGTATTCCGGCACATCTTACG
CCTCGGGCAACCCATATGTTGTAGGGGGCTACCGGGTCTCTTCGACATCC
AGCACCAACACGACAACACATGCTAACCCGGTGGCCCTGAGCACCTCCAG
CCCCCTCAGCACCACCACCACTTCAAGCCCGGTGACTGCATACATCAGCA
GCAGCACCACCATGACGTCGACAAGCGATTGTTGTGCCTCCACCTCGTCC
TTGTCCTCACCTACAAACGCAGCGCCTCCCAGCAGCAGTTCGACTCCCTA
CGGTGGCGTGGGCCTCATCTCCTCCACATTGGCAGGAACCAACACCTGCA
GCAGCACCAGTAGCACCAAAAATATCTCCTCTCGTAAACCGATCGCGCCA
CTGCCACTTTCGTCATTATCATCATTGTCATCACAGCCCGATACGAAAAT
AACTCCTGCAGTGTCCTCCCTCTTGTCCTCCCAACTGCCCTCGGCTTCGC
CCCACTCCCCAACAACCGCCAGCTCACCCTACAGCACATTTCCCATCAGA
GCGAGTGGCGCGAATGAGGTGTGCAGCAGCGGTAGCAGCAGTAATAGCGA
TACTACCTCCTCTTGCTCCTCTCCACGGACTCAGACGAGAAGTACCAACA
ACTACCAGCGCAGCAGCAGTGGCACCCTAAGCCAAGCAGCCGCTGCCTTC
GCCGCAACAGCAGCCGCTGCCGGCTCCCGAAACGGGAAGAGATCATCCCG
CACCTGTGGGGGAGGGCCTTCAGCTACCAACAGCATCAAGGTGGAGGTGG
TGGAGACTGACATGACGCCTGGCGCGGACGGGCCTACTTATTCGATCAAG
CTCAACATGAATGGTCGGAGCTACGTAGCGAAGCGGCACCATAACAAGCT
GCGCTCGCTTGTGGACGGACTCCGCGATCGGGGATATCGGGTCTGGCGAC
CTTTCCCAGAGGTTGAGGAGATGGTTGGGCAAGCTCCCGTAAAGGTGGAG
AACAGCTTAGTGGAAGCATTGCCATTCTACGAGGGTTTTGGGTATTCAAT
CAAGAGTCTTGCGTCGACCATGCTGAAAAGCACGAGCGCAGCGCATTTGC
GGAAGAAGCGCTCGGTGCAGCTGGAGCAGATGTCGGCGCGCATTGACGCG
TTTTTGAAAACCGTATTTTTGGAAAATGACGACTTGCAGTATGAGCAAGT
GGTGTCCCAATTTTTTTGGGAGCCGCTGGAGAAGAAGCTACCGGTGTTGC
TTGAAGAGGAGGGGTGGGAGGACGGAGAAGGAGAGTCAGATACGGAGGAA
GAAGGGGAGGGAAGCAGTTCCTCGGACGAAGAGGAGGATTTAGGGAGAGA
GGGGGGGAGGGAGACGGCGGTGCAGGCCGGTATGGTGCGGATGCGGAAGT
GATAGTAGAAGATAAGGGAGGACTGGAGAGAAGGAGATTCCGGGAGATTG
GTAGAGATATTGGGGGATGGAGGTATTGGGGGATGGAGGGTGACTGAAAG
AGGCAAAAGACAGTAAGCGAATGAAAAGGGAGGGAACAGCCAGTGTGTAT
CCGGGCAAGCGAGAGGAAAAGAGGGAAAGAGGGAAAGCTGGGAAGGGTGG
AAATGACTCCCGCGAATCCATGAGCTGTGCATGTGATAGAGACCGGTATC
AAGAGTATAGAATAGGGGGCGACCATAGATTCATTTCTCACTTATGCATA
CAGCCAGAATGGCTATCAGACTTAGTTTCTGTATTTTCTCCTCCTTTCCT
TCTCCCTCCTTCGTGGTGTGTGCGCTGTCGTTCACTCTGCTCAACGAAAT
AGAGGGTGGAGAGATGGTAACGACCGAAGGGTAGCGAAGGAAGGGCAACG
AAGGAAGGGCGAAGGAGAGGGAGCACCACGTAGACAAGAGTGAACATGAA
CCATAGAAGTCGCAACGGGGGGCGCGTGATGGCCTTGCCATCGTCCCGGT
CAGTGCGCATGCATACTCAGATCAGACAAACAGGAGGAAAGGCGAGCACA
GAGCTTGACATTTCGTGAGTTCTACGTCGGTACCACATCGAAGAAGTGCT
TAATGCCAACGAAAGAAAAGCATACGGGATAACAGAGGGGAGGGGGAGGA
GGGGAGGATCGGTGTAGAGGCAGCGGGTATAAAGACAAGCAAACCCACGC
CTTCTTA

protein sequence of jgi.p|Nanoce1779_2|571993

>mRNA_1403-protein ID=mRNA_1403-protein|Name=jgi.p|Nanoce1779_2|571993|organism=Nannochloropsis oceanica|type=polypeptide|length=458bp
MYSGTSYASGNPYVVGGYRVSSTSSTNTTTHANPVALSTSSPLSTTTTSS
PVTAYISSSTTMTSTSDCCASTSSLSSPTNAAPPSSSSTPYGGVGLISST
LAGTNTCSSTSSTKNISSRKPIAPLPLSSLSSLSSQPDTKITPAVSSLLS
SQLPSASPHSPTTASSPYSTFPIRASGANEVCSSGSSSNSDTTSSCSSPR
TQTRSTNNYQRSSSGTLSQAAAAFAATAAAAGSRNGKRSSRTCGGGPSAT
NSIKVEVVETDMTPGADGPTYSIKLNMNGRSYVAKRHHNKLRSLVDGLRD
RGYRVWRPFPEVEEMVGQAPVKVENSLVEALPFYEGFGYSIKSLASTMLK
STSAAHLRKKRSVQLEQMSARIDAFLKTVFLENDDLQYEQVVSQFFWEPL
EKKLPVLLEEEGWEDGEGESDTEEEGEGSSSSDEEEDLGREGGRETAVQA
GMVRMRK*

mRNA from alignment at scaffold_1:476178..479034+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1403 ID=mRNA_1403|Name=jgi.p|Nanoce1779_2|571993|organism=Nannochloropsis oceanica|type=mRNA|length=2857bp|location=Sequence derived from alignment at scaffold_1:476178..479034+ (Nannochloropsis oceanica)
TCTCATTCTTTTTTTAAAGGGCCTTCTGGGGCGTCTTCGGAGTGCACACA
AGAACACGACGCGATGCTTTTGTCCTCGAGCCGTCACGTTTTAGGTCGGG
CGCCCTTTCCCGTGCCTACTGTCTGTTCATGCCTGGCTGGGCCTGTTGTC
ATGACACCACACCGATATCTTGGGGCCTGTAAGGTTCTCTCGGGTGCACA
CTCGGGAAGCACTCAGATTGTCCCAGCAAGACTTCGCTTCTTCCCGTGTG
TTTGCACTAGGATTTTCTCGAACCCACCTCACACTGTTCCCTCCCTTCCA
CGCACATATCCCATAGTCCCCTTTCGCTCGTACGCCACCTCCTGTTGCTC
TAATCCTCGAGTCGCCTCTTTCCTCTGCGGTTGACGTAATTGTGAGCACG
AGCCAGCGTGGCAAAGGGTTGTTGTCAGGGGCAAAAGAAAACGACGCGAC
GAAATCCGGGCGTGTCGCAGGACAGAACTGCAGGCAAGGCTTGTTCCGAT
TCCAGTCCGTACCTGCCACGTCCCTGCCCTTGTTGCAAGTGACCCTCCAC
GCTGAGTAAGGAGACACGCGGTCAAGGAGCAGGGAACGGTCACCAGGCGA
ATCTTTGCCAGGGGCCTGCCCACCGAGACTTTTTTTACTGGCAACACGTC
AGCTTTGAATTATTCACGCCCAGCAAGTCGGCATCCACTTGACCAACCGG
CGCAGCAAGCCACCGAGCCAGCAGAGGCATGTATTCCGGCACATCTTACG
CCTCGGGCAACCCATATGTTGTAGGGGGCTACCGGGTCTCTTCGACATCC
AGCACCAACACGACAACACATGCTAACCCGGTGGCCCTGAGCACCTCCAG
CCCCCTCAGCACCACCACCACTTCAAGCCCGGTGACTGCATACATCAGCA
GCAGCACCACCATGACGTCGACAAGCGATTGTTGTGCCTCCACCTCGTCC
TTGTCCTCACCTACAAACGCAGCGCCTCCCAGCAGCAGTTCGACTCCCTA
CGGTGGCGTGGGCCTCATCTCCTCCACATTGGCAGGAACCAACACCTGCA
GCAGCACCAGTAGCACCAAAAATATCTCCTCTCGTAAACCGATCGCGCCA
CTGCCACTTTCGTCATTATCATCATTGTCATCACAGCCCGATACGAAAAT
AACTCCTGCAGTGTCCTCCCTCTTGTCCTCCCAACTGCCCTCGGCTTCGC
CCCACTCCCCAACAACCGCCAGCTCACCCTACAGCACATTTCCCATCAGA
GCGAGTGGCGCGAATGAGGTGTGCAGCAGCGGTAGCAGCAGTAATAGCGA
TACTACCTCCTCTTGCTCCTCTCCACGGACTCAGACGAGAAGTACCAACA
ACTACCAGCGCAGCAGCAGTGGCACCCTAAGCCAAGCAGCCGCTGCCTTC
GCCGCAACAGCAGCCGCTGCCGGCTCCCGAAACGGGAAGAGATCATCCCG
CACCTGTGGGGGAGGGCCTTCAGCTACCAACAGCATCAAGGTGGAGGTGG
TGGAGACTGACATGACGCCTGGCGCGGACGGGCCTACTTATTCGATCAAG
CTCAACATGAATGGTCGGAGCTACGTAGCGAAGCGGCACCATAACAAGCT
GCGCTCGCTTGTGGACGGACTCCGCGATCGGGGATATCGGGTCTGGCGAC
CTTTCCCAGAGGTTGAGGAGATGGTTGGGCAAGCTCCCGTAAAGGTGGAG
AACAGCTTAGTGGAAGCATTGCCATTCTACGAGGGTTTTGGGTATTCAAT
CAAGAGTCTTGCGTCGACCATGCTGAAAAGCACGAGCGCAGCGCATTTGC
GGAAGAAGCGCTCGGTGCAGCTGGAGCAGATGTCGGCGCGCATTGACGCG
TTTTTGAAAACCGTATTTTTGGAAAATGACGACTTGCAGTATGAGCAAGT
GGTGTCCCAATTTTTTTGGGAGCCGCTGGAGAAGAAGCTACCGGTGTTGC
TTGAAGAGGAGGGGTGGGAGGACGGAGAAGGAGAGTCAGATACGGAGGAA
GAAGGGGAGGGAAGCAGTTCCTCGGACGAAGAGGAGGATTTAGGGAGAGA
GGGGGGGAGGGAGACGGCGGTGCAGGCCGGTATGGTGCGGATGCGGAAGT
GATAGTAGAAGATAAGGGAGGACTGGAGAGAAGGAGATTCCGGGAGATTG
GTAGAGATATTGGGGGATGGAGGTATTGGGGGATGGAGGGTGACTGAAAG
AGGCAAAAGACAGTAAGCGAATGAAAAGGGAGGGAACAGCCAGTGTGTAT
CCGGGCAAGCGAGAGGAAAAGAGGGAAAGAGGGAAAGCTGGGAAGGGTGG
AAATGACTCCCGCGAATCCATGAGCTGTGCATGTGATAGAGACCGGTATC
AAGAGTATAGAATAGGGGGCGACCATAGATTCATTTCTCACTTATGCATA
CAGCCAGAATGGCTATCAGACTTAGTTTCTGTATTTTCTCCTCCTTTCCT
TCTCCCTCCTTCGTGGTGTGTGCGCTGTCGTTCACTCTGCTCAACGAAAT
AGAGGGTGGAGAGATGGTAACGACCGAAGGGTAGCGAAGGAAGGGCAACG
AAGGAAGGGCGAAGGAGAGGGAGCACCACGTAGACAAGAGTGAACATGAA
CCATAGAAGTCGCAACGGGGGGCGCGTGATGGCCTTGCCATCGTCCCGGT
CAGTGCGCATGCATACTCAGATCAGACAAACAGGAGGAAAGGCGAGCACA
GAGCTTGACATTTCGTGAGTTCTACGTCGGTACCACATCGAAGAAGTGCT
TAATGCCAACGAAAGAAAAGCATACGGGATAACAGAGGGGAGGGGGAGGA
GGGGAGGATCGGTGTAGAGGCAGCGGGTATAAAGACAAGCAAACCCACGC
CTTCTTA

Coding sequence (CDS) from alignment at scaffold_1:476178..479034+

>mRNA_1403 ID=mRNA_1403|Name=jgi.p|Nanoce1779_2|571993|organism=Nannochloropsis oceanica|type=CDS|length=1374bp|location=Sequence derived from alignment at scaffold_1:476178..479034+ (Nannochloropsis oceanica)
ATGTATTCCGGCACATCTTACGCCTCGGGCAACCCATATGTTGTAGGGGG
CTACCGGGTCTCTTCGACATCCAGCACCAACACGACAACACATGCTAACC
CGGTGGCCCTGAGCACCTCCAGCCCCCTCAGCACCACCACCACTTCAAGC
CCGGTGACTGCATACATCAGCAGCAGCACCACCATGACGTCGACAAGCGA
TTGTTGTGCCTCCACCTCGTCCTTGTCCTCACCTACAAACGCAGCGCCTC
CCAGCAGCAGTTCGACTCCCTACGGTGGCGTGGGCCTCATCTCCTCCACA
TTGGCAGGAACCAACACCTGCAGCAGCACCAGTAGCACCAAAAATATCTC
CTCTCGTAAACCGATCGCGCCACTGCCACTTTCGTCATTATCATCATTGT
CATCACAGCCCGATACGAAAATAACTCCTGCAGTGTCCTCCCTCTTGTCC
TCCCAACTGCCCTCGGCTTCGCCCCACTCCCCAACAACCGCCAGCTCACC
CTACAGCACATTTCCCATCAGAGCGAGTGGCGCGAATGAGGTGTGCAGCA
GCGGTAGCAGCAGTAATAGCGATACTACCTCCTCTTGCTCCTCTCCACGG
ACTCAGACGAGAAGTACCAACAACTACCAGCGCAGCAGCAGTGGCACCCT
AAGCCAAGCAGCCGCTGCCTTCGCCGCAACAGCAGCCGCTGCCGGCTCCC
GAAACGGGAAGAGATCATCCCGCACCTGTGGGGGAGGGCCTTCAGCTACC
AACAGCATCAAGGTGGAGGTGGTGGAGACTGACATGACGCCTGGCGCGGA
CGGGCCTACTTATTCGATCAAGCTCAACATGAATGGTCGGAGCTACGTAG
CGAAGCGGCACCATAACAAGCTGCGCTCGCTTGTGGACGGACTCCGCGAT
CGGGGATATCGGGTCTGGCGACCTTTCCCAGAGGTTGAGGAGATGGTTGG
GCAAGCTCCCGTAAAGGTGGAGAACAGCTTAGTGGAAGCATTGCCATTCT
ACGAGGGTTTTGGGTATTCAATCAAGAGTCTTGCGTCGACCATGCTGAAA
AGCACGAGCGCAGCGCATTTGCGGAAGAAGCGCTCGGTGCAGCTGGAGCA
GATGTCGGCGCGCATTGACGCGTTTTTGAAAACCGTATTTTTGGAAAATG
ACGACTTGCAGTATGAGCAAGTGGTGTCCCAATTTTTTTGGGAGCCGCTG
GAGAAGAAGCTACCGGTGTTGCTTGAAGAGGAGGGGTGGGAGGACGGAGA
AGGAGAGTCAGATACGGAGGAAGAAGGGGAGGGAAGCAGTTCCTCGGACG
AAGAGGAGGATTTAGGGAGAGAGGGGGGGAGGGAGACGGCGGTGCAGGCC
GGTATGGTGCGGATGCGGAAGTGA

Synonyms

Publications