jgi.p|Nanoce1779_2|576347, mRNA_140 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576347
Unique NamemRNA_140
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1586
Alignment locationscaffold_3:365633..367218 -

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Properties
Property NameValue
TranscriptId576433
TrackFilteredModels2
ProteinId576347
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:365633..367218 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576347gene_140Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576347mRNA_140-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_140CDS_140Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_140 ID=mRNA_140|Name=jgi.p|Nanoce1779_2|576347|organism=Nannochloropsis oceanica|type=mRNA|length=1586bp
TAGACTTGGCATGGACTCGAAGCGTATCAGTATCGCCAACAGGTGACGCG
CCCCGACGTTGCCGTTCCTTCTTCATTCTCTCACTCACTCGCTCTATGAT
CAGGCAACCAACACCCACGTACCAGACCGACACGTCTAGAGAAAAATGCC
AGCCTGGCCGCCACCGCGCGCCCGGCTGATACCTCCTGTCATCTTGTTCT
TCCTTTTCTCTACCCTGCCGCTCCTACTCCTTTTTGTCTCTGCCAGTGAA
GGAGCCGCCTCAACCCCAACAAAGAAGGACGTGCTGGTACTTGGGGGAAA
TGGGTTCCTTGGCGTGTATGCTGTTCAGGCCCTGGCGCATTCAGGGCACT
ATACCATCGCCATTGCCAATCGCAACACGAGTTATTTCGACTCTGCCGAG
CGCTTGGCGGCGACCGGTGTGATTTCACTTCATTGGGACAGACGCCACAC
GCCCTTTGGCGAAGCGCCCGAGATTCAAGCCTACTTCGCTACTCGACCGC
TTTTACATGCCATAATCGATTTTTCGTGCTATACTGGCGCGGCGGCCCAT
GATGTCGCGACCTATCTGCTGGAAGCGGACGTGCAGGTGGAGTGGTACGT
TTATATAAGCAGCGACTCCATCTACGAAGTGGGTTCGCCCAAGGCTCATC
CTGAGAAGCCCACGGAGGAGGGGATCGACGACCACCGTCCTTCTTCACTT
CAAGACCAGGCTCAGCTCAATGCTTGCGATGCCTACGCCCATGGCAAGCT
AGAGGCCGAAGAGGTGCTGCAGGCACTGCAGCCCGCCTCCAGCTGGTCCT
ACGTCTTTCTGCGCATTCCCGATGTGGTAGGCCCCCGAGACACCTCCTAC
CGATGGTGGTTCTATCAGATTCTGCTCAAGCTTCAATCGAGGACGCAAGT
GCCCTTGCCTTATGTGCAAGAAGATCGGGACGGGCGCCAGATGAGTTTGG
TGTATGTCAAGGACGTGGCGCGGGCTATTTTACAGGTGCTCGCGAATGGT
GATGAACACGACAGCAATATGAGCAAGCGCAAAGCCTCGGTCAAGAACAC
GGCTCTCAATCTGGCCCATGACGAAACTTGGACTTTCCCGCAAATCATGG
AGTGCATCGCGCAAGAAGTAGCCGAGAACATGTCGGCTTCACCACAGCCA
CCACAACTACGGTTCCCCCTGCTATTTGCCCTAAATCGGACGACTGACTT
CCCTAGTGTTAAAAGGGGTCCTATCTCAACCTTGCGGGCCCGCACGCTGC
TGGGATGGGAACCAACCCCTTGGTTGGAGATATTGCACAAGACGGTGGAG
TACTTCGAGTCAGAAGCCGTATGGCAGGACGCGCGCTTCGTCAAGGAGAG
AGAGGGAGTCCTGCGAATGGCACTCCAGCAAGTGGCAAAATATGATAAGC
AGGAAGAGTTTCTTAGCGCGATTCGCGATGTATACGAGTTGGATGTATCT
ATGTTGGACATACGCAATGCAGGGTGGAAGGCTGACGTCATTGTGGAGGA
TGCAATATGGACAGCGACGCACTCGGAGCTTTAAGCGACCAGAACGAAAA
TTGAGAGAAATGTATCACAATATATACCATCTGGCA
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protein sequence of jgi.p|Nanoce1779_2|576347

>mRNA_140-protein ID=mRNA_140-protein|Name=jgi.p|Nanoce1779_2|576347|organism=Nannochloropsis oceanica|type=polypeptide|length=463bp
MPAWPPPRARLIPPVILFFLFSTLPLLLLFVSASEGAASTPTKKDVLVLG
GNGFLGVYAVQALAHSGHYTIAIANRNTSYFDSAERLAATGVISLHWDRR
HTPFGEAPEIQAYFATRPLLHAIIDFSCYTGAAAHDVATYLLEADVQVEW
YVYISSDSIYEVGSPKAHPEKPTEEGIDDHRPSSLQDQAQLNACDAYAHG
KLEAEEVLQALQPASSWSYVFLRIPDVVGPRDTSYRWWFYQILLKLQSRT
QVPLPYVQEDRDGRQMSLVYVKDVARAILQVLANGDEHDSNMSKRKASVK
NTALNLAHDETWTFPQIMECIAQEVAENMSASPQPPQLRFPLLFALNRTT
DFPSVKRGPISTLRARTLLGWEPTPWLEILHKTVEYFESEAVWQDARFVK
EREGVLRMALQQVAKYDKQEEFLSAIRDVYELDVSMLDIRNAGWKADVIV
EDAIWTATHSEL*
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mRNA from alignment at scaffold_3:365633..367218-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_140 ID=mRNA_140|Name=jgi.p|Nanoce1779_2|576347|organism=Nannochloropsis oceanica|type=mRNA|length=1586bp|location=Sequence derived from alignment at scaffold_3:365633..367218- (Nannochloropsis oceanica)
TAGACTTGGCATGGACTCGAAGCGTATCAGTATCGCCAACAGGTGACGCG
CCCCGACGTTGCCGTTCCTTCTTCATTCTCTCACTCACTCGCTCTATGAT
CAGGCAACCAACACCCACGTACCAGACCGACACGTCTAGAGAAAAATGCC
AGCCTGGCCGCCACCGCGCGCCCGGCTGATACCTCCTGTCATCTTGTTCT
TCCTTTTCTCTACCCTGCCGCTCCTACTCCTTTTTGTCTCTGCCAGTGAA
GGAGCCGCCTCAACCCCAACAAAGAAGGACGTGCTGGTACTTGGGGGAAA
TGGGTTCCTTGGCGTGTATGCTGTTCAGGCCCTGGCGCATTCAGGGCACT
ATACCATCGCCATTGCCAATCGCAACACGAGTTATTTCGACTCTGCCGAG
CGCTTGGCGGCGACCGGTGTGATTTCACTTCATTGGGACAGACGCCACAC
GCCCTTTGGCGAAGCGCCCGAGATTCAAGCCTACTTCGCTACTCGACCGC
TTTTACATGCCATAATCGATTTTTCGTGCTATACTGGCGCGGCGGCCCAT
GATGTCGCGACCTATCTGCTGGAAGCGGACGTGCAGGTGGAGTGGTACGT
TTATATAAGCAGCGACTCCATCTACGAAGTGGGTTCGCCCAAGGCTCATC
CTGAGAAGCCCACGGAGGAGGGGATCGACGACCACCGTCCTTCTTCACTT
CAAGACCAGGCTCAGCTCAATGCTTGCGATGCCTACGCCCATGGCAAGCT
AGAGGCCGAAGAGGTGCTGCAGGCACTGCAGCCCGCCTCCAGCTGGTCCT
ACGTCTTTCTGCGCATTCCCGATGTGGTAGGCCCCCGAGACACCTCCTAC
CGATGGTGGTTCTATCAGATTCTGCTCAAGCTTCAATCGAGGACGCAAGT
GCCCTTGCCTTATGTGCAAGAAGATCGGGACGGGCGCCAGATGAGTTTGG
TGTATGTCAAGGACGTGGCGCGGGCTATTTTACAGGTGCTCGCGAATGGT
GATGAACACGACAGCAATATGAGCAAGCGCAAAGCCTCGGTCAAGAACAC
GGCTCTCAATCTGGCCCATGACGAAACTTGGACTTTCCCGCAAATCATGG
AGTGCATCGCGCAAGAAGTAGCCGAGAACATGTCGGCTTCACCACAGCCA
CCACAACTACGGTTCCCCCTGCTATTTGCCCTAAATCGGACGACTGACTT
CCCTAGTGTTAAAAGGGGTCCTATCTCAACCTTGCGGGCCCGCACGCTGC
TGGGATGGGAACCAACCCCTTGGTTGGAGATATTGCACAAGACGGTGGAG
TACTTCGAGTCAGAAGCCGTATGGCAGGACGCGCGCTTCGTCAAGGAGAG
AGAGGGAGTCCTGCGAATGGCACTCCAGCAAGTGGCAAAATATGATAAGC
AGGAAGAGTTTCTTAGCGCGATTCGCGATGTATACGAGTTGGATGTATCT
ATGTTGGACATACGCAATGCAGGGTGGAAGGCTGACGTCATTGTGGAGGA
TGCAATATGGACAGCGACGCACTCGGAGCTTTAAGCGACCAGAACGAAAA
TTGAGAGAAATGTATCACAATATATACCATCTGGCA
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Coding sequence (CDS) from alignment at scaffold_3:365633..367218-

>mRNA_140 ID=mRNA_140|Name=jgi.p|Nanoce1779_2|576347|organism=Nannochloropsis oceanica|type=CDS|length=1389bp|location=Sequence derived from alignment at scaffold_3:365633..367218- (Nannochloropsis oceanica)
ATGCCAGCCTGGCCGCCACCGCGCGCCCGGCTGATACCTCCTGTCATCTT
GTTCTTCCTTTTCTCTACCCTGCCGCTCCTACTCCTTTTTGTCTCTGCCA
GTGAAGGAGCCGCCTCAACCCCAACAAAGAAGGACGTGCTGGTACTTGGG
GGAAATGGGTTCCTTGGCGTGTATGCTGTTCAGGCCCTGGCGCATTCAGG
GCACTATACCATCGCCATTGCCAATCGCAACACGAGTTATTTCGACTCTG
CCGAGCGCTTGGCGGCGACCGGTGTGATTTCACTTCATTGGGACAGACGC
CACACGCCCTTTGGCGAAGCGCCCGAGATTCAAGCCTACTTCGCTACTCG
ACCGCTTTTACATGCCATAATCGATTTTTCGTGCTATACTGGCGCGGCGG
CCCATGATGTCGCGACCTATCTGCTGGAAGCGGACGTGCAGGTGGAGTGG
TACGTTTATATAAGCAGCGACTCCATCTACGAAGTGGGTTCGCCCAAGGC
TCATCCTGAGAAGCCCACGGAGGAGGGGATCGACGACCACCGTCCTTCTT
CACTTCAAGACCAGGCTCAGCTCAATGCTTGCGATGCCTACGCCCATGGC
AAGCTAGAGGCCGAAGAGGTGCTGCAGGCACTGCAGCCCGCCTCCAGCTG
GTCCTACGTCTTTCTGCGCATTCCCGATGTGGTAGGCCCCCGAGACACCT
CCTACCGATGGTGGTTCTATCAGATTCTGCTCAAGCTTCAATCGAGGACG
CAAGTGCCCTTGCCTTATGTGCAAGAAGATCGGGACGGGCGCCAGATGAG
TTTGGTGTATGTCAAGGACGTGGCGCGGGCTATTTTACAGGTGCTCGCGA
ATGGTGATGAACACGACAGCAATATGAGCAAGCGCAAAGCCTCGGTCAAG
AACACGGCTCTCAATCTGGCCCATGACGAAACTTGGACTTTCCCGCAAAT
CATGGAGTGCATCGCGCAAGAAGTAGCCGAGAACATGTCGGCTTCACCAC
AGCCACCACAACTACGGTTCCCCCTGCTATTTGCCCTAAATCGGACGACT
GACTTCCCTAGTGTTAAAAGGGGTCCTATCTCAACCTTGCGGGCCCGCAC
GCTGCTGGGATGGGAACCAACCCCTTGGTTGGAGATATTGCACAAGACGG
TGGAGTACTTCGAGTCAGAAGCCGTATGGCAGGACGCGCGCTTCGTCAAG
GAGAGAGAGGGAGTCCTGCGAATGGCACTCCAGCAAGTGGCAAAATATGA
TAAGCAGGAAGAGTTTCTTAGCGCGATTCGCGATGTATACGAGTTGGATG
TATCTATGTTGGACATACGCAATGCAGGGTGGAAGGCTGACGTCATTGTG
GAGGATGCAATATGGACAGCGACGCACTCGGAGCTTTAA
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Synonyms
Publications