jgi.p|Nanoce1779_2|227668, mRNA_14 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|227668
Unique Name	mRNA_14
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1925
Alignment location	scaffold_3:41908..44303 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	227754
Track	FilteredModels2
ProteinId	227668

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:41908..44303 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|227668	gene_14	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|227668	mRNA_14-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_14	CDS_14	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:41908..44303+
coding sequence from alignment at scaffold_3:41908..44303+

mRNA sequence

>mRNA_14 ID=mRNA_14|Name=jgi.p|Nanoce1779_2|227668|organism=Nannochloropsis oceanica|type=mRNA|length=1925bp
ACCACTCAGTCCGTGGCTCCTCCTCCCTTTAACCGTGCCACTGCCCCTGC
GTTTCCCTCCCTGGCCAGGACGAGCTCCGAACCCCGCCCGCCTGTGCATT
GCTTCACACGAGGCTCCATCCCTGCCTCCTCAGAGGCCACAGGCTTCAAG
AGGATGCCTCGTGACCTGGCCACCGGGCGACGGGTCTGCTTTTACTTCAA
TAACAAAGTTTGTGCAGCCAGCAATCGATGTCCTTTCGTGCATGTGAAGG
TGGATCCGTCTCTGATCACCCCCGGGACCTTCCACAAGCCAGTTCCCGCG
TCAGCTACCCCCACTGCCGCCCCTCTCTCCCTCCCTCCCTCCATCCATCC
ATCCCGCTCCCACTCCTCCCGCAATGGGGGCGAGGCAATGCACCTCCAGC
AGCTGCAGCAGCAGCAGCAGCAGCAGCAGCGGTACCGCACCCCTACCTCC
CGGCCATCCTCCTTTGTGCGCTCGTACTCTATGGGCAACGACAGCGGTAG
GGGTCATATCCCCTTCCCTCCCCCCCTACCGCAGGAGGTGCGGGGGGAAG
GGGAGGGAGGGGCCGAAGGAGAGAGGACGGAACGCAGGGTGCCGTTGTTG
CAGCCACAGCAGCAGCAGCATCAGCAGGAGGAGGAGGAGGAGGAGGAGGC
CATGTACGGGTATGAAGGAGGGGGTGGAGGGTATTGGGAAGGGCAGCAGC
AAGAGCAGCAGGTGTCTCCATCCGTTCATCGCCACTACATGCAACTACCG
CCAGCAGTAGCAGCCGAAGGAGGGGCGGGGAGAGAAAGAGGCAATGGCGA
GGAACAAAAAGGAGGAGGAGGAAAAGGAGGAGGAGGAAGAGGAGGAGGAG
AATTTCCGTTCCCCTCCTGGCGTCGGCAGAAAGGGAATAGAGAGAGAGGC
AGGAGGGGGTGGACTAGGGGGAGTTCGAGGGCAGTGGAAGTGGTTGAGGG
AGAAGGGGAGGAGGGAGACGGTGCATACAGTGAATCCACCCACCCCCTCC
ACCAGCAGTCCTACAACTATAACGTCGATGGCCCTCCCGCCCCCTCCTTT
CTCCCTGCCCAGGCCCCCCTCGTTGGCGGTGCTTTTCATCCTCCACAACA
CCTTCCTCCTTCGTTCTCCTCATACTACGCGCGAGGGCCAGCTGCTGCTG
TGGGTCCTCTTCGTCCTTCTCCCCTTCCTCCAGCTCCTCCCGCCTACATG
TACTACCAGTACATCCCTCCCTCGCACCCTCCCTATCCTATTCTCTACGC
CTCCTCCCACCCACCCGCCTACCCTCCCTACTTACCTGAAGGCGCCGCGG
CTCCGTCCATACACTTGATGGGAGGCAGGGAAGGAGGAGTGGGGGCAGAT
GGAGGGAGGGAAGGAGGATGGGAGAAACAATGGTTGGAGCAGCAGCAGCA
TATCTACCACCCACACATGCAGGATGAGTACCAGCAGATGCATATGGCGG
ATGTCGCGGAGTCGAAGCGGGGATGGGAGGGAGGGACTGGGTGGGGAAGG
GAGGGAGGGGGAGAGAGAGAGATGGAGAGAGGGAGGGAGGGAGGAAGGGA
GAGGTATTCCTATTACCAGCAACAATACCACCATCGTTAGCTCAAACAGC
ATCACACACTGGCTGCAGTGGAAAGAGTAGAAGCAATAGCAGCAGTACTC
GTAGTAGTATAAGTAGCAATAGTAGCTGTAGCAGCACCAGCACCAGCATT
TATGTCAAAGCTTAAAGCAACAAGATAGCGATCACTCAAAAGTATCGAGC
GGATAGGGACAAGGGGAAACAGGAAAATGCGGAGGAGGGTGAAGATGAGA
AGGAAAACATCTAAGGCAATGTCGGCAACGTAGGGGAGAGGGTAGAAAAC
TATAAGGGACGGAGGGAGAGAGGAGGAGAATAGGGATTGCAATTTTGAAG
AGGCAAAGAGAGAAGAAGGGTCGTT

protein sequence of jgi.p|Nanoce1779_2|227668

>mRNA_14-protein ID=mRNA_14-protein|Name=jgi.p|Nanoce1779_2|227668|organism=Nannochloropsis oceanica|type=polypeptide|length=479bp
MPRDLATGRRVCFYFNNKVCAASNRCPFVHVKVDPSLITPGTFHKPVPAS
ATPTAAPLSLPPSIHPSRSHSSRNGGEAMHLQQLQQQQQQQQRYRTPTSR
PSSFVRSYSMGNDSGRGHIPFPPPLPQEVRGEGEGGAEGERTERRVPLLQ
PQQQQHQQEEEEEEEAMYGYEGGGGGYWEGQQQEQQVSPSVHRHYMQLPP
AVAAEGGAGRERGNGEEQKGGGGKGGGGRGGGEFPFPSWRRQKGNRERGR
RGWTRGSSRAVEVVEGEGEEGDGAYSESTHPLHQQSYNYNVDGPPAPSFL
PAQAPLVGGAFHPPQHLPPSFSSYYARGPAAAVGPLRPSPLPPAPPAYMY
YQYIPPSHPPYPILYASSHPPAYPPYLPEGAAAPSIHLMGGREGGVGADG
GREGGWEKQWLEQQQHIYHPHMQDEYQQMHMADVAESKRGWEGGTGWGRE
GGGEREMERGREGGRERYSYYQQQYHHR*

mRNA from alignment at scaffold_3:41908..44303+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_14 ID=mRNA_14|Name=jgi.p|Nanoce1779_2|227668|organism=Nannochloropsis oceanica|type=mRNA|length=2396bp|location=Sequence derived from alignment at scaffold_3:41908..44303+ (Nannochloropsis oceanica)
ACCACTCAGTCCGTGGCTCCTCCTCCCTTTAACCGTGCCACTGCCCCTGC
GTTTCCCTCCCTGGCCAGGACGAGCTCCGAACCCCGCCCGCCTGTGCATT
GCTTCACACGAGGCTCCATCCCTGCCTCCTCAGAGGTAACCTCCCCCTCC
CTCCTTTCCTCCCTTCGTTCCTTCCTCTTTCTTCATTTTATACTGCTGTG
GTCTGTTGCTGATTTTCCTGCTGTCGTCATCCACCCCTCCCCCTTCCTAC
CTTCCCTCCTCTCCTTCCTCCTTCGAGTTTTGTTGTATATCAATGTGTGC
CAACGGACCTTCTTTCTCTTCCCTTCACCCCGTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCAAAGGCCACAGGCTTCAAGAGGATGCCTCGTGA
CCTGGCCACCGGGCGACGGGTCTGCTTTTACTTCAATAACAAAGTTTGTG
CAGCCAGCAATCGATGTCCTTTCGTGCATGTGAAGGTGAAGAAGGGAGGG
AGGGAGGGAGGAGGGAAGGAGTGTTGTTTGGTGTATGGAGTCACATGACG
AGTGTAAGGCCTGTGCGGTCACTCGTTGTGATGTTTGTCGTCCGGACCTG
AGAGAGGGAGGGGAGGAAAAAGGGTGGACGTTTAAGGAATGCCACCTTCT
TCTTGGTGCTTAACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTT
CCTCCCTCCCTCCCTCCCAGGTGGATCCGTCTCTGATCACCCCCGGGACC
TTCCACAAGCCAGTTCCCGCGTCAGCTACCCCCACTGCCGCCCCTCTCTC
CCTCCCTCCCTCCATCCATCCATCCCGCTCCCACTCCTCCCGCAATGGGG
GCGAGGCAATGCACCTCCAGCAGCTGCAGCAGCAGCAGCAGCAGCAGCAG
CGGTACCGCACCCCTACCTCCCGGCCATCCTCCTTTGTGCGCTCGTACTC
TATGGGCAACGACAGCGGTAGGGGTCATATCCCCTTCCCTCCCCCCCTAC
CGCAGGAGGTGCGGGGGGAAGGGGAGGGAGGGGCCGAAGGAGAGAGGACG
GAACGCAGGGTGCCGTTGTTGCAGCCACAGCAGCAGCAGCATCAGCAGGA
GGAGGAGGAGGAGGAGGAGGCCATGTACGGGTATGAAGGAGGGGGTGGAG
GGTATTGGGAAGGGCAGCAGCAAGAGCAGCAGGTGTCTCCATCCGTTCAT
CGCCACTACATGCAACTACCGCCAGCAGTAGCAGCCGAAGGAGGGGCGGG
GAGAGAAAGAGGCAATGGCGAGGAACAAAAAGGAGGAGGAGGAAAAGGAG
GAGGAGGAAGAGGAGGAGGAGAATTTCCGTTCCCCTCCTGGCGTCGGCAG
AAAGGGAATAGAGAGAGAGGCAGGAGGGGGTGGACTAGGGGGAGTTCGAG
GGCAGTGGAAGTGGTTGAGGGAGAAGGGGAGGAGGGAGACGGTGCATACA
GTGAATCCACCCACCCCCTCCACCAGCAGTCCTACAACTATAACGTCGAT
GGCCCTCCCGCCCCCTCCTTTCTCCCTGCCCAGGCCCCCCTCGTTGGCGG
TGCTTTTCATCCTCCACAACACCTTCCTCCTTCGTTCTCCTCATACTACG
CGCGAGGGCCAGCTGCTGCTGTGGGTCCTCTTCGTCCTTCTCCCCTTCCT
CCAGCTCCTCCCGCCTACATGTACTACCAGTACATCCCTCCCTCGCACCC
TCCCTATCCTATTCTCTACGCCTCCTCCCACCCACCCGCCTACCCTCCCT
ACTTACCTGAAGGCGCCGCGGCTCCGTCCATACACTTGATGGGAGGCAGG
GAAGGAGGAGTGGGGGCAGATGGAGGGAGGGAAGGAGGATGGGAGAAACA
ATGGTTGGAGCAGCAGCAGCATATCTACCACCCACACATGCAGGATGAGT
ACCAGCAGATGCATATGGCGGATGTCGCGGAGTCGAAGCGGGGATGGGAG
GGAGGGACTGGGTGGGGAAGGGAGGGAGGGGGAGAGAGAGAGATGGAGAG
AGGGAGGGAGGGAGGAAGGGAGAGGTATTCCTATTACCAGCAACAATACC
ACCATCGTTAGCTCAAACAGCATCACACACTGGCTGCAGTGGAAAGAGTA
GAAGCAATAGCAGCAGTACTCGTAGTAGTATAAGTAGCAATAGTAGCTGT
AGCAGCACCAGCACCAGCATTTATGTCAAAGCTTAAAGCAACAAGATAGC
GATCACTCAAAAGTATCGAGCGGATAGGGACAAGGGGAAACAGGAAAATG
CGGAGGAGGGTGAAGATGAGAAGGAAAACATCTAAGGCAATGTCGGCAAC
GTAGGGGAGAGGGTAGAAAACTATAAGGGACGGAGGGAGAGAGGAGGAGA
ATAGGGATTGCAATTTTGAAGAGGCAAAGAGAGAAGAAGGGTCGTT

Coding sequence (CDS) from alignment at scaffold_3:41908..44303+

>mRNA_14 ID=mRNA_14|Name=jgi.p|Nanoce1779_2|227668|organism=Nannochloropsis oceanica|type=CDS|length=2874bp|location=Sequence derived from alignment at scaffold_3:41908..44303+ (Nannochloropsis oceanica)
ATGCCTCGTGACCTGGCCACCGGGCGACGGGTCTGCTTTTACTTCAATAA
CAAAGTTTGTGCAGCCAGCAATCGATGTCCTTTCGTGCATGTGAAGGTGG
ATCCGTCTCTGATCACCCCCGGGACCTTCCACAAGCCAGTTCCCGCGTCA
GCTACCCCCACTGCCGCCCCTCTCTCCCTCCCTCCCTCCATCCATCCATC
CCGCTCCCACTCCTCCCGCAATGGGGGCGAGGCAATGCACCTCCAGCAGC
TGCAGCAGCAGCAGCAGCAGCAGCAGCGGTACCGCACCCCTACCTCCCGG
CCATCCTCCTTTGTGCGCTCGTACTCTATGGGCAACGACAGCGGTAGGGG
TCATATCCCCTTCCCTCCCCCCCTACCGCAGGAGGTGCGGGGGGAAGGGG
AGGGAGGGGCCGAAGGAGAGAGGACGGAACGCAGGGTGCCGTTGTTGCAG
CCACAGCAGCAGCAGCATCAGCAGGAGGAGGAGGAGGAGGAGGAGGCCAT
GTACGGGTATGAAGGAGGGGGTGGAGGGTATTGGGAAGGGCAGCAGCAAG
AGCAGCAGGTGTCTCCATCCGTTCATCGCCACTACATGCAACTACCGCCA
GCAGTAGCAGCCGAAGGAGGGGCGGGGAGAGAAAGAGGCAATGGCGAGGA
ACAAAAAGGAGGAGGAGGAAAAGGAGGAGGAGGAAGAGGAGGAGGAGAAT
TTCCGTTCCCCTCCTGGCGTCGGCAGAAAGGGAATAGAGAGAGAGGCAGG
AGGGGGTGGACTAGGGGGAGTTCGAGGGCAGTGGAAGTGGTTGAGGGAGA
AGGGGAGGAGGGAGACGGTGCATACAGTGAATCCACCCACCCCCTCCACC
AGCAGTCCTACAACTATAACGTCGATGGCCCTCCCGCCCCCTCCTTTCTC
CCTGCCCAGGCCCCCCTCGTTGGCGGTGCTTTTCATCCTCCACAACACCT
TCCTCCTTCGTTCTCCTCATACTACGCGCGAGGGCCAGCTGCTGCTGTGG
GTCCTCTTCGTCCTTCTCCCCTTCCTCCAGCTCCTCCCGCCTACATGTAC
TACCAGTACATCCCTCCCTCGCACCCTCCCTATCCTATTCTCTACGCCTC
CTCCCACCCACCCGCCTACCCTCCCTACTTACCTGAAGGCGCCGCGGCTC
CGTCCATACACTTGATGGGAGGCAGGGAAGGAGGAGTGGGGGCAGATGGA
GGGAGGGAAGGAGGATGGGAGAAACAATGGTTGGAGCAGCAGCAGCATAT
CTACCACCCACACATGCAGGATGAGTACCAGCAGATGCATATGGCGGATG
TCGCGGAGTCGAAGCGGGGATGGGAGGGAGGGACTGGGTGGGGAAGGGAG
GGAGGGGGAGAGAGAGAGATGGAGAGAGGGAGGGAGGGAGGAAGGGAGAG
GTATTCCTATTACCAGCAACAATACCACCATCGTTAGATGCCTCGTGACC
TGGCCACCGGGCGACGGGTCTGCTTTTACTTCAATAACAAAGTTTGTGCA
GCCAGCAATCGATGTCCTTTCGTGCATGTGAAGGTGGATCCGTCTCTGAT
CACCCCCGGGACCTTCCACAAGCCAGTTCCCGCGTCAGCTACCCCCACTG
CCGCCCCTCTCTCCCTCCCTCCCTCCATCCATCCATCCCGCTCCCACTCC
TCCCGCAATGGGGGCGAGGCAATGCACCTCCAGCAGCTGCAGCAGCAGCA
GCAGCAGCAGCAGCGGTACCGCACCCCTACCTCCCGGCCATCCTCCTTTG
TGCGCTCGTACTCTATGGGCAACGACAGCGGTAGGGGTCATATCCCCTTC
CCTCCCCCCCTACCGCAGGAGGTGCGGGGGGAAGGGGAGGGAGGGGCCGA
AGGAGAGAGGACGGAACGCAGGGTGCCGTTGTTGCAGCCACAGCAGCAGC
AGCATCAGCAGGAGGAGGAGGAGGAGGAGGAGGCCATGTACGGGTATGAA
GGAGGGGGTGGAGGGTATTGGGAAGGGCAGCAGCAAGAGCAGCAGGTGTC
TCCATCCGTTCATCGCCACTACATGCAACTACCGCCAGCAGTAGCAGCCG
AAGGAGGGGCGGGGAGAGAAAGAGGCAATGGCGAGGAACAAAAAGGAGGA
GGAGGAAAAGGAGGAGGAGGAAGAGGAGGAGGAGAATTTCCGTTCCCCTC
CTGGCGTCGGCAGAAAGGGAATAGAGAGAGAGGCAGGAGGGGGTGGACTA
GGGGGAGTTCGAGGGCAGTGGAAGTGGTTGAGGGAGAAGGGGAGGAGGGA
GACGGTGCATACAGTGAATCCACCCACCCCCTCCACCAGCAGTCCTACAA
CTATAACGTCGATGGCCCTCCCGCCCCCTCCTTTCTCCCTGCCCAGGCCC
CCCTCGTTGGCGGTGCTTTTCATCCTCCACAACACCTTCCTCCTTCGTTC
TCCTCATACTACGCGCGAGGGCCAGCTGCTGCTGTGGGTCCTCTTCGTCC
TTCTCCCCTTCCTCCAGCTCCTCCCGCCTACATGTACTACCAGTACATCC
CTCCCTCGCACCCTCCCTATCCTATTCTCTACGCCTCCTCCCACCCACCC
GCCTACCCTCCCTACTTACCTGAAGGCGCCGCGGCTCCGTCCATACACTT
GATGGGAGGCAGGGAAGGAGGAGTGGGGGCAGATGGAGGGAGGGAAGGAG
GATGGGAGAAACAATGGTTGGAGCAGCAGCAGCATATCTACCACCCACAC
ATGCAGGATGAGTACCAGCAGATGCATATGGCGGATGTCGCGGAGTCGAA
GCGGGGATGGGAGGGAGGGACTGGGTGGGGAAGGGAGGGAGGGGGAGAGA
GAGAGATGGAGAGAGGGAGGGAGGGAGGAAGGGAGAGGTATTCCTATTAC
CAGCAACAATACCACCATCGTTAG

Synonyms

Publications