jgi.p|Nanoce1779_2|5434, mRNA_1398 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|5434
Unique NamemRNA_1398
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1409
Alignment locationscaffold_1:461229..462794 -

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Properties
Property NameValue
TranscriptId5520
TrackFilteredModels2
ProteinId5434
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:461229..462794 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|5434gene_1398Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|5434mRNA_1398-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1398CDS_1398Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1398 ID=mRNA_1398|Name=jgi.p|Nanoce1779_2|5434|organism=Nannochloropsis oceanica|type=mRNA|length=1409bp
ACGGACCAACCGGAGTGCAAGAGCAGCAGCACTACGACGAACACCTTGTG
GCGCACCAAGTGGATCGAGGGCAGGATGGGTGAGGGATGCATGGTGTTTT
GTTTCATGGAAATCAATTGACGTGTCGCTTCCTTCTTGTTGCACTGCAGC
AGGAGACATCTGCACGACGTTGCGGCGAGGGGTAAAAATGTAACAGATTG
TCAAACCAACCCAAACACAACCACGACCACAAGCACACAGGCAGCACATA
CGCCACAGATCACGGGCAGGCGTGGGAATATGCTTCGATCGCGGCACCTG
GCTATGCATGGGGGCCTAAGAAGAGGGTGGCGGCGGTGCCTTGCCGTTGG
AGGGGAGGCTACCGCGGCATGTCGGCCGAGTGCTCGCGGCACCTCTACAG
CCTCCTCCCACCCCGCGCTGCCATATCAATTTTCATCATACCCGCCAATT
TCGCCGTGGCAGCGACGGCGGGCACGGCTGGAAGGGAAATATGTCCTGGC
TCTTGTCCGACAGCAGCATCAGCATCAGCAGCAGCAGGAGGGAGGATACC
ATCACCACCAGCATATATATGCTCGCCTCCTTCGCCACTTACATGCGCCC
CCAACACCAGTCAAGCCAACTGTTCTCACAAAAGAAAATAATGAGGATAC
GTTGGGCACAAGTAGCACCAGCCGCACCGCTATTCCAACTCCCACGCGCG
CCCCATCCTCCAGAGAGACCTATTGGACAGTGCCCAACATAATAACCTTG
TCACGCATCGCTTCTTCCCCCTTGCTCGCAATTCTTATTTTGCAAGGAAA
ATATGCTTACGCCGTAGCCGGGCTAGCTGTGGCCGCGGGTTCGGATTGGT
TGGACGGACATATTGCAAAAAATTACAACCAGTCGTCGGTATTAGGGAGT
TTCCTCGACCCCTTTGCAGACAAGGTCTTAGTGACCGCCTTGGCCGTGCC
ACTCGCCATGCAAGGGTTCTTGCCCACACCCTTGGTGATTACAGTGGTGG
GCAGAGATGCCCTATTGATTGGTGGCTCATTTATTATGCGTGTGCGGAAC
CGGCCGACGGGAGCGCCGTTTTTTGACACGACTTCGTCGGCTACTTTCCA
GATTACGCCTAATTTGTTGAGTAAAATCAATACAGCCCTGCAGTTCGGTG
TGCTGACATTTGCACTGTCCCGGGCTCTGTGGGGAGAAGGCATTCCTGTG
GGCTTGGATGATTTGTTTGAGCCGCTTTGCTGGCTTACGGGCGGCACGAC
GATCGGCTCTGGCTTGGCCTATCTGCAAGGGGGGGGCACGGGCCAGCTAC
TGCTGAAGAATCTCAGGCTTAAGGAAGGAGAGACCGCCACAGCGGATTCG
GCGGATGGCAAGGACAGCAGAGAGAAGGAGAAGAAGGTAGACGAGGAGAA
ATAATCAAT
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protein sequence of jgi.p|Nanoce1779_2|5434

>mRNA_1398-protein ID=mRNA_1398-protein|Name=jgi.p|Nanoce1779_2|5434|organism=Nannochloropsis oceanica|type=polypeptide|length=375bp
MLRSRHLAMHGGLRRGWRRCLAVGGEATAACRPSARGTSTASSHPALPYQ
FSSYPPISPWQRRRARLEGKYVLALVRQQHQHQQQQEGGYHHHQHIYARL
LRHLHAPPTPVKPTVLTKENNEDTLGTSSTSRTAIPTPTRAPSSRETYWT
VPNIITLSRIASSPLLAILILQGKYAYAVAGLAVAAGSDWLDGHIAKNYN
QSSVLGSFLDPFADKVLVTALAVPLAMQGFLPTPLVITVVGRDALLIGGS
FIMRVRNRPTGAPFFDTTSSATFQITPNLLSKINTALQFGVLTFALSRAL
WGEGIPVGLDDLFEPLCWLTGGTTIGSGLAYLQGGGTGQLLLKNLRLKEG
ETATADSADGKDSREKEKKVDEEK*
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mRNA from alignment at scaffold_1:461229..462794-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1398 ID=mRNA_1398|Name=jgi.p|Nanoce1779_2|5434|organism=Nannochloropsis oceanica|type=mRNA|length=1566bp|location=Sequence derived from alignment at scaffold_1:461229..462794- (Nannochloropsis oceanica)
ACGGACCAACCGGAGTGCAAGAGCAGCAGCACTACGACGAACACCTTGTG
GCGCACCAAGTGGATCGAGGGCAGGATGGGTGAGGGATGCATGGTGTTTT
GTTTCATGGAAATCAATTGACGTGTCGCTTCCTTCTTGTTGCACTGCAGC
AGGAGACATCTGCACGACGTTGCGGCGAGGGGTAAAAATGTAACAGATTG
TCAAACCAACCCAAACACAACCACGACCACAAGCACACAGGCAGCACATA
CGCCACAGATCACGGGCAGGCGTGGGAATATGCTTCGATCGCGGCACCTG
GCTATGCATGGGGGCCTAAGAAGAGGGTGGCGGCGGTGCCTTGCCGTTGG
AGGGGAGGCTACCGCGGCATGTCGGCCGAGTGCTCGCGGCACCTCTACAG
CCTCCTCCCACCCCGCGCTGCCATATCAATTTTCATCATACCCGCCAATT
TCGCCGTGGCAGCGACGGCGGGCACGGCTGGAAGGGAAATATGTCCTGGC
TCTTGTCCGACAGCAGCATCAGCATCAGCAGCAGCAGGAGGGAGGATACC
ATCACCACCAGCATATATATGCTCGCCTCCTTCGCCACTTACATGCGCCC
CCAACACCAGTCAAGCCAACTGTTCTCACAAAAGAAAATAATGAGGATAC
GTTGGGCACAAGTAGCACCAGCCGCACCGCTATTCCAACTCCCACGCGCG
CCCCATCCTCCAGAGAGACCTATTGGACAGTGCCCAACATAATAACCTTG
TCACGCATCGCTTCTTCCCCCTTGCTCGCAATTCTTATTTTGCAAGGAAA
ATATGCTTACGCCGTAGCCGGGCTAGCTGTGGCCGCGGGTTCGGATTGGT
TGGACGGACATATTGCAAAAAATTACAACCAGTCGTCGGTATTAGGGAGT
TTCCTCGACCCCTTTGCAGACAAGGTCTTAGTGACCGCCTTGGCCGTGCC
ACTCGCCATGCAAGGGTTCTTGCCCACACCCTTGGTGATTACAGTGGTGG
GCAGAGATGCCCTATTGATTGGTGGCTCATTTATTATGCGTGTGCGGAAC
CGGCCGACGGGAGCGCCGTTTTTTGACACGACTTCGTCGGCTACTTTCCA
GATTACGCCTAATTTGTTGAGTAAAATCAATACAGCCCTGCAGTTCGGTG
TGCTGACATTTGCACTGTCCCGGGCTCTGTGGGGAGAAGGCATTCCTGTG
GGCTTGGATGATTTGTTTGAGCCGCTTTGGTAGGTTTAGAGAGGGAGGGG
GAAGAAGGGGAGGAGAGGGGGCCAGCGGATGGGATTGGAATGGCCTCTGT
TGCAATGATTTCTCGCCTTCGGTCTCACAGACATGCGCATATGCATCTAT
TTTCCTCGTCCTCCACTCTATCACCATACCTTACAGCTGGCTTACGGGCG
GCACGACGATCGGCTCTGGCTTGGCCTATCTGCAAGGGGGGGGCACGGGC
CAGCTACTGCTGAAGAATCTCAGGCTTAAGGAAGGAGAGACCGCCACAGC
GGATTCGGCGGATGGCAAGGACAGCAGAGAGAAGGAGAAGAAGGTAGACG
AGGAGAAATAATCAAT
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Coding sequence (CDS) from alignment at scaffold_1:461229..462794-

>mRNA_1398 ID=mRNA_1398|Name=jgi.p|Nanoce1779_2|5434|organism=Nannochloropsis oceanica|type=CDS|length=2250bp|location=Sequence derived from alignment at scaffold_1:461229..462794- (Nannochloropsis oceanica)
CTGGCTTACGGGCGGCACGACGATCGGCTCTGGCTTGGCCTATCTGCAAG
GGGGGGGCACGGGCCAGCTACTGCTGAAGAATCTCAGGCTTAAGGAAGGA
GAGACCGCCACAGCGGATTCGGCGGATGGCAAGGACAGCAGAGAGAAGGA
GAAGAAGGTAGACGAGGAGAAATAAATGCTTCGATCGCGGCACCTGGCTA
TGCATGGGGGCCTAAGAAGAGGGTGGCGGCGGTGCCTTGCCGTTGGAGGG
GAGGCTACCGCGGCATGTCGGCCGAGTGCTCGCGGCACCTCTACAGCCTC
CTCCCACCCCGCGCTGCCATATCAATTTTCATCATACCCGCCAATTTCGC
CGTGGCAGCGACGGCGGGCACGGCTGGAAGGGAAATATGTCCTGGCTCTT
GTCCGACAGCAGCATCAGCATCAGCAGCAGCAGGAGGGAGGATACCATCA
CCACCAGCATATATATGCTCGCCTCCTTCGCCACTTACATGCGCCCCCAA
CACCAGTCAAGCCAACTGTTCTCACAAAAGAAAATAATGAGGATACGTTG
GGCACAAGTAGCACCAGCCGCACCGCTATTCCAACTCCCACGCGCGCCCC
ATCCTCCAGAGAGACCTATTGGACAGTGCCCAACATAATAACCTTGTCAC
GCATCGCTTCTTCCCCCTTGCTCGCAATTCTTATTTTGCAAGGAAAATAT
GCTTACGCCGTAGCCGGGCTAGCTGTGGCCGCGGGTTCGGATTGGTTGGA
CGGACATATTGCAAAAAATTACAACCAGTCGTCGGTATTAGGGAGTTTCC
TCGACCCCTTTGCAGACAAGGTCTTAGTGACCGCCTTGGCCGTGCCACTC
GCCATGCAAGGGTTCTTGCCCACACCCTTGGTGATTACAGTGGTGGGCAG
AGATGCCCTATTGATTGGTGGCTCATTTATTATGCGTGTGCGGAACCGGC
CGACGGGAGCGCCGTTTTTTGACACGACTTCGTCGGCTACTTTCCAGATT
ACGCCTAATTTGTTGAGTAAAATCAATACAGCCCTGCAGTTCGGTGTGCT
GACATTTGCACTGTCCCGGGCTCTGTGGGGAGAAGGCATTCCTGTGGGCT
TGGATGATTTGTTTGAGCCGCTTTGCTGGCTTACGGGCGGCACGACGATC
GGCTCTGGCTTGGCCTATCTGCAAGGGGGGGGCACGGGCCAGCTACTGCT
GAAGAATCTCAGGCTTAAGGAAGGAGAGACCGCCACAGCGGATTCGGCGG
ATGGCAAGGACAGCAGAGAGAAGGAGAAGAAGGTAGACGAGGAGAAATAA
ATGCTTCGATCGCGGCACCTGGCTATGCATGGGGGCCTAAGAAGAGGGTG
GCGGCGGTGCCTTGCCGTTGGAGGGGAGGCTACCGCGGCATGTCGGCCGA
GTGCTCGCGGCACCTCTACAGCCTCCTCCCACCCCGCGCTGCCATATCAA
TTTTCATCATACCCGCCAATTTCGCCGTGGCAGCGACGGCGGGCACGGCT
GGAAGGGAAATATGTCCTGGCTCTTGTCCGACAGCAGCATCAGCATCAGC
AGCAGCAGGAGGGAGGATACCATCACCACCAGCATATATATGCTCGCCTC
CTTCGCCACTTACATGCGCCCCCAACACCAGTCAAGCCAACTGTTCTCAC
AAAAGAAAATAATGAGGATACGTTGGGCACAAGTAGCACCAGCCGCACCG
CTATTCCAACTCCCACGCGCGCCCCATCCTCCAGAGAGACCTATTGGACA
GTGCCCAACATAATAACCTTGTCACGCATCGCTTCTTCCCCCTTGCTCGC
AATTCTTATTTTGCAAGGAAAATATGCTTACGCCGTAGCCGGGCTAGCTG
TGGCCGCGGGTTCGGATTGGTTGGACGGACATATTGCAAAAAATTACAAC
CAGTCGTCGGTATTAGGGAGTTTCCTCGACCCCTTTGCAGACAAGGTCTT
AGTGACCGCCTTGGCCGTGCCACTCGCCATGCAAGGGTTCTTGCCCACAC
CCTTGGTGATTACAGTGGTGGGCAGAGATGCCCTATTGATTGGTGGCTCA
TTTATTATGCGTGTGCGGAACCGGCCGACGGGAGCGCCGTTTTTTGACAC
GACTTCGTCGGCTACTTTCCAGATTACGCCTAATTTGTTGAGTAAAATCA
ATACAGCCCTGCAGTTCGGTGTGCTGACATTTGCACTGTCCCGGGCTCTG
TGGGGAGAAGGCATTCCTGTGGGCTTGGATGATTTGTTTGAGCCGCTTTG
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Synonyms
Publications