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Properties
Property Name | Value |
TranscriptId | 572058 |
Track | FilteredModels2 |
ProteinId | 571972 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_1 | supercontig | scaffold_1:458955..462345 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1397 ID=mRNA_1397|Name=jgi.p|Nanoce1779_2|571972|organism=Nannochloropsis oceanica|type=mRNA|length=3102bp CAGCCACACAGACGCCCCAGCTTCAACTCTCAACACACGATTTGCCAGAG AGGGTCGTGCGCTCTGGACTGTAGAAAGCCTTTTCCATAGTGGTCGCCCT GCCTGTCACGCTCAAACTTATGCCTTTTCGACGGGCTGCATCAGCCTGGG CCTCGGCCACAGCATCGTTGCCAGCCTTGGTGGACCCAACTTTCCTTTGC GGCACTGCCATCGTGGGCCTCGTCGTCATGTACTACATGGTCAGAGGCCG GAGGTGTGCACGAGCTTTGCGTCCTTCCCCAGGGGTGATTCGGAGGAAAA TGAGTTTCTGTTCGGCGGCCTGTGCGGATGGTCCTATGCCTGATCACGCC AAGATGAATCCTGTCGACCCTATTATCAATGCTGTGGTGCTTTTTGAGGG AGAGGCGCCCACGCGTGCGGCTGTGGAATCGGCTATCTTGCCGCTCTTTG AATTCGAGCGGTTTCGCTCCCGGAAGGTCAAAATTCATGACGATTGGTAT TGGGAAGTGCTGCCTTCCTTTGACGCCAGAACGCATGTGATAGAAGACTC TTTCAAGGGTGCCAGCATCGATGACTTGTTCCTTCGCCTGGAGGTGTGGT CTCAGAAACCCCTGCATGTGCCGGCGGATGGGCCCGCATTTGAATTTGCT TTGCTCCGAAACCAGGATAAGAAGGGGCCCTCGGCAGTGATTTGTCGAAT CAACCATGCGATTGGTGATGGTGTCTCTCTGGCCAAGCTGATTCCCCACG TCTTCAAGGACATTAATGGGCAGTCCCTACCGATCGGGGAGAAGTTTCGC CGGCGGGAAGCGGGGTTTAAGCCAACTTTTCGATTTCCGTTCACCTTGCT ATTTTCGCTTTTCAAAGTATTGGGTACGCCCACTACGGCGTTTGATACTG ACGTGGGGTTGACGATTCCGGATAAAAAGAATATTACCTTTACAGGGCGT CGGTGCATTGTGCGTATTCCCACAGTAAAGCTTTCATTCATCAAGAGCAT TAAAAATGCGGCGAATGTGACTGTGAACGATGTAGTGATGAGCGCGGTAG CCGGGGCCGTGCATCGATTTCGTTGCACGCGAAAAGACCCTATGATGCTC GATCCTTTGTCTCATTGCAAAGTCCGCGTTCGCGCTTTGATGCCTGTGGC TTTGCCGCGGCAGGAGGGAGATCCGGTCAAGGCTTTGCGAAACAAGTGGA GTTTCGCTTCCGTGGCGATGCCCGTGGGGGTAAAGGGGAGTTTGGAACGC TTGCATGCAGCGAATGCCACGATGACTGCATTGAAGAACAGTCCGATAGT GATTGTGCAGAATATGGTCGAGGCTAATCTAGGGGCGCGCTTGCCGTGGA CAGTAGCGAAACAAACTGCATTTGACTCGTTTGTGAGGCACACGTTTGTA TTTAGCAATGTTCCGGGTCCGAACATGCCTATTACGTTTGCCGGTCGGGA AGTGACGGGCCTGTACATGGCATTTGCGAATTTGATTCCTCAGGTGGGCG CTCTGTCCTTGAATGGGAAGATCTTTACCTGCCTGGTTCTGGACGACGCG GTCACGCCTGGAGCCCGTGAACTCGGAGAGCATTTCATTGACGAGTTGAT GGACTTGGCTCGCAGGACGGGTTTGGAGAATGTGAAGAAGGAGGATATTT TTGGTTGAGAGCCTCAGGGGAGAGAGGGAGGGAGGGGGTAGGGGAATGAT GGAGATGGTTTTTGTACATGCGCGTATGTCGGTGGCTGCCGCGGCTGTCA TTGGCGAGGCGATTCGTCGAACAAATAGAATAAATTTATAAGAGAATGAA GGTGAAGAAAGAACAACAACCACTGCCGGGAATGGTGTCTCCTACGTTTT GGGTTGCTGCTACGTTATTATTACTGTCGTGCCCGTTCTGTCTGACTGCT GCTGCTGCTGCTGCTTATGCTGCTGCTGCTGATGGTGGTGATGCTGGTGT TTCTTTAACTGGCATTACCTGTCCTTTCTTTCTCACATTTTCCCTTGCGG ACTGATTGGGTCTTCACTTGTTTTTTCGACAATCGAAGAAGACGTTTTTG ACCACCCTACAGGTCCCATGTGCTCTATTTTATTCTACCCTGTCACTTTC CGTGTCATTCGTCATGGTGTCGTTTCCGTGCCACCGACGTACATTGATTA TTTCTCCTCGTCTACCTTCTTCTCCTTCTCTCTGCTGTCCTTGCCATCCG CCGAATCCGCTGTGGCGGTCTCTCCTTCCTTAAGCCTGAGATTCTTCAGC AGTAGCTGGCCCGTGCCCCCCCCTTGCAGATAGGCCAAGCCAGAGCCGAT CGTCGTGCCGCCCGTAAGCCAGCAAAGCGGCTCAAACAAATCATCCAAGC CCACAGGAATGCCTTCTCCCCACAGAGCCCGGGACAGTGCAAATGTCAGC ACACCGAACTGCAGGGCTGTATTGATTTTACTCAACAAATTAGGCGTAAT CTGGAAAGTAGCCGACGAAGTCGTGTCAAAAAACGGCGCTCCCGTCGGCC GGTTCCGCACACGCATAATAAATGAGCCACCAATCAATAGGGCATCTCTG CCCACCACTGTAATCACCAAGGGTGTGGGCAAGAACCCTTGCATGGCGAG TGGCACGGCCAAGGCGGTCACTAAGACCTTGTCTGCAAAGGGGTCGAGGA AACTCCCTAATACCGACGACTGGTTGTAATTTTTTGCAATATGTCCGTCC AACCAATCCGAACCCGCGGCCACAGCTAGCCCGGCTACGGCGTAAGCATA TTTTCCTTGCAAAATAAGAATTGCGAGCAAGGGGGAAGAAGCGATGCGTG ACAAGGTTATTATGTTGGGCACTGTCCAATAGGTCTCTCTGGAGGATGGG GCGCGCGTGGGAGTTGGAATAGCGGTGCGGCTGGTGCTACTTGTGCCCAA CGTATCCTCATTATTTTCTTTTGTGAGAACAGTTGGCTTGACTGGTGTTG GGGGCGCATGTAAGTGGCGAAGGAGGCGAGCATATATATGCTGGTGGTGA TGGTATCCTCCCTCCTGCTGCTGCTGATGCTGATGCTGCTGTCGGACAAG AGCCAGGACATATTTCCCTTCCAGCCGTGCCCGCCGTCGCTGCCACGGCG AA back to topprotein sequence of jgi.p|Nanoce1779_2|571972 >mRNA_1397-protein ID=mRNA_1397-protein|Name=jgi.p|Nanoce1779_2|571972|organism=Nannochloropsis oceanica|type=polypeptide|length=513bp MPFRRAASAWASATASLPALVDPTFLCGTAIVGLVVMYYMVRGRRCARAL RPSPGVIRRKMSFCSAACADGPMPDHAKMNPVDPIINAVVLFEGEAPTRA AVESAILPLFEFERFRSRKVKIHDDWYWEVLPSFDARTHVIEDSFKGASI DDLFLRLEVWSQKPLHVPADGPAFEFALLRNQDKKGPSAVICRINHAIGD GVSLAKLIPHVFKDINGQSLPIGEKFRRREAGFKPTFRFPFTLLFSLFKV LGTPTTAFDTDVGLTIPDKKNITFTGRRCIVRIPTVKLSFIKSIKNAANV TVNDVVMSAVAGAVHRFRCTRKDPMMLDPLSHCKVRVRALMPVALPRQEG DPVKALRNKWSFASVAMPVGVKGSLERLHAANATMTALKNSPIVIVQNMV EANLGARLPWTVAKQTAFDSFVRHTFVFSNVPGPNMPITFAGREVTGLYM AFANLIPQVGALSLNGKIFTCLVLDDAVTPGARELGEHFIDELMDLARRT GLENVKKEDIFG* back to topmRNA from alignment at scaffold_1:458955..462345+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1397 ID=mRNA_1397|Name=jgi.p|Nanoce1779_2|571972|organism=Nannochloropsis oceanica|type=mRNA|length=3391bp|location=Sequence derived from alignment at scaffold_1:458955..462345+ (Nannochloropsis oceanica) CAGCCACACAGACGCCCCAGCTTCAACTCTCAACACACGATTTGCCAGAG
AGGGTCGTGCGCTCTGGACTGTAGAAAGCCTTTTCCATAGTGGTCGCCCT
GCCTGTCACGCTCAAACTTATGCCTTTTCGACGGGCTGCATCAGCCTGGG
CCTCGGCCACAGCATCGTTGCCAGCCTTGGTGGACCCAACTTTCCTTTGC
GGCACTGCCATCGTGGGCCTCGTCGTCATGTACTACATGGTCAGAGGCCG
GAGGTGTGCACGAGCTTTGCGTCCTTCCCCAGGGGTGATTCGGAGGAAAA
TGAGTTTCTGTTCGGCGGCCTGTGCGGATGGTCCTATGCCTGATCACGCC
AAGATGAATCCTGTCGACCCTATTATCAATGCTGTGGTGCTTTTTGAGGG
AGAGGCGCCCACGCGTGCGGCTGTGGAATCGGCTATCTTGCCGCTCTTTG
AATTCGAGCGGTTTCGCTCCCGGAAGGTCAAAATTCATGACGATTGGTAT
TGGGAAGTGCTGCCTTCCTTTGACGCCAGAACGCATGTGATAGAAGACTC
TTTCAAGGGTGCCAGCATCGATGACTTGTTCCTTCGCCTGGAGGTGTGGT
CTCAGAAACCCCTGCATGTGCCGGCGGATGGGCCCGCATTTGAATTTGCT
TTGCTCCGAAACCAGGATAAGAAGGGGCCCTCGGCAGTGATTTGTCGAAT
CAACCATGCGATTGGTGATGGTGTCTCTCTGGCCAAGCTGATTCCCCACG
TCTTCAAGGACATTAATGGGCAGTCCCTACCGATCGGGGAGAAGTTTCGC
CGGCGGGAAGCGGGGTTTAAGCCAACTTTTCGATTTCCGTTCACCTTGCT
ATTTTCGCTTTTCAAAGTATTGGGTACGCCCACTACGGCGTTTGATACTG
ACGTGGGGTTGACGATTCCGGATAAAAAGAATATTACCTTTACAGGGCGT
CGGTGCATTGTGCGTATTCCCACAGTAAAGCTTTCATTCATCAAGAGCAT
TAAAAATGCGGCGAATGTGACTGTGAACGATGTAGTGATGAGCGCGGTAG
CCGGGGCCGTGCATCGATTTCGTTGCACGCGAAAAGACCCTATGATGCTC
GATCCTTTGTCTCATTGCAAAGTCCGCGTTCGCGCTTTGATGCCTGTGGC
TTTGCCGCGGCAGGAGGGAGATCCGGTCAAGGCTTTGCGAAACAAGTGGA
GTTTCGCTTCCGTGGCGATGCCCGTGGGGGTAAAGGGGAGTTTGGAACGC
TTGCATGCAGCGAATGCCACGATGACTGCATTGAAGAACAGTCCGATAGT
GATTGTGCAGAATATGGTCGAGGCTAATCTAGGGGCGCGCTTGCCGTGGA
CAGTAGCGAAACAAACTGCATTTGACTCGTTTGTGAGGCACACGTTTGTA
TTTAGCAATGTTCCGGGTCCGAACATGCCTATTACGTTTGCCGGTCGGGA
AGTGACGGGCCTGTACATGGCATTTGCGAATTTGATTCCTCAGGTATTTG
ATTGTGTTACTTTTTCCTTCCGTCTCTTTTCCCTCTTCCAAGCCGGACTT
CTTCCAAAGATACGTCGATATCTGTATCTCATCTGTTCTCCCTTCTCTCT
CCCTCGCTCCCTCTTTGTCTCACAGGTGGGCGCTCTGTCCTTGAATGGGA
AGATCTTTACCTGCCTGGTTCTGGACGACGCGGTCACGCCTGGAGCCCGT
GAACTCGGAGAGCATTTCATTGACGAGTTGATGGACTTGGCTCGCAGGAC
GGGTTTGGAGAATGTGAAGAAGGAGGATATTTTTGGTTGAGAGCCTCAGG
GGAGAGAGGGAGGGAGGGGGTAGGGGAATGATGGAGATGGTTTTTGTACA
TGCGCGTATGTCGGTGGCTGCCGCGGCTGTCATTGGCGAGGCGATTCGTC
GAACAAATAGAATAAATTTATAAGAGAATGAAGGTGAAGAAAGAACAACA
ACCACTGCCGGGAATGGTGTCTCCTACGTTTTGGGTTGCTGCTACGTTAT
TATTACTGTCGTGCCCGTTCTGTCTGACTGCTGCTGCTGCTGCTGCTTAT
GCTGCTGCTGCTGATGGTGGTGATGCTGGTGTTTCTTTAACTGGCATTAC
CTGTCCTTTCTTTCTCACATTTTCCCTTGCGGACTGATTGGGTCTTCACT
TGTTTTTTCGACAATCGAAGAAGACGTTTTTGACCACCCTACAGGTCCCA
TGTGCTCTATTTTATTCTACCCTGTCACTTTCCGTGTCATTCGTCATGGT
GTCGTTTCCGTGCCACCGACGTACATTGATTATTTCTCCTCGTCTACCTT
CTTCTCCTTCTCTCTGCTGTCCTTGCCATCCGCCGAATCCGCTGTGGCGG
TCTCTCCTTCCTTAAGCCTGAGATTCTTCAGCAGTAGCTGGCCCGTGCCC
CCCCCTTGCAGATAGGCCAAGCCAGAGCCGATCGTCGTGCCGCCCGTAAG
CCAGCTGTAAGGTATGGTGATAGAGTGGAGGACGAGGAAAATAGATGCAT
ATGCGCATGTCTGTGAGACCGAAGGCGAGAAATCATTGCAACAGAGGCCA
TTCCAATCCCATCCGCTGGCCCCCTCTCCTCCCCTTCTTCCCCCTCCCTC
TCTAAACCTACCAAAGCGGCTCAAACAAATCATCCAAGCCCACAGGAATG
CCTTCTCCCCACAGAGCCCGGGACAGTGCAAATGTCAGCACACCGAACTG
CAGGGCTGTATTGATTTTACTCAACAAATTAGGCGTAATCTGGAAAGTAG
CCGACGAAGTCGTGTCAAAAAACGGCGCTCCCGTCGGCCGGTTCCGCACA
CGCATAATAAATGAGCCACCAATCAATAGGGCATCTCTGCCCACCACTGT
AATCACCAAGGGTGTGGGCAAGAACCCTTGCATGGCGAGTGGCACGGCCA
AGGCGGTCACTAAGACCTTGTCTGCAAAGGGGTCGAGGAAACTCCCTAAT
ACCGACGACTGGTTGTAATTTTTTGCAATATGTCCGTCCAACCAATCCGA
ACCCGCGGCCACAGCTAGCCCGGCTACGGCGTAAGCATATTTTCCTTGCA
AAATAAGAATTGCGAGCAAGGGGGAAGAAGCGATGCGTGACAAGGTTATT
ATGTTGGGCACTGTCCAATAGGTCTCTCTGGAGGATGGGGCGCGCGTGGG
AGTTGGAATAGCGGTGCGGCTGGTGCTACTTGTGCCCAACGTATCCTCAT
TATTTTCTTTTGTGAGAACAGTTGGCTTGACTGGTGTTGGGGGCGCATGT
AAGTGGCGAAGGAGGCGAGCATATATATGCTGGTGGTGATGGTATCCTCC
CTCCTGCTGCTGCTGATGCTGATGCTGCTGTCGGACAAGAGCCAGGACAT
ATTTCCCTTCCAGCCGTGCCCGCCGTCGCTGCCACGGCGAA back to topCoding sequence (CDS) from alignment at scaffold_1:458955..462345+ >mRNA_1397 ID=mRNA_1397|Name=jgi.p|Nanoce1779_2|571972|organism=Nannochloropsis oceanica|type=CDS|length=3078bp|location=Sequence derived from alignment at scaffold_1:458955..462345+ (Nannochloropsis oceanica) ATGCCTTTTCGACGGGCTGCATCAGCCTGGGCCTCGGCCACAGCATCGTT GCCAGCCTTGGTGGACCCAACTTTCCTTTGCGGCACTGCCATCGTGGGCC TCGTCGTCATGTACTACATGGTCAGAGGCCGGAGGTGTGCACGAGCTTTG CGTCCTTCCCCAGGGGTGATTCGGAGGAAAATGAGTTTCTGTTCGGCGGC CTGTGCGGATGGTCCTATGCCTGATCACGCCAAGATGAATCCTGTCGACC CTATTATCAATGCTGTGGTGCTTTTTGAGGGAGAGGCGCCCACGCGTGCG GCTGTGGAATCGGCTATCTTGCCGCTCTTTGAATTCGAGCGGTTTCGCTC CCGGAAGGTCAAAATTCATGACGATTGGTATTGGGAAGTGCTGCCTTCCT TTGACGCCAGAACGCATGTGATAGAAGACTCTTTCAAGGGTGCCAGCATC GATGACTTGTTCCTTCGCCTGGAGGTGTGGTCTCAGAAACCCCTGCATGT GCCGGCGGATGGGCCCGCATTTGAATTTGCTTTGCTCCGAAACCAGGATA AGAAGGGGCCCTCGGCAGTGATTTGTCGAATCAACCATGCGATTGGTGAT GGTGTCTCTCTGGCCAAGCTGATTCCCCACGTCTTCAAGGACATTAATGG GCAGTCCCTACCGATCGGGGAGAAGTTTCGCCGGCGGGAAGCGGGGTTTA AGCCAACTTTTCGATTTCCGTTCACCTTGCTATTTTCGCTTTTCAAAGTA TTGGGTACGCCCACTACGGCGTTTGATACTGACGTGGGGTTGACGATTCC GGATAAAAAGAATATTACCTTTACAGGGCGTCGGTGCATTGTGCGTATTC CCACAGTAAAGCTTTCATTCATCAAGAGCATTAAAAATGCGGCGAATGTG ACTGTGAACGATGTAGTGATGAGCGCGGTAGCCGGGGCCGTGCATCGATT TCGTTGCACGCGAAAAGACCCTATGATGCTCGATCCTTTGTCTCATTGCA AAGTCCGCGTTCGCGCTTTGATGCCTGTGGCTTTGCCGCGGCAGGAGGGA GATCCGGTCAAGGCTTTGCGAAACAAGTGGAGTTTCGCTTCCGTGGCGAT GCCCGTGGGGGTAAAGGGGAGTTTGGAACGCTTGCATGCAGCGAATGCCA CGATGACTGCATTGAAGAACAGTCCGATAGTGATTGTGCAGAATATGGTC GAGGCTAATCTAGGGGCGCGCTTGCCGTGGACAGTAGCGAAACAAACTGC ATTTGACTCGTTTGTGAGGCACACGTTTGTATTTAGCAATGTTCCGGGTC CGAACATGCCTATTACGTTTGCCGGTCGGGAAGTGACGGGCCTGTACATG GCATTTGCGAATTTGATTCCTCAGGTGGGCGCTCTGTCCTTGAATGGGAA GATCTTTACCTGCCTGGTTCTGGACGACGCGGTCACGCCTGGAGCCCGTG AACTCGGAGAGCATTTCATTGACGAGTTGATGGACTTGGCTCGCAGGACG GGTTTGGAGAATGTGAAGAAGGAGGATATTTTTGGTTGAATGCCTTTTCG ACGGGCTGCATCAGCCTGGGCCTCGGCCACAGCATCGTTGCCAGCCTTGG TGGACCCAACTTTCCTTTGCGGCACTGCCATCGTGGGCCTCGTCGTCATG TACTACATGGTCAGAGGCCGGAGGTGTGCACGAGCTTTGCGTCCTTCCCC AGGGGTGATTCGGAGGAAAATGAGTTTCTGTTCGGCGGCCTGTGCGGATG GTCCTATGCCTGATCACGCCAAGATGAATCCTGTCGACCCTATTATCAAT GCTGTGGTGCTTTTTGAGGGAGAGGCGCCCACGCGTGCGGCTGTGGAATC GGCTATCTTGCCGCTCTTTGAATTCGAGCGGTTTCGCTCCCGGAAGGTCA AAATTCATGACGATTGGTATTGGGAAGTGCTGCCTTCCTTTGACGCCAGA ACGCATGTGATAGAAGACTCTTTCAAGGGTGCCAGCATCGATGACTTGTT CCTTCGCCTGGAGGTGTGGTCTCAGAAACCCCTGCATGTGCCGGCGGATG GGCCCGCATTTGAATTTGCTTTGCTCCGAAACCAGGATAAGAAGGGGCCC TCGGCAGTGATTTGTCGAATCAACCATGCGATTGGTGATGGTGTCTCTCT GGCCAAGCTGATTCCCCACGTCTTCAAGGACATTAATGGGCAGTCCCTAC CGATCGGGGAGAAGTTTCGCCGGCGGGAAGCGGGGTTTAAGCCAACTTTT CGATTTCCGTTCACCTTGCTATTTTCGCTTTTCAAAGTATTGGGTACGCC CACTACGGCGTTTGATACTGACGTGGGGTTGACGATTCCGGATAAAAAGA ATATTACCTTTACAGGGCGTCGGTGCATTGTGCGTATTCCCACAGTAAAG CTTTCATTCATCAAGAGCATTAAAAATGCGGCGAATGTGACTGTGAACGA TGTAGTGATGAGCGCGGTAGCCGGGGCCGTGCATCGATTTCGTTGCACGC GAAAAGACCCTATGATGCTCGATCCTTTGTCTCATTGCAAAGTCCGCGTT CGCGCTTTGATGCCTGTGGCTTTGCCGCGGCAGGAGGGAGATCCGGTCAA GGCTTTGCGAAACAAGTGGAGTTTCGCTTCCGTGGCGATGCCCGTGGGGG TAAAGGGGAGTTTGGAACGCTTGCATGCAGCGAATGCCACGATGACTGCA TTGAAGAACAGTCCGATAGTGATTGTGCAGAATATGGTCGAGGCTAATCT AGGGGCGCGCTTGCCGTGGACAGTAGCGAAACAAACTGCATTTGACTCGT TTGTGAGGCACACGTTTGTATTTAGCAATGTTCCGGGTCCGAACATGCCT ATTACGTTTGCCGGTCGGGAAGTGACGGGCCTGTACATGGCATTTGCGAA TTTGATTCCTCAGGTGGGCGCTCTGTCCTTGAATGGGAAGATCTTTACCT GCCTGGTTCTGGACGACGCGGTCACGCCTGGAGCCCGTGAACTCGGAGAG CATTTCATTGACGAGTTGATGGACTTGGCTCGCAGGACGGGTTTGGAGAA TGTGAAGAAGGAGGATATTTTTGGTTGA back to top
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