jgi.p|Nanoce1779_2|571969, mRNA_1396 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571969
Unique NamemRNA_1396
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1072
Alignment locationscaffold_1:457647..459031 +

Link to JBrowse

Properties
Property NameValue
TranscriptId572055
TrackFilteredModels2
ProteinId571969
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:457647..459031 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571969gene_1396Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571969mRNA_1396-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1396CDS_1396Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1396 ID=mRNA_1396|Name=jgi.p|Nanoce1779_2|571969|organism=Nannochloropsis oceanica|type=mRNA|length=1072bp
ATCCGATGCTGCTCCTACTCTTGCAAAGGCAACAACCGCTTCTCCGGCCA
AGAAAGCCGCGGCCGTGAAGACCATCATGGTTGAGGCCTGCAAACAGTGC
CAATGCTTTAAGAAGCGCTTCGAGATCCTCGAGAAAGCCACCAAGGCCCT
CAAGCCCGGCTTGACCTTCGTTTTGAATGCGGAGAAGCCCACAAAGGGCG
TATTTATCGTCCGCACGGACAAGGGGGAGGTGCTTTGGTCTATGACTGGA
CTCACGAGGCCATTCCAACCTTTGAAGGCGGTAGATTTCGAGCTTGTTGC
CAAAGAGCTAGTGGACAAGCTTTAATTGCCCAGGCCAGTGCATTGCGCGC
AGGCAGAGGTGCGAGCGTGAATCAGTGGAGTAAAGTAATTGAATATTTTA
ATTTTTATGCGTAGGATAAGCAGTTCATGCTCGCTTTGCAGTGTTTCTAT
AAATTCCAAGCTTTTGATGGTGCTTGGGGAAATGCTTCATGCGGGAGCCT
GTTATTGGGTTTATGTTCAAGATATGAAAGATGAGTGGGAAGGCGAAGCA
CGAAACAAAGCAAACCACTTTTTGTATGTTCGAAGAGCATGCCAAGATCC
CATCTTTTGAAGTGTGATTGTATGGGAGGAGTGGTGACAGATCTCATGAT
ATCACATGACCCACATTGCTGCAATTCTAGAGCATTCGTTTGACCCTCTG
GGAGATTCCCCTCAGAGGCACAGTCTCGGCCTTGTCCAAAATATCTATCC
GCGAGTTGTATGCCCACCGCTGGGTAGTAAGTAGTAGACAGTCCGAAGAA
CAAGAAAAACAAGGCCCCACTACAAACTTCCCCAGTCCCAAAGCAATGAA
ACGTTTGAGTCTTGCGTTGCGCGTATCCACGACAAAGATCGAGTACTCCT
CTAGAGTGCTTATCGTTACATGCTCCAGTTGATCGATTATCTGCTTCCCT
GAAGCTGACGCCCAACCGCACTTCTTCTCTACAAATCCCCGTACTCAGCC
ACACAGACGCCCCAGCTTCAACTCTCAACACACGATTTGCCAGAGAGGGT
CGTGCGCTCTGGACTGTAGAAA
back to top

protein sequence of jgi.p|Nanoce1779_2|571969

>mRNA_1396-protein ID=mRNA_1396-protein|Name=jgi.p|Nanoce1779_2|571969|organism=Nannochloropsis oceanica|type=polypeptide|length=83bp
MVEACKQCQCFKKRFEILEKATKALKPGLTFVLNAEKPTKGVFIVRTDKG
EVLWSMTGLTRPFQPLKAVDFELVAKELVDKL*
back to top

mRNA from alignment at scaffold_1:457647..459031+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1396 ID=mRNA_1396|Name=jgi.p|Nanoce1779_2|571969|organism=Nannochloropsis oceanica|type=mRNA|length=1385bp|location=Sequence derived from alignment at scaffold_1:457647..459031+ (Nannochloropsis oceanica)
ATCCGATGCTGCTCCTACTCTTGCAAAGGCAACAACCGCTTCTCCGGCCA
AGAAAGCCGCGGCCGTGAAGACCATCATGGTTGAGGCCTGCAAACAGTGC
CAATGTAAGAGCTCTTGGTAGACATTCAATTTCAGGATGTCGGGATATTC
AAGTGTATGATGCCTTTTCCAGCACACCATTACCCCATTCACTCCTGCAC
CCTCTCGTCCACTCCTTTGGCAGGCTTTAAGAAGCGCTTCGAGATCCTCG
AGAAAGCCACCAAGGCCCTCAAGCCCGGCTTGACCTTCGTTTTGAATGCG
GAGAAGCCCACAAAGGGCGTATTTATCGTCCGCACGGACAAGGGGGAGGT
GCTTTGGTCTATGACTGGACTCACGAGGCCATTCCAACCTTTGAAGGTAT
GTGAATGGAGATGGAGAGAAAAAAGAAAGCCAGAGAGGAAAACGGACTAA
AAAGGGGATATACTTTTTGCGAAATATTCACCACACATGGGAAATAATCA
CGGTGCGTTTGTAATTGGTACATAAGTGTATCCCATTTCCTCTGATATAA
AAAGTATTTCCACCCTCTCACCCATCATGACTGTACCCAGGCGGTAGATT
TCGAGCTTGTTGCCAAAGAGCTAGTGGACAAGCTTTAATTGCCCAGGCCA
GTGCATTGCGCGCAGGCAGAGGTGCGAGCGTGAATCAGTGGAGTAAAGTA
ATTGAATATTTTAATTTTTATGCGTAGGATAAGCAGTTCATGCTCGCTTT
GCAGTGTTTCTATAAATTCCAAGCTTTTGATGGTGCTTGGGGAAATGCTT
CATGCGGGAGCCTGTTATTGGGTTTATGTTCAAGATATGAAAGATGAGTG
GGAAGGCGAAGCACGAAACAAAGCAAACCACTTTTTGTATGTTCGAAGAG
CATGCCAAGATCCCATCTTTTGAAGTGTGATTGTATGGGAGGAGTGGTGA
CAGATCTCATGATATCACATGACCCACATTGCTGCAATTCTAGAGCATTC
GTTTGACCCTCTGGGAGATTCCCCTCAGAGGCACAGTCTCGGCCTTGTCC
AAAATATCTATCCGCGAGTTGTATGCCCACCGCTGGGTAGTAAGTAGTAG
ACAGTCCGAAGAACAAGAAAAACAAGGCCCCACTACAAACTTCCCCAGTC
CCAAAGCAATGAAACGTTTGAGTCTTGCGTTGCGCGTATCCACGACAAAG
ATCGAGTACTCCTCTAGAGTGCTTATCGTTACATGCTCCAGTTGATCGAT
TATCTGCTTCCCTGAAGCTGACGCCCAACCGCACTTCTTCTCTACAAATC
CCCGTACTCAGCCACACAGACGCCCCAGCTTCAACTCTCAACACACGATT
TGCCAGAGAGGGTCGTGCGCTCTGGACTGTAGAAA
back to top

Coding sequence (CDS) from alignment at scaffold_1:457647..459031+

>mRNA_1396 ID=mRNA_1396|Name=jgi.p|Nanoce1779_2|571969|organism=Nannochloropsis oceanica|type=CDS|length=747bp|location=Sequence derived from alignment at scaffold_1:457647..459031+ (Nannochloropsis oceanica)
ATGGTTGAGGCCTGCAAACAGTGCCAATGCTTTAAGAAGCGCTTCGAGAT
CCTCGAGAAAGCCACCAAGGCCCTCAAGCCCGGCTTGACCTTCGTTTTGA
ATGCGGAGAAGCCCACAAAGGGCGTATTTATCGTCCGCACGGACAAGGGG
GAGGTGCTTTGGTCTATGACTGGACTCACGAGGCCATTCCAACCTTTGAA
GGCGGTAGATTTCGAGCTTGTTGCCAAAGAGCTAGTGGACAAGCTTTAAA
TGGTTGAGGCCTGCAAACAGTGCCAATGCTTTAAGAAGCGCTTCGAGATC
CTCGAGAAAGCCACCAAGGCCCTCAAGCCCGGCTTGACCTTCGTTTTGAA
TGCGGAGAAGCCCACAAAGGGCGTATTTATCGTCCGCACGGACAAGGGGG
AGGTGCTTTGGTCTATGACTGGACTCACGAGGCCATTCCAACCTTTGAAG
GCGGTAGATTTCGAGCTTGTTGCCAAAGAGCTAGTGGACAAGCTTTAAAT
GGTTGAGGCCTGCAAACAGTGCCAATGCTTTAAGAAGCGCTTCGAGATCC
TCGAGAAAGCCACCAAGGCCCTCAAGCCCGGCTTGACCTTCGTTTTGAAT
GCGGAGAAGCCCACAAAGGGCGTATTTATCGTCCGCACGGACAAGGGGGA
GGTGCTTTGGTCTATGACTGGACTCACGAGGCCATTCCAACCTTTGAAGG
CGGTAGATTTCGAGCTTGTTGCCAAAGAGCTAGTGGACAAGCTTTAA
back to top
Synonyms
Publications