jgi.p|Nanoce1779_2|522201, mRNA_1394 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|522201
Unique NamemRNA_1394
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length702
Alignment locationscaffold_1:453193..453894 -

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Properties
Property NameValue
TranscriptId522287
TrackFilteredModels2
ProteinId522201
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:453193..453894 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|522201gene_1394Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1394CDS_1394Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|522201mRNA_1394-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1394 ID=mRNA_1394|Name=jgi.p|Nanoce1779_2|522201|organism=Nannochloropsis oceanica|type=mRNA|length=702bp
ATGGCGCTGCCACCACCGCTAGCAGTCCTACCTGCTGCTGTTACTGCCAC
AACTACTGCTGCTGCTGCCGCTGCTGCTTCTTCCACAGCCGCCGCTTCTG
GGAGCATTGTCTTTCTGTGTGCTGCGTGTCGGCGAATCGTGGGGGACTCT
TTGGGCTTGACCAGCGCGGACGAGGACTTGCGGCACATAACGCTGCACGG
TGCCTGCGGCATCGTTCGGGGGCCCTGTCCGCGCACCTCGGAGGAAGGGA
AAGATTTGGGATCGACGTTTCACGAGCTGTTTTGCGAGGGCTGCAATGCA
TTGTTGGGCAAAGTGTATTTGACAACCCCTGCGCCCTTAGACGGAGCCCG
CAATCTCTTTACGTTATCCACAGACGCCCTCGAGAGCTTCGAGCTAGGAA
ATTATGATCACACGTGCGAGCTTCCCGCGCACCTGATGCCGACCCCTCCA
GCAGCGTCGAGGGAGGGAGCAGAGATTGCAGCGGGAGGAGGGGGGGAGGG
AGGGCCTCCCCACGCGGCTATGCAGTTGGAGCTGACAAAAGTACAGAACA
TGATGTTGGTATTTCACGACCGTATCTCGAGCTTGGAACGGGCATTGAAG
GAGGCAACAATCGGAGCAGGGGCTACAGATTGGGAAAGGAAAGGAGGTGG
CGACCGAGAGAATGTGGGGGCAGTGGGAAATAAATTCAAAAGGAAGAAGT
AG
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protein sequence of jgi.p|Nanoce1779_2|522201

>mRNA_1394-protein ID=mRNA_1394-protein|Name=jgi.p|Nanoce1779_2|522201|organism=Nannochloropsis oceanica|type=polypeptide|length=234bp
MALPPPLAVLPAAVTATTTAAAAAAASSTAAASGSIVFLCAACRRIVGDS
LGLTSADEDLRHITLHGACGIVRGPCPRTSEEGKDLGSTFHELFCEGCNA
LLGKVYLTTPAPLDGARNLFTLSTDALESFELGNYDHTCELPAHLMPTPP
AASREGAEIAAGGGGEGGPPHAAMQLELTKVQNMMLVFHDRISSLERALK
EATIGAGATDWERKGGGDRENVGAVGNKFKRKK*
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mRNA from alignment at scaffold_1:453193..453894-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1394 ID=mRNA_1394|Name=jgi.p|Nanoce1779_2|522201|organism=Nannochloropsis oceanica|type=mRNA|length=702bp|location=Sequence derived from alignment at scaffold_1:453193..453894- (Nannochloropsis oceanica)
ATGGCGCTGCCACCACCGCTAGCAGTCCTACCTGCTGCTGTTACTGCCAC
AACTACTGCTGCTGCTGCCGCTGCTGCTTCTTCCACAGCCGCCGCTTCTG
GGAGCATTGTCTTTCTGTGTGCTGCGTGTCGGCGAATCGTGGGGGACTCT
TTGGGCTTGACCAGCGCGGACGAGGACTTGCGGCACATAACGCTGCACGG
TGCCTGCGGCATCGTTCGGGGGCCCTGTCCGCGCACCTCGGAGGAAGGGA
AAGATTTGGGATCGACGTTTCACGAGCTGTTTTGCGAGGGCTGCAATGCA
TTGTTGGGCAAAGTGTATTTGACAACCCCTGCGCCCTTAGACGGAGCCCG
CAATCTCTTTACGTTATCCACAGACGCCCTCGAGAGCTTCGAGCTAGGAA
ATTATGATCACACGTGCGAGCTTCCCGCGCACCTGATGCCGACCCCTCCA
GCAGCGTCGAGGGAGGGAGCAGAGATTGCAGCGGGAGGAGGGGGGGAGGG
AGGGCCTCCCCACGCGGCTATGCAGTTGGAGCTGACAAAAGTACAGAACA
TGATGTTGGTATTTCACGACCGTATCTCGAGCTTGGAACGGGCATTGAAG
GAGGCAACAATCGGAGCAGGGGCTACAGATTGGGAAAGGAAAGGAGGTGG
CGACCGAGAGAATGTGGGGGCAGTGGGAAATAAATTCAAAAGGAAGAAGT
AG
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Coding sequence (CDS) from alignment at scaffold_1:453193..453894-

>mRNA_1394 ID=mRNA_1394|Name=jgi.p|Nanoce1779_2|522201|organism=Nannochloropsis oceanica|type=CDS|length=702bp|location=Sequence derived from alignment at scaffold_1:453193..453894- (Nannochloropsis oceanica)
ATGGCGCTGCCACCACCGCTAGCAGTCCTACCTGCTGCTGTTACTGCCAC
AACTACTGCTGCTGCTGCCGCTGCTGCTTCTTCCACAGCCGCCGCTTCTG
GGAGCATTGTCTTTCTGTGTGCTGCGTGTCGGCGAATCGTGGGGGACTCT
TTGGGCTTGACCAGCGCGGACGAGGACTTGCGGCACATAACGCTGCACGG
TGCCTGCGGCATCGTTCGGGGGCCCTGTCCGCGCACCTCGGAGGAAGGGA
AAGATTTGGGATCGACGTTTCACGAGCTGTTTTGCGAGGGCTGCAATGCA
TTGTTGGGCAAAGTGTATTTGACAACCCCTGCGCCCTTAGACGGAGCCCG
CAATCTCTTTACGTTATCCACAGACGCCCTCGAGAGCTTCGAGCTAGGAA
ATTATGATCACACGTGCGAGCTTCCCGCGCACCTGATGCCGACCCCTCCA
GCAGCGTCGAGGGAGGGAGCAGAGATTGCAGCGGGAGGAGGGGGGGAGGG
AGGGCCTCCCCACGCGGCTATGCAGTTGGAGCTGACAAAAGTACAGAACA
TGATGTTGGTATTTCACGACCGTATCTCGAGCTTGGAACGGGCATTGAAG
GAGGCAACAATCGGAGCAGGGGCTACAGATTGGGAAAGGAAAGGAGGTGG
CGACCGAGAGAATGTGGGGGCAGTGGGAAATAAATTCAAAAGGAAGAAGT
AG
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Synonyms
Publications