jgi.p|Nanoce1779_2|571955, mRNA_1393 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|571955
Unique Name	mRNA_1393
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2469
Alignment location	scaffold_1:450465..453087 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	572041
Track	FilteredModels2
ProteinId	571955

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:450465..453087 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|571955	gene_1393	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|571955	mRNA_1393-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1393	CDS_1393	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:450465..453087+
coding sequence from alignment at scaffold_1:450465..453087+

mRNA sequence

>mRNA_1393 ID=mRNA_1393|Name=jgi.p|Nanoce1779_2|571955|organism=Nannochloropsis oceanica|type=mRNA|length=2469bp
AGGCACAGTTTGATCATTGTCGGCCATCCTCAGCGGAACCATGGGCAGCG
GCAGGGCGGTCGGTCTGCTTATGTCGGCCGGGATAATGCTAGCGGAAGGG
GGCAGCAGAAGTACCAATCTTCCACCTCTACCGGCCGCCTCGTACCCACC
TCCTTCTGCTTCCTGGGCCGCCTCCAGCATGGATCCCACATCCCTGCCAC
GCCTCTTGACACGGCGGGGTGGCATAAAGATACGGGCAGAGCCTGTGATC
GAGGGGGAGTCCTCGAGATCACGGATACCAAGCGGCAGCAACGAGCGGGA
CAAGAAAGGAGGGGGCAAGAACAGCAAAAGAGACACACCCGACAGACGCG
GAGAGGAGGAAGACGATCTCGTCGGAACCGCACGCTTGAGCTATGGGAGC
GATGGCCAAAAAGGTTTGCGGATGGACGTTGATCTGGATGTGAGTGAGTT
GACCAGTCACCTAGGACCTGCAGCAAAGCCCTTGGTAGCGGTGGCTAAGG
CGATACAGCAAACAATTTTTTACACCGCGCCTATGTTAGCTCTCGCCGGG
TTGATCACTCAAATTGCGGGAATTTCCTGCTCGCGATACACTAAGACGCA
GGCGGACAAAAAGGACGGAGAGAAGAAGGGCAGCATCAATTACAAAGGGA
ACCGCAGTACCACTGCTGACTGGAAGCAGCAACAAAAGCAGCAAGACGCC
AAGGCCGCGGTTGTCGCGAAGACAAATAAGAAAGGTGCCTCCCCTCTCTC
CTCACTATGGGCATTCCTCAAGTGGCCGTTCCCCTATTCGCTCTTCCTCT
CCTCTTCCTCCTCCTCAACCTTGTCCTCCTCCAGAAGCAAAGACAAGGAC
AACAGTAAACAAGCAGCTCACGTCTGCAATGTCAAAGGCGGTGCTGTTTC
AATGCGAGAAACCCTCGATTGGAATGCCTTTGGTATTCTCACCACCCGGG
CCGCCGGTCAATGGTCCAGTCTCGTCATTGCAGGCATCGTTCTCGGCAAG
CTCCTCAACCACGCCGCCGCCTCGACGAAATTCGATCCCACCCTCCTCCT
ATCCCTCGATATCTTTACAGCATTCGCCGCCATTTTTCTGAGTGAAAATG
TGGGGTTCTTGCGGACCAAGATGGATATGAGTTGGTACCAGCGGGTGTTA
CGGAAACCGACTTGGACCCCCAAACCTATCGTCTTCCCCCTGGTCTGGAT
ACCGCTGAAACTGCTGCAAACGGCAGCGTTAACGGTAGTCTGGCGGTTAG
TAGAGAGAAACGCCTTGGCGGTGCCAGTACTACTTTTTCTTCTGCACTTG
ACCCTGGGAGATCTTTGGAACGTGGTTTTCTTTGGAGAGAAGAGGATAGG
ATACGGTCTGAGTGTAATGTATGCATTTTACGCCTCCTTGGCCGCGTCGT
GTTATTCATTTTATAGCGTCAGGCCACGGGCGGCTTATTTGCTTGTGCCG
ACGGCGGTGTGGGTCTTTGTTGCGACAAGTTTGAATTATTCGATCTGGTT
GATGAATGGGCAGCCAACGCGGTTTCCGACAAAGATGCAGCAGTAGCTGT
CGTCTGAGCAGCAACAGCAGCATAAGCAGCTGCCGCTTCAGCAGCGGTAG
GACGAGGAAAGGAGATCACGTTTGAAGAGGAGATGAGGAGAGACCTCTAT
ATCTAGATAGAGAAGGGGTATTTTGGGGGAAGGCATATGTCGTGGAGAAA
ACGACACAGAGGAACAGCGAGGAACAGTGAGGATGTGTGAGTATGAGTGA
GCGGGTGTGGCAGCCGCACCAACAGTGGCACCAATGCCTGCTGCAGTATC
ATCGCCGCCAGCAGCCGCATCGTCACGACACACACACTCGTCGGCCATTT
TGCAGTCAAACAGAAACGAAAGCAAGCACACCAAATTGTTCATTACATAA
AGCTCTGACCGCCCCGATTCCCAAAATAACATGAGACGGAAAGGGAGATC
GGCGAAAGAAAGAGTGAAGTCAAAAGGCAGAAGATCAAGATCAAGAAGCA
ACGGCAAGCCCAAATCAGCAGCAGCAGCGGGCAGCAGCAGCAGCAGACGT
AATATAATCGCGGCTTGACTTGCAAACAAATATGACGACTACGATACACC
ACCCCCACCTTCTTTTCTCACTCTCTACAAACATTGGACACATTGATTCG
CTCTTGAGAGACGTTATGCATAGACTAGCAGCTAGATGACGGTATTATTA
CGAATTCGTGTGCGTGCATATGTAATGATGTGCTTTTTAATGGCATTGGG
GCATTGGAGAGGGAAGAGAGAATGGTGAGACGAAGGGTCTAGATACAGAG
AGGAAACAAGACGTGAATGACAGACGGAGCGAGACACAGAGAGAACGATT
TGCAATGCAACGGTAGGAAAAGATCGAGTGACAGCGACAGGTAGGGGAAA
TGCACTCACGCAAGGAAGCAATTAAAAAAGAAGGAACGAAAAAAATGAAA
TTTCCCCTCTTATCTCACG

protein sequence of jgi.p|Nanoce1779_2|571955

>mRNA_1393-protein ID=mRNA_1393-protein|Name=jgi.p|Nanoce1779_2|571955|organism=Nannochloropsis oceanica|type=polypeptide|length=502bp
MGSGRAVGLLMSAGIMLAEGGSRSTNLPPLPAASYPPPSASWAASSMDPT
SLPRLLTRRGGIKIRAEPVIEGESSRSRIPSGSNERDKKGGGKNSKRDTP
DRRGEEEDDLVGTARLSYGSDGQKGLRMDVDLDVSELTSHLGPAAKPLVA
VAKAIQQTIFYTAPMLALAGLITQIAGISCSRYTKTQADKKDGEKKGSIN
YKGNRSTTADWKQQQKQQDAKAAVVAKTNKKGASPLSSLWAFLKWPFPYS
LFLSSSSSSTLSSSRSKDKDNSKQAAHVCNVKGGAVSMRETLDWNAFGIL
TTRAAGQWSSLVIAGIVLGKLLNHAAASTKFDPTLLLSLDIFTAFAAIFL
SENVGFLRTKMDMSWYQRVLRKPTWTPKPIVFPLVWIPLKLLQTAALTVV
WRLVERNALAVPVLLFLLHLTLGDLWNVVFFGEKRIGYGLSVMYAFYASL
AASCYSFYSVRPRAAYLLVPTAVWVFVATSLNYSIWLMNGQPTRFPTKMQ
Q*

mRNA from alignment at scaffold_1:450465..453087+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1393 ID=mRNA_1393|Name=jgi.p|Nanoce1779_2|571955|organism=Nannochloropsis oceanica|type=mRNA|length=2623bp|location=Sequence derived from alignment at scaffold_1:450465..453087+ (Nannochloropsis oceanica)
AGGCACAGTTTGATCATTGTCGGCCATCCTCAGCGGAACCATGGGCAGCG
GCAGGGCGGTCGGTCTGCTTATGTCGGCCGGGATAATGCTAGCGGAAGGG
GGCAGCAGAAGTACCAATCTTCCACCTCTACCGGCCGCCTCGTACCCACC
TCCTTCTGCTTCCTGGGCCGCCTCCAGCATGGATCCCACATCCCTGCCAC
GCCTCTTGACACGGCGGGGTGGCATAAAGATACGGGCAGAGCCTGTGATC
GAGGGGGAGTCCTCGAGATCACGGGTATGTTTCGGGAAAGGGAGAAGGGA
AGGGAAGGAGAACCCCCTCTGGGGAATTGCCTTATTCGCAACCCACGGCG
CTTTTCGGGAAGCGGGCATAAACGTGGATGGTCAACAATTTGCTCATCAA
ATCGTCTCTAAATTCTACCACAATATAGATACCAAGCGGCAGCAACGAGC
GGGACAAGAAAGGAGGGGGCAAGAACAGCAAAAGAGACACACCCGACAGA
CGCGGAGAGGAGGAAGACGATCTCGTCGGAACCGCACGCTTGAGCTATGG
GAGCGATGGCCAAAAAGGTTTGCGGATGGACGTTGATCTGGATGTGAGTG
AGTTGACCAGTCACCTAGGACCTGCAGCAAAGCCCTTGGTAGCGGTGGCT
AAGGCGATACAGCAAACAATTTTTTACACCGCGCCTATGTTAGCTCTCGC
CGGGTTGATCACTCAAATTGCGGGAATTTCCTGCTCGCGATACACTAAGA
CGCAGGCGGACAAAAAGGACGGAGAGAAGAAGGGCAGCATCAATTACAAA
GGGAACCGCAGTACCACTGCTGACTGGAAGCAGCAACAAAAGCAGCAAGA
CGCCAAGGCCGCGGTTGTCGCGAAGACAAATAAGAAAGGTGCCTCCCCTC
TCTCCTCACTATGGGCATTCCTCAAGTGGCCGTTCCCCTATTCGCTCTTC
CTCTCCTCTTCCTCCTCCTCAACCTTGTCCTCCTCCAGAAGCAAAGACAA
GGACAACAGTAAACAAGCAGCTCACGTCTGCAATGTCAAAGGCGGTGCTG
TTTCAATGCGAGAAACCCTCGATTGGAATGCCTTTGGTATTCTCACCACC
CGGGCCGCCGGTCAATGGTCCAGTCTCGTCATTGCAGGCATCGTTCTCGG
CAAGCTCCTCAACCACGCCGCCGCCTCGACGAAATTCGATCCCACCCTCC
TCCTATCCCTCGATATCTTTACAGCATTCGCCGCCATTTTTCTGAGTGAA
AATGTGGGGTTCTTGCGGACCAAGATGGATATGAGTTGGTACCAGCGGGT
GTTACGGAAACCGACTTGGACCCCCAAACCTATCGTCTTCCCCCTGGTCT
GGATACCGCTGAAACTGCTGCAAACGGCAGCGTTAACGGTAGTCTGGCGG
TTAGTAGAGAGAAACGCCTTGGCGGTGCCAGTACTACTTTTTCTTCTGCA
CTTGACCCTGGGAGATCTTTGGAACGTGGTTTTCTTTGGAGAGAAGAGGA
TAGGATACGGTCTGAGTGTAATGTATGCATTTTACGCCTCCTTGGCCGCG
TCGTGTTATTCATTTTATAGCGTCAGGCCACGGGCGGCTTATTTGCTTGT
GCCGACGGCGGTGTGGGTCTTTGTTGCGACAAGTTTGAATTATTCGATCT
GGTTGATGAATGGGCAGCCAACGCGGTTTCCGACAAAGATGCAGCAGTAG
CTGTCGTCTGAGCAGCAACAGCAGCATAAGCAGCTGCCGCTTCAGCAGCG
GTAGGACGAGGAAAGGAGATCACGTTTGAAGAGGAGATGAGGAGAGACCT
CTATATCTAGATAGAGAAGGGGTATTTTGGGGGAAGGCATATGTCGTGGA
GAAAACGACACAGAGGAACAGCGAGGAACAGTGAGGATGTGTGAGTATGA
GTGAGCGGGTGTGGCAGCCGCACCAACAGTGGCACCAATGCCTGCTGCAG
TATCATCGCCGCCAGCAGCCGCATCGTCACGACACACACACTCGTCGGCC
ATTTTGCAGTCAAACAGAAACGAAAGCAAGCACACCAAATTGTTCATTAC
ATAAAGCTCTGACCGCCCCGATTCCCAAAATAACATGAGACGGAAAGGGA
GATCGGCGAAAGAAAGAGTGAAGTCAAAAGGCAGAAGATCAAGATCAAGA
AGCAACGGCAAGCCCAAATCAGCAGCAGCAGCGGGCAGCAGCAGCAGCAG
ACGTAATATAATCGCGGCTTGACTTGCAAACAAATATGACGACTACGATA
CACCACCCCCACCTTCTTTTCTCACTCTCTACAAACATTGGACACATTGA
TTCGCTCTTGAGAGACGTTATGCATAGACTAGCAGCTAGATGACGGTATT
ATTACGAATTCGTGTGCGTGCATATGTAATGATGTGCTTTTTAATGGCAT
TGGGGCATTGGAGAGGGAAGAGAGAATGGTGAGACGAAGGGTCTAGATAC
AGAGAGGAAACAAGACGTGAATGACAGACGGAGCGAGACACAGAGAGAAC
GATTTGCAATGCAACGGTAGGAAAAGATCGAGTGACAGCGACAGGTAGGG
GAAATGCACTCACGCAAGGAAGCAATTAAAAAAGAAGGAACGAAAAAAAT
GAAATTTCCCCTCTTATCTCACG

Coding sequence (CDS) from alignment at scaffold_1:450465..453087+

>mRNA_1393 ID=mRNA_1393|Name=jgi.p|Nanoce1779_2|571955|organism=Nannochloropsis oceanica|type=CDS|length=3012bp|location=Sequence derived from alignment at scaffold_1:450465..453087+ (Nannochloropsis oceanica)
ATGGGCAGCGGCAGGGCGGTCGGTCTGCTTATGTCGGCCGGGATAATGCT
AGCGGAAGGGGGCAGCAGAAGTACCAATCTTCCACCTCTACCGGCCGCCT
CGTACCCACCTCCTTCTGCTTCCTGGGCCGCCTCCAGCATGGATCCCACA
TCCCTGCCACGCCTCTTGACACGGCGGGGTGGCATAAAGATACGGGCAGA
GCCTGTGATCGAGGGGGAGTCCTCGAGATCACGGATACCAAGCGGCAGCA
ACGAGCGGGACAAGAAAGGAGGGGGCAAGAACAGCAAAAGAGACACACCC
GACAGACGCGGAGAGGAGGAAGACGATCTCGTCGGAACCGCACGCTTGAG
CTATGGGAGCGATGGCCAAAAAGGTTTGCGGATGGACGTTGATCTGGATG
TGAGTGAGTTGACCAGTCACCTAGGACCTGCAGCAAAGCCCTTGGTAGCG
GTGGCTAAGGCGATACAGCAAACAATTTTTTACACCGCGCCTATGTTAGC
TCTCGCCGGGTTGATCACTCAAATTGCGGGAATTTCCTGCTCGCGATACA
CTAAGACGCAGGCGGACAAAAAGGACGGAGAGAAGAAGGGCAGCATCAAT
TACAAAGGGAACCGCAGTACCACTGCTGACTGGAAGCAGCAACAAAAGCA
GCAAGACGCCAAGGCCGCGGTTGTCGCGAAGACAAATAAGAAAGGTGCCT
CCCCTCTCTCCTCACTATGGGCATTCCTCAAGTGGCCGTTCCCCTATTCG
CTCTTCCTCTCCTCTTCCTCCTCCTCAACCTTGTCCTCCTCCAGAAGCAA
AGACAAGGACAACAGTAAACAAGCAGCTCACGTCTGCAATGTCAAAGGCG
GTGCTGTTTCAATGCGAGAAACCCTCGATTGGAATGCCTTTGGTATTCTC
ACCACCCGGGCCGCCGGTCAATGGTCCAGTCTCGTCATTGCAGGCATCGT
TCTCGGCAAGCTCCTCAACCACGCCGCCGCCTCGACGAAATTCGATCCCA
CCCTCCTCCTATCCCTCGATATCTTTACAGCATTCGCCGCCATTTTTCTG
AGTGAAAATGTGGGGTTCTTGCGGACCAAGATGGATATGAGTTGGTACCA
GCGGGTGTTACGGAAACCGACTTGGACCCCCAAACCTATCGTCTTCCCCC
TGGTCTGGATACCGCTGAAACTGCTGCAAACGGCAGCGTTAACGGTAGTC
TGGCGGTTAGTAGAGAGAAACGCCTTGGCGGTGCCAGTACTACTTTTTCT
TCTGCACTTGACCCTGGGAGATCTTTGGAACGTGGTTTTCTTTGGAGAGA
AGAGGATAGGATACGGTCTGAGTGTAATGTATGCATTTTACGCCTCCTTG
GCCGCGTCGTGTTATTCATTTTATAGCGTCAGGCCACGGGCGGCTTATTT
GCTTGTGCCGACGGCGGTGTGGGTCTTTGTTGCGACAAGTTTGAATTATT
CGATCTGGTTGATGAATGGGCAGCCAACGCGGTTTCCGACAAAGATGCAG
CAGTAGATGGGCAGCGGCAGGGCGGTCGGTCTGCTTATGTCGGCCGGGAT
AATGCTAGCGGAAGGGGGCAGCAGAAGTACCAATCTTCCACCTCTACCGG
CCGCCTCGTACCCACCTCCTTCTGCTTCCTGGGCCGCCTCCAGCATGGAT
CCCACATCCCTGCCACGCCTCTTGACACGGCGGGGTGGCATAAAGATACG
GGCAGAGCCTGTGATCGAGGGGGAGTCCTCGAGATCACGGATACCAAGCG
GCAGCAACGAGCGGGACAAGAAAGGAGGGGGCAAGAACAGCAAAAGAGAC
ACACCCGACAGACGCGGAGAGGAGGAAGACGATCTCGTCGGAACCGCACG
CTTGAGCTATGGGAGCGATGGCCAAAAAGGTTTGCGGATGGACGTTGATC
TGGATGTGAGTGAGTTGACCAGTCACCTAGGACCTGCAGCAAAGCCCTTG
GTAGCGGTGGCTAAGGCGATACAGCAAACAATTTTTTACACCGCGCCTAT
GTTAGCTCTCGCCGGGTTGATCACTCAAATTGCGGGAATTTCCTGCTCGC
GATACACTAAGACGCAGGCGGACAAAAAGGACGGAGAGAAGAAGGGCAGC
ATCAATTACAAAGGGAACCGCAGTACCACTGCTGACTGGAAGCAGCAACA
AAAGCAGCAAGACGCCAAGGCCGCGGTTGTCGCGAAGACAAATAAGAAAG
GTGCCTCCCCTCTCTCCTCACTATGGGCATTCCTCAAGTGGCCGTTCCCC
TATTCGCTCTTCCTCTCCTCTTCCTCCTCCTCAACCTTGTCCTCCTCCAG
AAGCAAAGACAAGGACAACAGTAAACAAGCAGCTCACGTCTGCAATGTCA
AAGGCGGTGCTGTTTCAATGCGAGAAACCCTCGATTGGAATGCCTTTGGT
ATTCTCACCACCCGGGCCGCCGGTCAATGGTCCAGTCTCGTCATTGCAGG
CATCGTTCTCGGCAAGCTCCTCAACCACGCCGCCGCCTCGACGAAATTCG
ATCCCACCCTCCTCCTATCCCTCGATATCTTTACAGCATTCGCCGCCATT
TTTCTGAGTGAAAATGTGGGGTTCTTGCGGACCAAGATGGATATGAGTTG
GTACCAGCGGGTGTTACGGAAACCGACTTGGACCCCCAAACCTATCGTCT
TCCCCCTGGTCTGGATACCGCTGAAACTGCTGCAAACGGCAGCGTTAACG
GTAGTCTGGCGGTTAGTAGAGAGAAACGCCTTGGCGGTGCCAGTACTACT
TTTTCTTCTGCACTTGACCCTGGGAGATCTTTGGAACGTGGTTTTCTTTG
GAGAGAAGAGGATAGGATACGGTCTGAGTGTAATGTATGCATTTTACGCC
TCCTTGGCCGCGTCGTGTTATTCATTTTATAGCGTCAGGCCACGGGCGGC
TTATTTGCTTGTGCCGACGGCGGTGTGGGTCTTTGTTGCGACAAGTTTGA
ATTATTCGATCTGGTTGATGAATGGGCAGCCAACGCGGTTTCCGACAAAG
ATGCAGCAGTAG

Synonyms

Publications