jgi.p|Nanoce1779_2|522346, mRNA_1392 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|522346
Unique NamemRNA_1392
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1131
Alignment locationscaffold_1:448857..450053 -

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Properties
Property NameValue
TranscriptId522432
TrackFilteredModels2
ProteinId522346
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:448857..450053 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|522346gene_1392Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|522346mRNA_1392-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1392CDS_1392Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1392 ID=mRNA_1392|Name=jgi.p|Nanoce1779_2|522346|organism=Nannochloropsis oceanica|type=mRNA|length=1131bp
ATGACGTCCTTAGAGCTATGGGCTAATTGTTTAAAACGCGACTCAAAGGG
AAATCATCCTATTCCAACGGGCGCCACACGGTGTTTTGACATCAAAGATG
GCTTATTGAAAGCCTCGTCTACCCCGCAGATTCGTGTTGACGAGCACCAA
GGCCACCTGTATGATGAGCAGGAGCGGTTGATAGGGGCCGCGATTTCTGT
GAAGAATCCGGAGGATATTAACAATGCAATTAAACTAGTGGGTAGTGTGG
ATTGGCTCGTGCTTGAATTCTTCATTGACTGGATTCAAATTCCCTGTGAA
AACGTAATTGCCGCGGCGCAGGGCAGTCCCACAAGAATTTGTGTCAAACC
GAACAAAATAGATGATGTCCCCGGGGTAGCATTTGCGTTGCAAACGGGCG
TGGACGCGTTGTTGCTTGAGTTGCAGGACGAGTCTATGTGGGTGGCGGCG
CGTGAAGCGCAAGCTCGTAAGGACACAAACCGACAGACGGCTGCCGCTGG
TGGTACTGCTGCTGTTGCTGTTGCTCTTGGAGAACACCACGAAGAAACGG
CAGGACACATATCCCTGGTTCCCGCTCGAGTCATAAATATAGTGTCAGGA
GGATTGGGTGATCGTGTGTGTCTGGATCTTGTGCAACTTCTGAAGGAAGG
GGAGGGCTGCTTGGTGGGTTCATCAGCCAAGGCATTAGCGTTGGTGCAAG
CTGAAGTGCTGCCCACTGGTTATATAAATCCACGCCCCTTTCGCGTTAAT
GCTGGCCCTGTGCACTCCTACGTGTTGATGGCCGATGGCAGTGCTAGGTA
TCTCTCGGAGGTCCAGGCGGGGGATCAAGTCAAGGTGGTGAATTGGCGAG
GACAAGCAAGGGGGGTCACCGTGGGGAGGTGTAAAGTCGAGAGTCGGCCT
CTGGTGAAGGTGGCGTTCGAATGGGGAGAGGAGGGGAGGGAGGGATGGGG
GGAGGAGAAGAAGACGGCGCAGGTGTTCTTGCAACAGGCCGAGACGGTGC
GATTTGAAAAGCGGCAGGGGGCGGGAATCAGTGTGACGGAAGTGATTATT
GGGAAGAAGGTATTAGTACGAGCGCAAAGCAAGGGAACGCATTTGGGGAG
GACGATTGAGGCGAGGGTGGAGGAGAGGTGA
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protein sequence of jgi.p|Nanoce1779_2|522346

>mRNA_1392-protein ID=mRNA_1392-protein|Name=jgi.p|Nanoce1779_2|522346|organism=Nannochloropsis oceanica|type=polypeptide|length=377bp
MTSLELWANCLKRDSKGNHPIPTGATRCFDIKDGLLKASSTPQIRVDEHQ
GHLYDEQERLIGAAISVKNPEDINNAIKLVGSVDWLVLEFFIDWIQIPCE
NVIAAAQGSPTRICVKPNKIDDVPGVAFALQTGVDALLLELQDESMWVAA
REAQARKDTNRQTAAAGGTAAVAVALGEHHEETAGHISLVPARVINIVSG
GLGDRVCLDLVQLLKEGEGCLVGSSAKALALVQAEVLPTGYINPRPFRVN
AGPVHSYVLMADGSARYLSEVQAGDQVKVVNWRGQARGVTVGRCKVESRP
LVKVAFEWGEEGREGWGEEKKTAQVFLQQAETVRFEKRQGAGISVTEVII
GKKVLVRAQSKGTHLGRTIEARVEER*
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mRNA from alignment at scaffold_1:448857..450053-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1392 ID=mRNA_1392|Name=jgi.p|Nanoce1779_2|522346|organism=Nannochloropsis oceanica|type=mRNA|length=1197bp|location=Sequence derived from alignment at scaffold_1:448857..450053- (Nannochloropsis oceanica)
ATGACGTCCTTAGAGCTATGGGCTAATTGTTTAAAACGCGACTCAAAGGG
AAATCATCCTATTCCAACGGGCGCCACACGGTGTTTTGACATCAAAGATG
GCTTATTGAAAGCCTCGTCTACCCCGCAGATTCGTGTTGACGAGCACCAA
GGCCACCTGTATGATGAGCAGGAGCGGTTGATAGGGGCCGCGATTTCTGT
GAAGAATCCGGAGGATATTAACAATGCAATTAAACTAGTGGGTAGTGTGG
ATTGGCTCGTGCTTGAATTCTTCATTGACTGGATTCAAATTCCCTGTGAA
AACGTAATTGCCGCGGCGCAGGGCAGTCCCACAAGAATTTGTGTCAAACC
GAACAAAATAGATGATGTCCCCGGGGTAGCATTTGCGTTGCAAACGGGCG
TGGACGCGTTGTTGCTTGAGTTGCAGGACGAGTCTATGTGGGTGGCGGCG
CGTGAAGCGCAAGCTCGTAAGGACACAAACCGACAGACGGCTGCCGCTGG
TGGTACTGCTGCTGTTGCTGTTGCTCTTGGAGAACACCACGAAGAAACGG
CAGGACACATATCCCTGGTTCCCGCTCGAGTCATAAATATAGTGTCAGGA
GGATTGGGTGATCGTGTGTGTCTGGATCTTGTGCAACTTCTGAAGGAAGG
GGAGGGCTGCTTGGTGGGTTCATCAGCCAAGGCATTAGCGTTGGTGCAAG
CTGAAGTGCTGCCCACTGGTTATATAAATCCACGCCCCTTTCGCGTTAAT
GCTGGCCCTGTGCACTCCTACGTGTTGATGGCCGATGGCAGTGCTAGGTA
TCTCTCGGAGGTCCAGGCGGGGGATCAAGTCAAGGTGGTGAATTGGCGAG
GACAAGCAAGGGGGGTCACCGTGGGGAGGTGTAAAGTCGAGAGTCGGCCT
CTGGTGAAGGTGGCGTTCGAATGGGGAGAGGAGGGGAGGGAGGGATGGGG
GGAGGAGAAGAAGACGGCGCAGGTGTTCTTGCAACAGGCCGAGACGGTGC
GATTTGTGGGGAATCCCGGCGGGGATGGAGGAGATGGGGATGATGAATTC
AGACTTTCCGGAACAGAGGAGGAAAAGCGGCAGGGGGCGGGAATCAGTGT
GACGGAAGTGATTATTGGGAAGAAGGTATTAGTACGAGCGCAAAGCAAGG
GAACGCATTTGGGGAGGACGATTGAGGCGAGGGTGGAGGAGAGGTGA
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Coding sequence (CDS) from alignment at scaffold_1:448857..450053-

>mRNA_1392 ID=mRNA_1392|Name=jgi.p|Nanoce1779_2|522346|organism=Nannochloropsis oceanica|type=CDS|length=2262bp|location=Sequence derived from alignment at scaffold_1:448857..450053- (Nannochloropsis oceanica)
GAAAAGCGGCAGGGGGCGGGAATCAGTGTGACGGAAGTGATTATTGGGAA
GAAGGTATTAGTACGAGCGCAAAGCAAGGGAACGCATTTGGGGAGGACGA
TTGAGGCGAGGGTGGAGGAGAGGTGAATGACGTCCTTAGAGCTATGGGCT
AATTGTTTAAAACGCGACTCAAAGGGAAATCATCCTATTCCAACGGGCGC
CACACGGTGTTTTGACATCAAAGATGGCTTATTGAAAGCCTCGTCTACCC
CGCAGATTCGTGTTGACGAGCACCAAGGCCACCTGTATGATGAGCAGGAG
CGGTTGATAGGGGCCGCGATTTCTGTGAAGAATCCGGAGGATATTAACAA
TGCAATTAAACTAGTGGGTAGTGTGGATTGGCTCGTGCTTGAATTCTTCA
TTGACTGGATTCAAATTCCCTGTGAAAACGTAATTGCCGCGGCGCAGGGC
AGTCCCACAAGAATTTGTGTCAAACCGAACAAAATAGATGATGTCCCCGG
GGTAGCATTTGCGTTGCAAACGGGCGTGGACGCGTTGTTGCTTGAGTTGC
AGGACGAGTCTATGTGGGTGGCGGCGCGTGAAGCGCAAGCTCGTAAGGAC
ACAAACCGACAGACGGCTGCCGCTGGTGGTACTGCTGCTGTTGCTGTTGC
TCTTGGAGAACACCACGAAGAAACGGCAGGACACATATCCCTGGTTCCCG
CTCGAGTCATAAATATAGTGTCAGGAGGATTGGGTGATCGTGTGTGTCTG
GATCTTGTGCAACTTCTGAAGGAAGGGGAGGGCTGCTTGGTGGGTTCATC
AGCCAAGGCATTAGCGTTGGTGCAAGCTGAAGTGCTGCCCACTGGTTATA
TAAATCCACGCCCCTTTCGCGTTAATGCTGGCCCTGTGCACTCCTACGTG
TTGATGGCCGATGGCAGTGCTAGGTATCTCTCGGAGGTCCAGGCGGGGGA
TCAAGTCAAGGTGGTGAATTGGCGAGGACAAGCAAGGGGGGTCACCGTGG
GGAGGTGTAAAGTCGAGAGTCGGCCTCTGGTGAAGGTGGCGTTCGAATGG
GGAGAGGAGGGGAGGGAGGGATGGGGGGAGGAGAAGAAGACGGCGCAGGT
GTTCTTGCAACAGGCCGAGACGGTGCGATTTGAAAAGCGGCAGGGGGCGG
GAATCAGTGTGACGGAAGTGATTATTGGGAAGAAGGTATTAGTACGAGCG
CAAAGCAAGGGAACGCATTTGGGGAGGACGATTGAGGCGAGGGTGGAGGA
GAGGTGAATGACGTCCTTAGAGCTATGGGCTAATTGTTTAAAACGCGACT
CAAAGGGAAATCATCCTATTCCAACGGGCGCCACACGGTGTTTTGACATC
AAAGATGGCTTATTGAAAGCCTCGTCTACCCCGCAGATTCGTGTTGACGA
GCACCAAGGCCACCTGTATGATGAGCAGGAGCGGTTGATAGGGGCCGCGA
TTTCTGTGAAGAATCCGGAGGATATTAACAATGCAATTAAACTAGTGGGT
AGTGTGGATTGGCTCGTGCTTGAATTCTTCATTGACTGGATTCAAATTCC
CTGTGAAAACGTAATTGCCGCGGCGCAGGGCAGTCCCACAAGAATTTGTG
TCAAACCGAACAAAATAGATGATGTCCCCGGGGTAGCATTTGCGTTGCAA
ACGGGCGTGGACGCGTTGTTGCTTGAGTTGCAGGACGAGTCTATGTGGGT
GGCGGCGCGTGAAGCGCAAGCTCGTAAGGACACAAACCGACAGACGGCTG
CCGCTGGTGGTACTGCTGCTGTTGCTGTTGCTCTTGGAGAACACCACGAA
GAAACGGCAGGACACATATCCCTGGTTCCCGCTCGAGTCATAAATATAGT
GTCAGGAGGATTGGGTGATCGTGTGTGTCTGGATCTTGTGCAACTTCTGA
AGGAAGGGGAGGGCTGCTTGGTGGGTTCATCAGCCAAGGCATTAGCGTTG
GTGCAAGCTGAAGTGCTGCCCACTGGTTATATAAATCCACGCCCCTTTCG
CGTTAATGCTGGCCCTGTGCACTCCTACGTGTTGATGGCCGATGGCAGTG
CTAGGTATCTCTCGGAGGTCCAGGCGGGGGATCAAGTCAAGGTGGTGAAT
TGGCGAGGACAAGCAAGGGGGGTCACCGTGGGGAGGTGTAAAGTCGAGAG
TCGGCCTCTGGTGAAGGTGGCGTTCGAATGGGGAGAGGAGGGGAGGGAGG
GATGGGGGGAGGAGAAGAAGACGGCGCAGGTGTTCTTGCAACAGGCCGAG
ACGGTGCGATTT
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Synonyms
Publications