jgi.p|Nanoce1779_2|571946, mRNA_1390 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571946
Unique NamemRNA_1390
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length926
Alignment locationscaffold_1:445073..445998 -

Link to JBrowse

Properties
Property NameValue
TranscriptId572032
TrackFilteredModels2
ProteinId571946
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:445073..445998 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571946gene_1390Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571946mRNA_1390-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1390CDS_1390Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1390 ID=mRNA_1390|Name=jgi.p|Nanoce1779_2|571946|organism=Nannochloropsis oceanica|type=mRNA|length=926bp
AACAGGCGACGCTTGATAGTGGATTATGCGGCTTGCTATCATTGTCACGG
TGGGTTTTCTGTCATCATCGGCGGATGCCTTTACAATGAAGGCGGGTACC
CATTCATCTCCTACCCCACATCGTCATCGTCGAACCATCTCCCATGGCAC
CCGCAAAGACGCTTTGTTGCAGACTTCCTTCGGTGCTCTGGCTTTGGGTT
TTGCGGCCAGTGGCGTGGTCATGCCATCACCACGCCGGGCGCAGGCCTTT
CCGTTCGGCGGGGGGGAAGATGTGACAGGAGCCTTGGACGAAGTGGCCCG
TGCCCGTCAAAAAGTGGAAGAGGTATTGAGCGGGTTGAAATCTAAGCAAC
TAAAGGGGGGCAAGGAAGACTCGGCGACGATTGTTCGATACATGGATGCG
CATTACAAGCCGTTGCAAGAAAAGATGCTGGTCTTGGCTCCCAAGTTGAA
GCTTGCGGATGAAGTGAAGCAGAAGCGCGCGGAGCTCTTGCCTCTGTTGT
TAAAAGGGCACTTGGCCGAGCTAGCAGCCGCGGCACGCACGGGTGTTGCC
AGTGAACAGCTACAGGAGATGGAGGAGGTGGCAGAGAGTGTGGATGAGTT
TTTGGCCCTGGCGAAGGAGGGGGGAAAGGAAGTGAAGAGCTACTTGGGCC
CGGCGCCTGAATTTGACGTCACGAGGGAGTATGGACCGTTTGCGTGCGAA
TTCTGGGGAAAAGTGAGGTTGCCCGAAAGCAATGTATGTGTGTGGCCTGA
TGAATTGGGCGCGAAGAAGTAGAAGGGGGGAGGGGGAGGATGGTGGCGGG
GGAGGAAAGGGGAGGGGTAGCAGTGAGCAGGCTTGTGCGAGGAAGGTGAG
ATACCCTCGACAATTATGCAAGTGATTCAAACCGCAAATAGCAATATGGA
AAGAGAAGTAATGCACCCAAAATTGA
back to top

protein sequence of jgi.p|Nanoce1779_2|571946

>mRNA_1390-protein ID=mRNA_1390-protein|Name=jgi.p|Nanoce1779_2|571946|organism=Nannochloropsis oceanica|type=polypeptide|length=249bp
MRLAIIVTVGFLSSSADAFTMKAGTHSSPTPHRHRRTISHGTRKDALLQT
SFGALALGFAASGVVMPSPRRAQAFPFGGGEDVTGALDEVARARQKVEEV
LSGLKSKQLKGGKEDSATIVRYMDAHYKPLQEKMLVLAPKLKLADEVKQK
RAELLPLLLKGHLAELAAAARTGVASEQLQEMEEVAESVDEFLALAKEGG
KEVKSYLGPAPEFDVTREYGPFACEFWGKVRLPESNVCVWPDELGAKK*
back to top

mRNA from alignment at scaffold_1:445073..445998-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1390 ID=mRNA_1390|Name=jgi.p|Nanoce1779_2|571946|organism=Nannochloropsis oceanica|type=mRNA|length=926bp|location=Sequence derived from alignment at scaffold_1:445073..445998- (Nannochloropsis oceanica)
AACAGGCGACGCTTGATAGTGGATTATGCGGCTTGCTATCATTGTCACGG
TGGGTTTTCTGTCATCATCGGCGGATGCCTTTACAATGAAGGCGGGTACC
CATTCATCTCCTACCCCACATCGTCATCGTCGAACCATCTCCCATGGCAC
CCGCAAAGACGCTTTGTTGCAGACTTCCTTCGGTGCTCTGGCTTTGGGTT
TTGCGGCCAGTGGCGTGGTCATGCCATCACCACGCCGGGCGCAGGCCTTT
CCGTTCGGCGGGGGGGAAGATGTGACAGGAGCCTTGGACGAAGTGGCCCG
TGCCCGTCAAAAAGTGGAAGAGGTATTGAGCGGGTTGAAATCTAAGCAAC
TAAAGGGGGGCAAGGAAGACTCGGCGACGATTGTTCGATACATGGATGCG
CATTACAAGCCGTTGCAAGAAAAGATGCTGGTCTTGGCTCCCAAGTTGAA
GCTTGCGGATGAAGTGAAGCAGAAGCGCGCGGAGCTCTTGCCTCTGTTGT
TAAAAGGGCACTTGGCCGAGCTAGCAGCCGCGGCACGCACGGGTGTTGCC
AGTGAACAGCTACAGGAGATGGAGGAGGTGGCAGAGAGTGTGGATGAGTT
TTTGGCCCTGGCGAAGGAGGGGGGAAAGGAAGTGAAGAGCTACTTGGGCC
CGGCGCCTGAATTTGACGTCACGAGGGAGTATGGACCGTTTGCGTGCGAA
TTCTGGGGAAAAGTGAGGTTGCCCGAAAGCAATGTATGTGTGTGGCCTGA
TGAATTGGGCGCGAAGAAGTAGAAGGGGGGAGGGGGAGGATGGTGGCGGG
GGAGGAAAGGGGAGGGGTAGCAGTGAGCAGGCTTGTGCGAGGAAGGTGAG
ATACCCTCGACAATTATGCAAGTGATTCAAACCGCAAATAGCAATATGGA
AAGAGAAGTAATGCACCCAAAATTGA
back to top

Coding sequence (CDS) from alignment at scaffold_1:445073..445998-

>mRNA_1390 ID=mRNA_1390|Name=jgi.p|Nanoce1779_2|571946|organism=Nannochloropsis oceanica|type=CDS|length=747bp|location=Sequence derived from alignment at scaffold_1:445073..445998- (Nannochloropsis oceanica)
ATGCGGCTTGCTATCATTGTCACGGTGGGTTTTCTGTCATCATCGGCGGA
TGCCTTTACAATGAAGGCGGGTACCCATTCATCTCCTACCCCACATCGTC
ATCGTCGAACCATCTCCCATGGCACCCGCAAAGACGCTTTGTTGCAGACT
TCCTTCGGTGCTCTGGCTTTGGGTTTTGCGGCCAGTGGCGTGGTCATGCC
ATCACCACGCCGGGCGCAGGCCTTTCCGTTCGGCGGGGGGGAAGATGTGA
CAGGAGCCTTGGACGAAGTGGCCCGTGCCCGTCAAAAAGTGGAAGAGGTA
TTGAGCGGGTTGAAATCTAAGCAACTAAAGGGGGGCAAGGAAGACTCGGC
GACGATTGTTCGATACATGGATGCGCATTACAAGCCGTTGCAAGAAAAGA
TGCTGGTCTTGGCTCCCAAGTTGAAGCTTGCGGATGAAGTGAAGCAGAAG
CGCGCGGAGCTCTTGCCTCTGTTGTTAAAAGGGCACTTGGCCGAGCTAGC
AGCCGCGGCACGCACGGGTGTTGCCAGTGAACAGCTACAGGAGATGGAGG
AGGTGGCAGAGAGTGTGGATGAGTTTTTGGCCCTGGCGAAGGAGGGGGGA
AAGGAAGTGAAGAGCTACTTGGGCCCGGCGCCTGAATTTGACGTCACGAG
GGAGTATGGACCGTTTGCGTGCGAATTCTGGGGAAAAGTGAGGTTGCCCG
AAAGCAATGTATGTGTGTGGCCTGATGAATTGGGCGCGAAGAAGTAG
back to top
Synonyms
Publications