jgi.p|Nanoce1779_2|576344, mRNA_139 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576344
Unique NamemRNA_139
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1152
Alignment locationscaffold_3:363814..364965 -

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Properties
Property NameValue
TranscriptId576430
TrackFilteredModels2
ProteinId576344
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:363814..364965 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576344gene_139Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576344mRNA_139-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_139CDS_139Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_139 ID=mRNA_139|Name=jgi.p|Nanoce1779_2|576344|organism=Nannochloropsis oceanica|type=mRNA|length=1152bp
GCGTTTTGAAACTCTTTGAGCTCGCTGATGGATAGTGTCAAGTCCCTCGG
CAGCGGCTCGGCCTCGGTCTTCTCATTGACATGCTTGTGCCTTTTGAAGA
GTCTTTTGCGATTCTTATTGTCTTCATCATCGTGCCATTTCTGCTTCTCT
TGCCGTTTGGCCGGCGGCGGGACTCGAAAGAGTGCGGACTGCTCGGGGTT
AGTATTGACGCGGTGTGTCACAACATCACTTATCGTATACCCCCAATTTG
CTCGAAATTGTCGTGAGAGAGTTAGCCCTTGACCGTAAGCAAATGTGCAG
GTGGCCGTCTCGGTAGGTGACTGGTTCTCACAGCGCACGCGGCCGTTTGG
CAAGGGAATACGCGGGGCGGCAAAGGTACTCTGATCAAAAAATAATAATG
CCTCTTGCTCTAAATAGACCAAGTCGTCAGCGCCAAAGCCTGACATGGGT
CTCCGCCAGCACCGAAAGGATTCCGTATGAGGAGTTTGGTCATACACAGC
GATTGAACACTCTTTCACACCTGGTTGGTCTAATTCCCGGCTCCTGGCCA
AAATGTTGATGCGAAGATAGCGCCATGCAATGGGACGAATGGGACGGGAA
GAATAGAAACAGGCGATTCCATCCACACCAAAGACATTGTTGACCCAGGG
ATGGGGGTCTGACGGCGGCGTCAAGACATTTGGCTGGGGGCCAGGTTGTG
ATTGATCGGCTTTGTTATAGTGTTTACGGAACGGGTGTGCCTGCTGGCTA
ACGTCCACCACTGGCGGTAAAAAGCGGACCACGAGACCTCCCTCCTGCTC
ATCGTAAAATAAACCCGCGCCGTGTGGTGTCAAGAGAGCCACGGCTCCAC
TGTCACCATGCATGACTATAGTCCACAAACACCAGGCGGGATCGCGATTC
CAGGATAAAAACAGGCGATTCTGGTCATTAACACAGAGGTATTCATTGGT
GTTAATGTTTTTTAGAAAGGCGTCATAGCAGTCGTGGCACCATGGGTAAG
CGCAGGATGTCGGGCCCTGATCTGCGTTGACGTTGGGATTTGTTGAGGGG
TCAGAGTTGTTACGGTGGCTGCCATTACCGTTGTCGTTGTTGTTGTTGTT
GCTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TG
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protein sequence of jgi.p|Nanoce1779_2|576344

>mRNA_139-protein ID=mRNA_139-protein|Name=jgi.p|Nanoce1779_2|576344|organism=Nannochloropsis oceanica|type=polypeptide|length=85bp
MDSVKSLGSGSASVFSLTCLCLLKSLLRFLLSSSSCHFCFSCRLAGGGTR
KSADCSGLVLTRCVTTSLIVYPQFARNCRERVSP*
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mRNA from alignment at scaffold_3:363814..364965-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_139 ID=mRNA_139|Name=jgi.p|Nanoce1779_2|576344|organism=Nannochloropsis oceanica|type=mRNA|length=1152bp|location=Sequence derived from alignment at scaffold_3:363814..364965- (Nannochloropsis oceanica)
GCGTTTTGAAACTCTTTGAGCTCGCTGATGGATAGTGTCAAGTCCCTCGG
CAGCGGCTCGGCCTCGGTCTTCTCATTGACATGCTTGTGCCTTTTGAAGA
GTCTTTTGCGATTCTTATTGTCTTCATCATCGTGCCATTTCTGCTTCTCT
TGCCGTTTGGCCGGCGGCGGGACTCGAAAGAGTGCGGACTGCTCGGGGTT
AGTATTGACGCGGTGTGTCACAACATCACTTATCGTATACCCCCAATTTG
CTCGAAATTGTCGTGAGAGAGTTAGCCCTTGACCGTAAGCAAATGTGCAG
GTGGCCGTCTCGGTAGGTGACTGGTTCTCACAGCGCACGCGGCCGTTTGG
CAAGGGAATACGCGGGGCGGCAAAGGTACTCTGATCAAAAAATAATAATG
CCTCTTGCTCTAAATAGACCAAGTCGTCAGCGCCAAAGCCTGACATGGGT
CTCCGCCAGCACCGAAAGGATTCCGTATGAGGAGTTTGGTCATACACAGC
GATTGAACACTCTTTCACACCTGGTTGGTCTAATTCCCGGCTCCTGGCCA
AAATGTTGATGCGAAGATAGCGCCATGCAATGGGACGAATGGGACGGGAA
GAATAGAAACAGGCGATTCCATCCACACCAAAGACATTGTTGACCCAGGG
ATGGGGGTCTGACGGCGGCGTCAAGACATTTGGCTGGGGGCCAGGTTGTG
ATTGATCGGCTTTGTTATAGTGTTTACGGAACGGGTGTGCCTGCTGGCTA
ACGTCCACCACTGGCGGTAAAAAGCGGACCACGAGACCTCCCTCCTGCTC
ATCGTAAAATAAACCCGCGCCGTGTGGTGTCAAGAGAGCCACGGCTCCAC
TGTCACCATGCATGACTATAGTCCACAAACACCAGGCGGGATCGCGATTC
CAGGATAAAAACAGGCGATTCTGGTCATTAACACAGAGGTATTCATTGGT
GTTAATGTTTTTTAGAAAGGCGTCATAGCAGTCGTGGCACCATGGGTAAG
CGCAGGATGTCGGGCCCTGATCTGCGTTGACGTTGGGATTTGTTGAGGGG
TCAGAGTTGTTACGGTGGCTGCCATTACCGTTGTCGTTGTTGTTGTTGTT
GCTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TG
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Coding sequence (CDS) from alignment at scaffold_3:363814..364965-

>mRNA_139 ID=mRNA_139|Name=jgi.p|Nanoce1779_2|576344|organism=Nannochloropsis oceanica|type=CDS|length=255bp|location=Sequence derived from alignment at scaffold_3:363814..364965- (Nannochloropsis oceanica)
ATGGATAGTGTCAAGTCCCTCGGCAGCGGCTCGGCCTCGGTCTTCTCATT
GACATGCTTGTGCCTTTTGAAGAGTCTTTTGCGATTCTTATTGTCTTCAT
CATCGTGCCATTTCTGCTTCTCTTGCCGTTTGGCCGGCGGCGGGACTCGA
AAGAGTGCGGACTGCTCGGGGTTAGTATTGACGCGGTGTGTCACAACATC
ACTTATCGTATACCCCCAATTTGCTCGAAATTGTCGTGAGAGAGTTAGCC
CTTGA
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Synonyms
Publications