jgi.p|Nanoce1779_2|571942, mRNA_1389 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|571942
Unique Name	mRNA_1389
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2480
Alignment location	scaffold_1:442157..445149 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	572028
Track	FilteredModels2
ProteinId	571942

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:442157..445149 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|571942	gene_1389	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|571942	mRNA_1389-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1389	CDS_1389	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:442157..445149+
coding sequence from alignment at scaffold_1:442157..445149+

mRNA sequence

>mRNA_1389 ID=mRNA_1389|Name=jgi.p|Nanoce1779_2|571942|organism=Nannochloropsis oceanica|type=mRNA|length=2480bp
AATTACAATGTCTTTAAAATTGACAGTGTCATTCACATTTTATTCTCTTT
CATTTCATTTCCTCTTCGTATTTTTCAAACTCACTACCGATTTCGCCCTA
TCCTTATTCTTCCTTCCCTTCTCTACCTTATTTTTCAAAGCCCTCCCACA
AAAAAGAAGCTTTCTTACGGGCAATTGGCAACGTCAGTCGAGGTAGCACC
GCATCCACCGTGTGGAAGTCCGCCTCGCTCCGGCCCTCCTCCTTCACTGT
CGTCTTGCTGTAAATCAAAATTGTTTTCATCCCTAGCTCCTTTGCCGCCA
TCAAATTTTTGAAGCTGTCCTCAAAAAGGACCACCTCCCTCCCTTTCTCC
CCCTCTCCCTCCAGCGAAGACACAGGCAACGCCGCCAAGACCTTTTCAAA
CGCCTCTTTTTCGGGCTTGCAGTAATCGCCCATGTGGTCACTGCCATACA
CACCATCAAAATGCCTTTCAACTCCTAGACAGACCAACGCCTCCATGGCC
TGCTCTTCCCGCGCATTGGTGAAGATGTATTTTGGACATTCCTTGGGTAG
GGCACTTAAAAACACATCTAGTTCAGCATCAGGGGAGAGGAAGCGATTGA
CGTCCTTACGGATATACCGCCAGTAATGAATGGACTGAGAGTCTTCTATC
CAGCCTTGCGCTTTGAAAGCACGGAAAGACTGGTGGTATTTGTTGAAAAG
CGGGCGCCAGACGTCCTCCGCCGGGGTGGAACGCGGGATGCCCAAGTGTT
CGTGCATGTACTCCCACAGGTTATTAAGGATGTGGTCACGGTAGCCATTT
TCGTTCGGGTAGAGAGTCCCGTCCAAGTCAAACAGAAAGACCTTGCGAGC
CTTGGCGCCGCCTCGTTTTGCTACCATTGCTGCCTCCGCCGCCGCCGCCG
ATGCCTATTTTCAGAGGTATCGGAAGGAGGGAATAATATGAGGACCAGGC
ATCCTGCATCAGGACATTGATGCGCTTGTGTATGCTTGCACGATGGGCCC
GCAGCAATTGTGGCTGGCTGGGCTGCAGGCATAGACAACCCTGCAGTCTT
GGATCATCATCGCAGCTTTCCTCAATCAATGCACTTACCATTTTGACCAC
ACCACACGCGAGGCTTGCCGCGCCCAACCTCTACGCCCTTCCGCTTGTAT
TTATCATTATTGTTGTCTTATCCCAGAACTTTTTCAGGAATGACTGGGGC
CGTCATCCCCGTAGCCCAGCTCCTGAGCCTGCCCTTCCTCTTCCTCCTAC
TTGCCGAGGGTTCGCCATTACCATCAGCAGCCTTTGTACTCCCGGCACTG
TCGCAGGCCAAAAGGCCACGCCCACCCTCAAGGTCCTTCTCCTCCGATGC
ACTGATAAAACACGCTCGTTTCATCTTTGTCTCGTCCAGCCCCGCCTCCT
CCCTACTCTCCTTTCCTCACTCGTCATCCTGCCCTTCCTTCCTCTCACCC
AAAGACAACACCGATACCGATACTGACGACGACGCGGCCATCATTGCGCG
TACTTGCGCCTGGATTCATAACATGGTGATCCGCACCCCTCTCTGTCCTT
TTGCGGAGAAGGTAATAAAAGACGACACCGTAAAATACGTCGTCACCCGT
GTCCGAAAGAGAAAAGAAGTTGCCGTGCTGGTGCTGGAGGAGGCCCTCGC
ATTAATTGGGGTCCCTGAGACAGAGACAGCTACCACAGTCTTGATCGCGC
CTTATGCATTTGTTGAGGATTTTCCGGCATTCTACGAGACGGAACGGTTC
CTGGAAGACCATCTAGAAGAGAGCCCATTGGGGGAGGAAGTGCTCGTGGC
GTCTTTTCACCCTCAGTACATGTTCGGTGGAGGGGTAAAAGATGATGACC
CGATTCATTATGAAAAGCGCTCCCCATATCCTGTGTTTAATTTGTTGAGA
GCACAAAGGGTGTGGGCGTACGCGGATGAGGGTTTGACAGAGAAGATCGC
TGATAAGAACGCGGAGGCTTTGGAAGAGCTAGGGATAAAGGAGGTGAGAA
GACGGTTTGCATTGGACAAAATAGAGGTGGAGGGAGAAGGGATAATCTGA
AAATATAGCGAGTTAATGCATTTTTTTAAAGCCATCAGATTTCGAGAGGG
TGGTTTGATAGTAGGCCGTCAGGGATGCAATATGTAAAGAAAATCAACCA
AATCTAGAAGAGATGTAGTCCTTTCCCCCCACTTCAAACCGATAGTGCGG
AAAACAGCAACCAGTCACACGGCTTGTCACGATCGGTTGGCTGCACTCAT
ATGCCATGTGCTGAAACACGACTGCTTCCTACCGCGAAGAGCACTCTGCG
AGCTCGGTGCACTCTCCCATGCTTTCCTTCCTTCCCTTTCTCTCTATTTT
CCCCGAAGGCAGAGAGGAAGGAACGCAAAAAAATATAAAACAACATTCAG
AACTCAATTTTGGGTGCATTACTTCTCTTTCCATATTGCTATTTGCGGTT
TGAATCACTTGCATAATTGTCGAGGGTATC

protein sequence of jgi.p|Nanoce1779_2|571942

>mRNA_1389-protein ID=mRNA_1389-protein|Name=jgi.p|Nanoce1779_2|571942|organism=Nannochloropsis oceanica|type=polypeptide|length=287bp
MTGAVIPVAQLLSLPFLFLLLAEGSPLPSAAFVLPALSQAKRPRPPSRSF
SSDALIKHARFIFVSSSPASSLLSFPHSSSCPSFLSPKDNTDTDTDDDAA
IIARTCAWIHNMVIRTPLCPFAEKVIKDDTVKYVVTRVRKRKEVAVLVLE
EALALIGVPETETATTVLIAPYAFVEDFPAFYETERFLEDHLEESPLGEE
VLVASFHPQYMFGGGVKDDDPIHYEKRSPYPVFNLLRAQRVWAYADEGLT
EKIADKNAEALEELGIKEVRRRFALDKIEVEGEGII*

mRNA from alignment at scaffold_1:442157..445149+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1389 ID=mRNA_1389|Name=jgi.p|Nanoce1779_2|571942|organism=Nannochloropsis oceanica|type=mRNA|length=2993bp|location=Sequence derived from alignment at scaffold_1:442157..445149+ (Nannochloropsis oceanica)
AATTACAATGTCTTTAAAATTGACAGTGTCATTCACATTTTATTCTCTTT
CATTTCATTTCCTCTTCGTATTTTTCAAACTCACTACCGATTTCGCCCTA
TCCTTATTCTTCCTTCCCTTCTCTACCTTATTTTTCAAAGCCCTCCCACA
AAAAAGAAGCTTTCTTACGGGCAATTGGCAACGTCAGTCGAGGTAGCACC
GCATCCACCGTGTGGAAGTCCGCCTCGCTCCGGCCCTCCTCCTTCACTGT
CGTCTTGCTGTCTGTCAGGTTCAGGGTAGAGGGAGGGGTAAGAGACAAAA
ATAAGTAAGAAATCGATAAATACAACAGTTCAACGCACCATTTTGCTTTC
CCCTCATGCCATTCTCAGCCTAAACGAGCACTTACAAATCAAAATTGTTT
TCATCCCTAGCTCCTTTGCCGCCATCAAATTTTTGAAGCTGTCCTCAAAA
AGGACCACCTCCCTCCCTTTCTCCCCCTCTCCCTCCAGCGAAGACACAGG
CAACGCCGCCAAGACCTTTTCAAACGCCTCTTTTTCGGGCTTGCAGTAAT
CGCCCATGTGGTCACTGCCATACACACCATCAAAATGCCTTTCAACTCCT
AGACAGACCAACGCCTCCATGGCCTGCTCTTCCCGCGCATTGGTGAAGAT
GTATTTTGGACATTCCTTGGGTAGGGCACTTAAAAACACATCTAGTTCAG
CATCAGGGGAGAGGAAGCGATTGACGTCCTTACGGATATACCGCCAGTAA
TGAATGGACTGAGAGTCTTCTATCCAGCCTTGCGCTTTGAAAGCACGGAA
AGACTGGTGGTATTTGTTGAAAAGCGGGCGCCTATGAGGTGTGAAGGGAG
GGAGGGATAGAGAGAGAGAAGTGAGGAAGGGGAAGAATATCAATTAGGAG
CACGCATCGATACTTTACACGAGACAATATTCGCCATCCTGGACATGAGC
TGTCCGAAGCTCTCGTCGAGAGCTCACTTAAATGACGTCCCTTCCCTTCC
TCACCCGCCATCCCTGCCCCCAAAATGACAAGCAACCCCCATACTTTACT
TACCAGACGTCCTCCGCCGGGGTGGAACGCGGGATGCCCAAGTGTTCGTG
CATGTACTCCCACAGGTTATTAAGGATGTGGTCACGGTAGCCATTTTCGT
TCGGGTAGAGAGTCCCGTCCAAGTCAAACAGAAAGACCTTGCGAGCCTTG
GCGCCGCCTCGTTTTGCTACCATTGCTGCCTCCGCCGCCGCCGCCGATGC
CTATTTTCAGAGGTATCGGAAGGAGGGAATAATATGAGGACCAGGCATCC
TGCATCAGGACATTGATGCGCTTGTGTATGCTTGCACGATGGGCCCGCAG
CAATTGTGGCTGGCTGGGCTGCAGGCATAGACAACCCTGCAGTCTTGGAT
CATCATCGCAGCTTTCCTCAATCAATGCACTTACCATTTTGACCACACCA
CACGCGAGGCTTGCCGCGCCCAACCTCTACGCCCTTCCGCTTGTATTTAT
CATTATTGTTGTCTTATCCCAGGTAAGCGTCGGCTGTGTGGTTGTGTGGG
TGTGGGCGTGAAGGAAGTTATGTGTGAGACTTCCATGCATCATCGTCACA
ATGCTCATCGCAGAAACGCAAGCTGGCTACGTGACACCCCAGTAACACTC
AAGCTTAACATGTGCATGCTCCACTCCTTTGACATGTAGAACTTTTTCAG
GAATGACTGGGGCCGTCATCCCCGTAGCCCAGCTCCTGAGCCTGCCCTTC
CTCTTCCTCCTACTTGCCGAGGGTTCGCCATTACCATCAGCAGCCTTTGT
ACTCCCGGCACTGTCGCAGGCCAAAAGGCCACGCCCACCCTCAAGGTCCT
TCTCCTCCGATGCACTGATAAAACACGCTCGTTTCATCTTTGTCTCGTCC
AGCCCCGCCTCCTCCCTACTCTCCTTTCCTCACTCGTCATCCTGCCCTTC
CTTCCTCTCACCCAAAGACAACACCGATACCGATACTGACGACGACGCGG
CCATCATTGCGCGTACTTGCGCCTGGATTCATAACATGGTGATCCGCACC
CCTCTCTGTCCTTTTGCGGAGAAGGTAATAAAAGACGACACCGTAAAATA
CGTCGTCACCCGTGTCCGAAAGAGAAAAGAAGTTGCCGTGCTGGTGCTGG
AGGAGGCCCTCGCATTAATTGGGGTCCCTGAGACAGAGACAGCTACCACA
GTCTTGATCGCGCCTTATGCATTTGTTGAGGATTTTCCGGCATTCTACGA
GACGGAACGGTTCCTGGAAGACCATCTAGAAGAGAGCCCATTGGGGGAGG
AAGTGCTCGTGGCGTCTTTTCACCCTCAGTACATGTTCGGTGGAGGGGTA
AAAGATGATGACCCGATTCATTATGAAAAGCGCTCCCCATATCCTGTGTT
TAATTTGTTGAGAGCACAAAGGGTGTGGGCGTACGCGGATGAGGGTTTGA
CAGAGAAGATCGCTGATAAGAACGCGGAGGCTTTGGAAGAGCTAGGGATA
AAGGAGGTGAGAAGACGGTTTGCATTGGACAAAATAGAGGTGGAGGGAGA
AGGGATAATCTGAAAATATAGCGAGTTAATGCATTTTTTTAAAGCCATCA
GATTTCGAGAGGGTGGTTTGATAGTAGGCCGTCAGGGATGCAATATGTAA
AGAAAATCAACCAAATCTAGAAGAGATGTAGTCCTTTCCCCCCACTTCAA
ACCGATAGTGCGGAAAACAGCAACCAGTCACACGGCTTGTCACGATCGGT
TGGCTGCACTCATATGCCATGTGCTGAAACACGACTGCTTCCTACCGCGA
AGAGCACTCTGCGAGCTCGGTGCACTCTCCCATGCTTTCCTTCCTTCCCT
TTCTCTCTATTTTCCCCGAAGGCAGAGAGGAAGGAACGCAAAAAAATATA
AAACAACATTCAGAACTCAATTTTGGGTGCATTACTTCTCTTTCCATATT
GCTATTTGCGGTTTGAATCACTTGCATAATTGTCGAGGGTATC

Coding sequence (CDS) from alignment at scaffold_1:442157..445149+

>mRNA_1389 ID=mRNA_1389|Name=jgi.p|Nanoce1779_2|571942|organism=Nannochloropsis oceanica|type=CDS|length=861bp|location=Sequence derived from alignment at scaffold_1:442157..445149+ (Nannochloropsis oceanica)
ATGACTGGGGCCGTCATCCCCGTAGCCCAGCTCCTGAGCCTGCCCTTCCT
CTTCCTCCTACTTGCCGAGGGTTCGCCATTACCATCAGCAGCCTTTGTAC
TCCCGGCACTGTCGCAGGCCAAAAGGCCACGCCCACCCTCAAGGTCCTTC
TCCTCCGATGCACTGATAAAACACGCTCGTTTCATCTTTGTCTCGTCCAG
CCCCGCCTCCTCCCTACTCTCCTTTCCTCACTCGTCATCCTGCCCTTCCT
TCCTCTCACCCAAAGACAACACCGATACCGATACTGACGACGACGCGGCC
ATCATTGCGCGTACTTGCGCCTGGATTCATAACATGGTGATCCGCACCCC
TCTCTGTCCTTTTGCGGAGAAGGTAATAAAAGACGACACCGTAAAATACG
TCGTCACCCGTGTCCGAAAGAGAAAAGAAGTTGCCGTGCTGGTGCTGGAG
GAGGCCCTCGCATTAATTGGGGTCCCTGAGACAGAGACAGCTACCACAGT
CTTGATCGCGCCTTATGCATTTGTTGAGGATTTTCCGGCATTCTACGAGA
CGGAACGGTTCCTGGAAGACCATCTAGAAGAGAGCCCATTGGGGGAGGAA
GTGCTCGTGGCGTCTTTTCACCCTCAGTACATGTTCGGTGGAGGGGTAAA
AGATGATGACCCGATTCATTATGAAAAGCGCTCCCCATATCCTGTGTTTA
ATTTGTTGAGAGCACAAAGGGTGTGGGCGTACGCGGATGAGGGTTTGACA
GAGAAGATCGCTGATAAGAACGCGGAGGCTTTGGAAGAGCTAGGGATAAA
GGAGGTGAGAAGACGGTTTGCATTGGACAAAATAGAGGTGGAGGGAGAAG
GGATAATCTGA

Synonyms

Publications