jgi.p|Nanoce1779_2|571941, mRNA_1388 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571941
Unique NamemRNA_1388
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1000
Alignment locationscaffold_1:442157..443686 -

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Properties
Property NameValue
TranscriptId572027
TrackFilteredModels2
ProteinId571941
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:442157..443686 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571941gene_1388Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571941mRNA_1388-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1388CDS_1388Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1388 ID=mRNA_1388|Name=jgi.p|Nanoce1779_2|571941|organism=Nannochloropsis oceanica|type=mRNA|length=1000bp
ACGCTTACCTGGGATAAGACAACAATAATGATAAATACAAGCGGAAGGGC
GTAGAGGTTGGGCGCGGCAAGCCTCGCGTGTGGTGTGGTCAAAATGGCAT
CGGCGGCGGCGGCGGAGGCAGCAATGGTAGCAAAACGAGGCGGCGCCAAG
GCTCGCAAGGTCTTTCTGTTTGACTTGGACGGGACTCTCTACCCGAACGA
AAATGGCTACCGTGACCACATCCTTAATAACCTGTGGGAGTACATGCACG
AACACTTGGGCATCCCGCGTTCCACCCCGGCGGAGGACGTCTGGCGCCCG
CTTTTCAACAAATACCACCAGTCTTTCCGTGCTTTCAAAGCGCAAGGCTG
GATAGAAGACTCTCAGTCCATTCATTACTGGCGGTATATCCGTAAGGACG
TCAATCGCTTCCTCTCCCCTGATGCTGAACTAGATGTGTTTTTAAGTGCC
CTACCCAAGGAATGTCCAAAATACATCTTCACCAATGCGCGGGAAGAGCA
GGCCATGGAGGCGTTGGTCTGTCTAGGAGTTGAAAGGCATTTTGATGGTG
TGTATGGCAGTGACCACATGGGCGATTACTGCAAGCCCGAAAAAGAGGCG
TTTGAAAAGGTCTTGGCGGCGTTGCCTGTGTCTTCGCTGGAGGGAGAGGG
GGAGAAAGGGAGGGAGGTGGTCCTTTTTGAGGACAGCTTCAAAAATTTGA
TGGCGGCAAAGGAGCTAGGGATGAAAACAATTTTGATTTACAGCAAGACG
ACAGTGAAGGAGGAGGGCCGGAGCGAGGCGGACTTCCACACGGTGGATGC
GGTGCTACCTCGACTGACGTTGCCAATTGCCCGTAAGAAAGCTTCTTTTT
TGTGGGAGGGCTTTGAAAAATAAGGTAGAGAAGGGAAGGAAGAATAAGGA
TAGGGCGAAATCGGTAGTGAGTTTGAAAAATACGAAGAGGAAATGAAATG
AAAGAGAATAAAATGTGAATGACACTGTCAATTTTAAAGACATTGTAATT
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protein sequence of jgi.p|Nanoce1779_2|571941

>mRNA_1388-protein ID=mRNA_1388-protein|Name=jgi.p|Nanoce1779_2|571941|organism=Nannochloropsis oceanica|type=polypeptide|length=260bp
MASAAAAEAAMVAKRGGAKARKVFLFDLDGTLYPNENGYRDHILNNLWEY
MHEHLGIPRSTPAEDVWRPLFNKYHQSFRAFKAQGWIEDSQSIHYWRYIR
KDVNRFLSPDAELDVFLSALPKECPKYIFTNAREEQAMEALVCLGVERHF
DGVYGSDHMGDYCKPEKEAFEKVLAALPVSSLEGEGEKGREVVLFEDSFK
NLMAAKELGMKTILIYSKTTVKEEGRSEADFHTVDAVLPRLTLPIARKKA
SFLWEGFEK*
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mRNA from alignment at scaffold_1:442157..443686-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1388 ID=mRNA_1388|Name=jgi.p|Nanoce1779_2|571941|organism=Nannochloropsis oceanica|type=mRNA|length=1530bp|location=Sequence derived from alignment at scaffold_1:442157..443686- (Nannochloropsis oceanica)
ACGCTTACCTGGGATAAGACAACAATAATGATAAATACAAGCGGAAGGGC
GTAGAGGTTGGGCGCGGCAAGCCTCGCGTGTGGTGTGGTCAAAATGGTAA
GTGCATTGATTGAGGAAAGCTGCGATGATGATCCAAGACTGCAGGGTTGT
CTATGCCTGCAGCCCAGCCAGCCACAATTGCTGCGGGCCCATCGTGCAAG
CATACACAAGCGCATCAATGTCCTGATGCAGGATGCCTGGTCCTCATATT
ATTCCCTCCTTCCGATACCTCTGAAAATAGGCATCGGCGGCGGCGGCGGA
GGCAGCAATGGTAGCAAAACGAGGCGGCGCCAAGGCTCGCAAGGTCTTTC
TGTTTGACTTGGACGGGACTCTCTACCCGAACGAAAATGGCTACCGTGAC
CACATCCTTAATAACCTGTGGGAGTACATGCACGAACACTTGGGCATCCC
GCGTTCCACCCCGGCGGAGGACGTCTGGTAAGTAAAGTATGGGGGTTGCT
TGTCATTTTGGGGGCAGGGATGGCGGGTGAGGAAGGGAAGGGACGTCATT
TAAGTGAGCTCTCGACGAGAGCTTCGGACAGCTCATGTCCAGGATGGCGA
ATATTGTCTCGTGTAAAGTATCGATGCGTGCTCCTAATTGATATTCTTCC
CCTTCCTCACTTCTCTCTCTCTATCCCTCCCTCCCTTCACACCTCATAGG
CGCCCGCTTTTCAACAAATACCACCAGTCTTTCCGTGCTTTCAAAGCGCA
AGGCTGGATAGAAGACTCTCAGTCCATTCATTACTGGCGGTATATCCGTA
AGGACGTCAATCGCTTCCTCTCCCCTGATGCTGAACTAGATGTGTTTTTA
AGTGCCCTACCCAAGGAATGTCCAAAATACATCTTCACCAATGCGCGGGA
AGAGCAGGCCATGGAGGCGTTGGTCTGTCTAGGAGTTGAAAGGCATTTTG
ATGGTGTGTATGGCAGTGACCACATGGGCGATTACTGCAAGCCCGAAAAA
GAGGCGTTTGAAAAGGTCTTGGCGGCGTTGCCTGTGTCTTCGCTGGAGGG
AGAGGGGGAGAAAGGGAGGGAGGTGGTCCTTTTTGAGGACAGCTTCAAAA
ATTTGATGGCGGCAAAGGAGCTAGGGATGAAAACAATTTTGATTTGTAAG
TGCTCGTTTAGGCTGAGAATGGCATGAGGGGAAAGCAAAATGGTGCGTTG
AACTGTTGTATTTATCGATTTCTTACTTATTTTTGTCTCTTACCCCTCCC
TCTACCCTGAACCTGACAGACAGCAAGACGACAGTGAAGGAGGAGGGCCG
GAGCGAGGCGGACTTCCACACGGTGGATGCGGTGCTACCTCGACTGACGT
TGCCAATTGCCCGTAAGAAAGCTTCTTTTTTGTGGGAGGGCTTTGAAAAA
TAAGGTAGAGAAGGGAAGGAAGAATAAGGATAGGGCGAAATCGGTAGTGA
GTTTGAAAAATACGAAGAGGAAATGAAATGAAAGAGAATAAAATGTGAAT
GACACTGTCAATTTTAAAGACATTGTAATT
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Coding sequence (CDS) from alignment at scaffold_1:442157..443686-

>mRNA_1388 ID=mRNA_1388|Name=jgi.p|Nanoce1779_2|571941|organism=Nannochloropsis oceanica|type=CDS|length=3120bp|location=Sequence derived from alignment at scaffold_1:442157..443686- (Nannochloropsis oceanica)
ACAGCAAGACGACAGTGAAGGAGGAGGGCCGGAGCGAGGCGGACTTCCAC
ACGGTGGATGCGGTGCTACCTCGACTGACGTTGCCAATTGCCCGTAAGAA
AGCTTCTTTTTTGTGGGAGGGCTTTGAAAAATAAGCGCCCGCTTTTCAAC
AAATACCACCAGTCTTTCCGTGCTTTCAAAGCGCAAGGCTGGATAGAAGA
CTCTCAGTCCATTCATTACTGGCGGTATATCCGTAAGGACGTCAATCGCT
TCCTCTCCCCTGATGCTGAACTAGATGTGTTTTTAAGTGCCCTACCCAAG
GAATGTCCAAAATACATCTTCACCAATGCGCGGGAAGAGCAGGCCATGGA
GGCGTTGGTCTGTCTAGGAGTTGAAAGGCATTTTGATGGTGTGTATGGCA
GTGACCACATGGGCGATTACTGCAAGCCCGAAAAAGAGGCGTTTGAAAAG
GTCTTGGCGGCGTTGCCTGTGTCTTCGCTGGAGGGAGAGGGGGAGAAAGG
GAGGGAGGTGGTCCTTTTTGAGGACAGCTTCAAAAATTTGATGGCGGCAA
AGGAGCTAGGGATGAAAACAATTTTGATTTGCATCGGCGGCGGCGGCGGA
GGCAGCAATGGTAGCAAAACGAGGCGGCGCCAAGGCTCGCAAGGTCTTTC
TGTTTGACTTGGACGGGACTCTCTACCCGAACGAAAATGGCTACCGTGAC
CACATCCTTAATAACCTGTGGGAGTACATGCACGAACACTTGGGCATCCC
GCGTTCCACCCCGGCGGAGGACGTCTGATGACAGCAAGACGACAGTGAAG
GAGGAGGGCCGGAGCGAGGCGGACTTCCACACGGTGGATGCGGTGCTACC
TCGACTGACGTTGCCAATTGCCCGTAAGAAAGCTTCTTTTTTGTGGGAGG
GCTTTGAAAAATAAGCGCCCGCTTTTCAACAAATACCACCAGTCTTTCCG
TGCTTTCAAAGCGCAAGGCTGGATAGAAGACTCTCAGTCCATTCATTACT
GGCGGTATATCCGTAAGGACGTCAATCGCTTCCTCTCCCCTGATGCTGAA
CTAGATGTGTTTTTAAGTGCCCTACCCAAGGAATGTCCAAAATACATCTT
CACCAATGCGCGGGAAGAGCAGGCCATGGAGGCGTTGGTCTGTCTAGGAG
TTGAAAGGCATTTTGATGGTGTGTATGGCAGTGACCACATGGGCGATTAC
TGCAAGCCCGAAAAAGAGGCGTTTGAAAAGGTCTTGGCGGCGTTGCCTGT
GTCTTCGCTGGAGGGAGAGGGGGAGAAAGGGAGGGAGGTGGTCCTTTTTG
AGGACAGCTTCAAAAATTTGATGGCGGCAAAGGAGCTAGGGATGAAAACA
ATTTTGATTTGCATCGGCGGCGGCGGCGGAGGCAGCAATGGTAGCAAAAC
GAGGCGGCGCCAAGGCTCGCAAGGTCTTTCTGTTTGACTTGGACGGGACT
CTCTACCCGAACGAAAATGGCTACCGTGACCACATCCTTAATAACCTGTG
GGAGTACATGCACGAACACTTGGGCATCCCGCGTTCCACCCCGGCGGAGG
ACGTCTGATGACAGCAAGACGACAGTGAAGGAGGAGGGCCGGAGCGAGGC
GGACTTCCACACGGTGGATGCGGTGCTACCTCGACTGACGTTGCCAATTG
CCCGTAAGAAAGCTTCTTTTTTGTGGGAGGGCTTTGAAAAATAAGCGCCC
GCTTTTCAACAAATACCACCAGTCTTTCCGTGCTTTCAAAGCGCAAGGCT
GGATAGAAGACTCTCAGTCCATTCATTACTGGCGGTATATCCGTAAGGAC
GTCAATCGCTTCCTCTCCCCTGATGCTGAACTAGATGTGTTTTTAAGTGC
CCTACCCAAGGAATGTCCAAAATACATCTTCACCAATGCGCGGGAAGAGC
AGGCCATGGAGGCGTTGGTCTGTCTAGGAGTTGAAAGGCATTTTGATGGT
GTGTATGGCAGTGACCACATGGGCGATTACTGCAAGCCCGAAAAAGAGGC
GTTTGAAAAGGTCTTGGCGGCGTTGCCTGTGTCTTCGCTGGAGGGAGAGG
GGGAGAAAGGGAGGGAGGTGGTCCTTTTTGAGGACAGCTTCAAAAATTTG
ATGGCGGCAAAGGAGCTAGGGATGAAAACAATTTTGATTTGCATCGGCGG
CGGCGGCGGAGGCAGCAATGGTAGCAAAACGAGGCGGCGCCAAGGCTCGC
AAGGTCTTTCTGTTTGACTTGGACGGGACTCTCTACCCGAACGAAAATGG
CTACCGTGACCACATCCTTAATAACCTGTGGGAGTACATGCACGAACACT
TGGGCATCCCGCGTTCCACCCCGGCGGAGGACGTCTGATGACAGCAAGAC
GACAGTGAAGGAGGAGGGCCGGAGCGAGGCGGACTTCCACACGGTGGATG
CGGTGCTACCTCGACTGACGTTGCCAATTGCCCGTAAGAAAGCTTCTTTT
TTGTGGGAGGGCTTTGAAAAATAAGCGCCCGCTTTTCAACAAATACCACC
AGTCTTTCCGTGCTTTCAAAGCGCAAGGCTGGATAGAAGACTCTCAGTCC
ATTCATTACTGGCGGTATATCCGTAAGGACGTCAATCGCTTCCTCTCCCC
TGATGCTGAACTAGATGTGTTTTTAAGTGCCCTACCCAAGGAATGTCCAA
AATACATCTTCACCAATGCGCGGGAAGAGCAGGCCATGGAGGCGTTGGTC
TGTCTAGGAGTTGAAAGGCATTTTGATGGTGTGTATGGCAGTGACCACAT
GGGCGATTACTGCAAGCCCGAAAAAGAGGCGTTTGAAAAGGTCTTGGCGG
CGTTGCCTGTGTCTTCGCTGGAGGGAGAGGGGGAGAAAGGGAGGGAGGTG
GTCCTTTTTGAGGACAGCTTCAAAAATTTGATGGCGGCAAAGGAGCTAGG
GATGAAAACAATTTTGATTTGCATCGGCGGCGGCGGCGGAGGCAGCAATG
GTAGCAAAACGAGGCGGCGCCAAGGCTCGCAAGGTCTTTCTGTTTGACTT
GGACGGGACTCTCTACCCGAACGAAAATGGCTACCGTGACCACATCCTTA
ATAACCTGTGGGAGTACATGCACGAACACTTGGGCATCCCGCGTTCCACC
CCGGCGGAGGACGTCTGATG
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Synonyms
Publications