jgi.p|Nanoce1779_2|571936, mRNA_1387 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571936
Unique NamemRNA_1387
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length737
Alignment locationscaffold_1:440773..441509 -

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Properties
Property NameValue
TranscriptId572022
TrackFilteredModels2
ProteinId571936
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:440773..441509 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571936gene_1387Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571936mRNA_1387-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1387CDS_1387Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1387 ID=mRNA_1387|Name=jgi.p|Nanoce1779_2|571936|organism=Nannochloropsis oceanica|type=mRNA|length=737bp
ACAGCTCAGCATGCAGCGCATCGCCCTTCATTCCTTGCGACGGGTGGCAC
GAGCTCTTCCTCAGCCTACTTCTTCACCTCGCGTCGTCATCTCGAGCCGG
ACCACCACCCTCGCCCTCCTCCTCGCCGCATCCACTGCCAACCCTCTATG
TCACTCTACCGCCGCACACATGATGAGTTCTGTACAAGCTGTCCCAAAAA
TGTTTTCCACAGCCGATCTATGTGACAGCCACGAACCGCAGCTTCAGGTG
GCGGAAGGAAACGCCTTTCGTTCCTATGGACAATGTGCGTCCTTCAGCGG
AAAAATTGTCACCATCAAGTGCTTCGAGAACAACCCCTTAGTCCGCACGA
TTCTGAGTGAGCCAGGAAACGGCAAAGTGTTGGTGGTCGACGGGGGAGGT
TCCTTGCGCCGGGCCTTGTTCGGTGATAACATTGCGGCATTGGCGGTGAA
GAATGGGTGGGCGGGCGTGATCATATACGGGGCGATTCGAGACTCGGCGG
TGGTGGATCGTCTGCCACTGGGGGTCAAGGCGTTGGGAACCAATCCCATC
AAAAGCTCGAAGCAGCATCCGGGGGATAGGGATGTAGTGGTGGCGTTTGC
AGGGGTGACGTTTACTCCGGGTCATTATGTCTACGCGGATCAGGATGGAA
TCGTGGTGTCGGCGACGGCGCTTCATTAGGGGGGAGGAATGAGGGGAGGG
AAGAGGGAAGTAGTGTTGCCGCCTGTCTCTTACATTG
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protein sequence of jgi.p|Nanoce1779_2|571936

>mRNA_1387-protein ID=mRNA_1387-protein|Name=jgi.p|Nanoce1779_2|571936|organism=Nannochloropsis oceanica|type=polypeptide|length=223bp
MQRIALHSLRRVARALPQPTSSPRVVISSRTTTLALLLAASTANPLCHST
AAHMMSSVQAVPKMFSTADLCDSHEPQLQVAEGNAFRSYGQCASFSGKIV
TIKCFENNPLVRTILSEPGNGKVLVVDGGGSLRRALFGDNIAALAVKNGW
AGVIIYGAIRDSAVVDRLPLGVKALGTNPIKSSKQHPGDRDVVVAFAGVT
FTPGHYVYADQDGIVVSATALH*
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mRNA from alignment at scaffold_1:440773..441509-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1387 ID=mRNA_1387|Name=jgi.p|Nanoce1779_2|571936|organism=Nannochloropsis oceanica|type=mRNA|length=737bp|location=Sequence derived from alignment at scaffold_1:440773..441509- (Nannochloropsis oceanica)
ACAGCTCAGCATGCAGCGCATCGCCCTTCATTCCTTGCGACGGGTGGCAC
GAGCTCTTCCTCAGCCTACTTCTTCACCTCGCGTCGTCATCTCGAGCCGG
ACCACCACCCTCGCCCTCCTCCTCGCCGCATCCACTGCCAACCCTCTATG
TCACTCTACCGCCGCACACATGATGAGTTCTGTACAAGCTGTCCCAAAAA
TGTTTTCCACAGCCGATCTATGTGACAGCCACGAACCGCAGCTTCAGGTG
GCGGAAGGAAACGCCTTTCGTTCCTATGGACAATGTGCGTCCTTCAGCGG
AAAAATTGTCACCATCAAGTGCTTCGAGAACAACCCCTTAGTCCGCACGA
TTCTGAGTGAGCCAGGAAACGGCAAAGTGTTGGTGGTCGACGGGGGAGGT
TCCTTGCGCCGGGCCTTGTTCGGTGATAACATTGCGGCATTGGCGGTGAA
GAATGGGTGGGCGGGCGTGATCATATACGGGGCGATTCGAGACTCGGCGG
TGGTGGATCGTCTGCCACTGGGGGTCAAGGCGTTGGGAACCAATCCCATC
AAAAGCTCGAAGCAGCATCCGGGGGATAGGGATGTAGTGGTGGCGTTTGC
AGGGGTGACGTTTACTCCGGGTCATTATGTCTACGCGGATCAGGATGGAA
TCGTGGTGTCGGCGACGGCGCTTCATTAGGGGGGAGGAATGAGGGGAGGG
AAGAGGGAAGTAGTGTTGCCGCCTGTCTCTTACATTG
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Coding sequence (CDS) from alignment at scaffold_1:440773..441509-

>mRNA_1387 ID=mRNA_1387|Name=jgi.p|Nanoce1779_2|571936|organism=Nannochloropsis oceanica|type=CDS|length=669bp|location=Sequence derived from alignment at scaffold_1:440773..441509- (Nannochloropsis oceanica)
ATGCAGCGCATCGCCCTTCATTCCTTGCGACGGGTGGCACGAGCTCTTCC
TCAGCCTACTTCTTCACCTCGCGTCGTCATCTCGAGCCGGACCACCACCC
TCGCCCTCCTCCTCGCCGCATCCACTGCCAACCCTCTATGTCACTCTACC
GCCGCACACATGATGAGTTCTGTACAAGCTGTCCCAAAAATGTTTTCCAC
AGCCGATCTATGTGACAGCCACGAACCGCAGCTTCAGGTGGCGGAAGGAA
ACGCCTTTCGTTCCTATGGACAATGTGCGTCCTTCAGCGGAAAAATTGTC
ACCATCAAGTGCTTCGAGAACAACCCCTTAGTCCGCACGATTCTGAGTGA
GCCAGGAAACGGCAAAGTGTTGGTGGTCGACGGGGGAGGTTCCTTGCGCC
GGGCCTTGTTCGGTGATAACATTGCGGCATTGGCGGTGAAGAATGGGTGG
GCGGGCGTGATCATATACGGGGCGATTCGAGACTCGGCGGTGGTGGATCG
TCTGCCACTGGGGGTCAAGGCGTTGGGAACCAATCCCATCAAAAGCTCGA
AGCAGCATCCGGGGGATAGGGATGTAGTGGTGGCGTTTGCAGGGGTGACG
TTTACTCCGGGTCATTATGTCTACGCGGATCAGGATGGAATCGTGGTGTC
GGCGACGGCGCTTCATTAG
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Synonyms
Publications