jgi.p|Nanoce1779_2|571934, mRNA_1386 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571934
Unique NamemRNA_1386
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1569
Alignment locationscaffold_1:439229..440797 +

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Properties
Property NameValue
TranscriptId572020
TrackFilteredModels2
ProteinId571934
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:439229..440797 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571934gene_1386Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571934mRNA_1386-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1386CDS_1386Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1386 ID=mRNA_1386|Name=jgi.p|Nanoce1779_2|571934|organism=Nannochloropsis oceanica|type=mRNA|length=1569bp
TATGACATTTAAATTTCCATTGCCAATTCCAGGTCGCCTATGTGTATGTA
GTCTTATTAGCACGCACCATGCCTTAAGTTTTCAAACGAGGGCCCCTAAA
GTCTAATGCTAAGAATCATGCCTCAGCCTACCCGGCGATGTCGAGTGACG
ACATATACTGATCGTTATGTGATGTTTTGGACCACAATCCAACAATTGAC
CAATCACATGCCATGGCGCTTGATAATTTTCCCAAACTCGGACCCCATGA
ACTGCTCCACCCACACTCCGCATTTGATTATTTTTCCTCATCCCCAACAC
CGCCTCCCCGAATGCCTGCATGTCTCGCAGCACACGTTGGAATGTCTCTC
TCCACGCCTTTAAATGCTTTGATGTATATGTATTTCTCTAGTTTTCAGTG
AATGATCAGCATGTAGGCCAGTGTCTTGCATTGCTGACGATTCTCATCCC
TGACCCCACTTACGGGCATTTCAAAGAGGTCAGCACACACCCATCAACCC
ATCTCACATCCCACAACCCACACATATGGCCCAGGACACCATGTCAAGGT
TTTTGCCCCCACGCCACTCCTCTCACACACCATCAGATACAGAAAGCACC
CTCACTCATCCTCCCTCCCCACTTCTCACCCTGGAACAGAAAACCTCTCA
ACTTCTATAAAAAAAATGGCTGGCAAAGGAAAGGCTGGCCGTGGTGCCGG
AAAGAAGGGCGTGTCCCGTTCCTCGAAGGCTGGTCTCCAGTTCCCCGTGG
GCCGTATCTCCCGCTTCCTCAAGAAAGGCCGCTACGCTGCTCGCGTGGGG
TCCGGTGCTCCCGTGTACCTTGCCGCCGTCCTCGAATACCTGACGGCCGA
GATCCTCGAGCTGGCCGGTAACGCTGCCCGTGACAACAAGAAGACGCGCA
TTATTCCTCGCCACGTCCAGTTGGCCGTCCGTAACGACGAGGAGCTCAAC
AAGCTGCTCGGTGGCGTGACCATTGCTTCCGGTGGTGTCCTCCCCAACAT
CCACTCCGTCCTCCTCCCTAAGACCAAGGCGAAGAAGGCAACCAAGTAAA
TATCGACGTACAACCCACTTAAAAAAGAGACGCTTGTCCTAGCTGGCAGC
GCCCAATCCACGGTTTTTTTAAAACCGCCCACACTGTCAATTCACTCAAT
ATCCGCTCTTGTACCTGTTTCTTTTGTCGCTTTTCTAGCTCCTCTCCTTA
CAGCCTTCTTCCCCTAGATTTGCTTTGGTGACAGCCTGGAAAGTGTCGAA
GGAAAATGGAGGGGTATGAGGTATGGAAAAGAAATGTGTACGAAGCCAAA
ACTCCGAAGAAAAAACAACAAAAACACACCACTGAGAAAGTATATCGCAA
CAGTTGGGAGAATCATATCCATACACGTCGCCTTGCCAGATGGAGAGGTG
TACACGTCGAAACTCACCCAGTGTGTAACAACTAACCAACAGCGAAAGGG
CAAGTCTTTGTCACTCAAAGTCATATTATTTTCCGACGTTTCGACCCACA
ACGACCATGTCGTGGGACACAAAGTTGGATGGTGCAGGAAGCATCAATGT
AAGAGACAGGCGGCAACAC
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protein sequence of jgi.p|Nanoce1779_2|571934

>mRNA_1386-protein ID=mRNA_1386-protein|Name=jgi.p|Nanoce1779_2|571934|organism=Nannochloropsis oceanica|type=polypeptide|length=128bp
MAGKGKAGRGAGKKGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPV
YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGG
VTIASGGVLPNIHSVLLPKTKAKKATK*
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mRNA from alignment at scaffold_1:439229..440797+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1386 ID=mRNA_1386|Name=jgi.p|Nanoce1779_2|571934|organism=Nannochloropsis oceanica|type=mRNA|length=1569bp|location=Sequence derived from alignment at scaffold_1:439229..440797+ (Nannochloropsis oceanica)
TATGACATTTAAATTTCCATTGCCAATTCCAGGTCGCCTATGTGTATGTA
GTCTTATTAGCACGCACCATGCCTTAAGTTTTCAAACGAGGGCCCCTAAA
GTCTAATGCTAAGAATCATGCCTCAGCCTACCCGGCGATGTCGAGTGACG
ACATATACTGATCGTTATGTGATGTTTTGGACCACAATCCAACAATTGAC
CAATCACATGCCATGGCGCTTGATAATTTTCCCAAACTCGGACCCCATGA
ACTGCTCCACCCACACTCCGCATTTGATTATTTTTCCTCATCCCCAACAC
CGCCTCCCCGAATGCCTGCATGTCTCGCAGCACACGTTGGAATGTCTCTC
TCCACGCCTTTAAATGCTTTGATGTATATGTATTTCTCTAGTTTTCAGTG
AATGATCAGCATGTAGGCCAGTGTCTTGCATTGCTGACGATTCTCATCCC
TGACCCCACTTACGGGCATTTCAAAGAGGTCAGCACACACCCATCAACCC
ATCTCACATCCCACAACCCACACATATGGCCCAGGACACCATGTCAAGGT
TTTTGCCCCCACGCCACTCCTCTCACACACCATCAGATACAGAAAGCACC
CTCACTCATCCTCCCTCCCCACTTCTCACCCTGGAACAGAAAACCTCTCA
ACTTCTATAAAAAAAATGGCTGGCAAAGGAAAGGCTGGCCGTGGTGCCGG
AAAGAAGGGCGTGTCCCGTTCCTCGAAGGCTGGTCTCCAGTTCCCCGTGG
GCCGTATCTCCCGCTTCCTCAAGAAAGGCCGCTACGCTGCTCGCGTGGGG
TCCGGTGCTCCCGTGTACCTTGCCGCCGTCCTCGAATACCTGACGGCCGA
GATCCTCGAGCTGGCCGGTAACGCTGCCCGTGACAACAAGAAGACGCGCA
TTATTCCTCGCCACGTCCAGTTGGCCGTCCGTAACGACGAGGAGCTCAAC
AAGCTGCTCGGTGGCGTGACCATTGCTTCCGGTGGTGTCCTCCCCAACAT
CCACTCCGTCCTCCTCCCTAAGACCAAGGCGAAGAAGGCAACCAAGTAAA
TATCGACGTACAACCCACTTAAAAAAGAGACGCTTGTCCTAGCTGGCAGC
GCCCAATCCACGGTTTTTTTAAAACCGCCCACACTGTCAATTCACTCAAT
ATCCGCTCTTGTACCTGTTTCTTTTGTCGCTTTTCTAGCTCCTCTCCTTA
CAGCCTTCTTCCCCTAGATTTGCTTTGGTGACAGCCTGGAAAGTGTCGAA
GGAAAATGGAGGGGTATGAGGTATGGAAAAGAAATGTGTACGAAGCCAAA
ACTCCGAAGAAAAAACAACAAAAACACACCACTGAGAAAGTATATCGCAA
CAGTTGGGAGAATCATATCCATACACGTCGCCTTGCCAGATGGAGAGGTG
TACACGTCGAAACTCACCCAGTGTGTAACAACTAACCAACAGCGAAAGGG
CAAGTCTTTGTCACTCAAAGTCATATTATTTTCCGACGTTTCGACCCACA
ACGACCATGTCGTGGGACACAAAGTTGGATGGTGCAGGAAGCATCAATGT
AAGAGACAGGCGGCAACAC
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Coding sequence (CDS) from alignment at scaffold_1:439229..440797+

>mRNA_1386 ID=mRNA_1386|Name=jgi.p|Nanoce1779_2|571934|organism=Nannochloropsis oceanica|type=CDS|length=384bp|location=Sequence derived from alignment at scaffold_1:439229..440797+ (Nannochloropsis oceanica)
ATGGCTGGCAAAGGAAAGGCTGGCCGTGGTGCCGGAAAGAAGGGCGTGTC
CCGTTCCTCGAAGGCTGGTCTCCAGTTCCCCGTGGGCCGTATCTCCCGCT
TCCTCAAGAAAGGCCGCTACGCTGCTCGCGTGGGGTCCGGTGCTCCCGTG
TACCTTGCCGCCGTCCTCGAATACCTGACGGCCGAGATCCTCGAGCTGGC
CGGTAACGCTGCCCGTGACAACAAGAAGACGCGCATTATTCCTCGCCACG
TCCAGTTGGCCGTCCGTAACGACGAGGAGCTCAACAAGCTGCTCGGTGGC
GTGACCATTGCTTCCGGTGGTGTCCTCCCCAACATCCACTCCGTCCTCCT
CCCTAAGACCAAGGCGAAGAAGGCAACCAAGTAA
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Synonyms
Publications