jgi.p|Nanoce1779_2|571928, mRNA_1382 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|571928
Unique Name	mRNA_1382
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2206
Alignment location	scaffold_1:432516..434721 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	572014
Track	FilteredModels2
ProteinId	571928

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:432516..434721 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|571928	gene_1382	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|571928	mRNA_1382-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1382	CDS_1382	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:432516..434721+
coding sequence from alignment at scaffold_1:432516..434721+

mRNA sequence

>mRNA_1382 ID=mRNA_1382|Name=jgi.p|Nanoce1779_2|571928|organism=Nannochloropsis oceanica|type=mRNA|length=2206bp
CACCTCAATCAATCATGTCTGGACGCGGCAAAGGCGGCAAGGGTCTCGGC
AAGGGCGGCGCTAAGCGTCACCGCAAAGTCCTGCGCGACAACATCCAGGG
CATTACCAAGCCCGCCATCCGCCGTTTGGCTCGCCGAGGCGGTGTAAAGC
GTATCTCGGGCCTCATCTACGAGGAGACCCGCGGTGTGCTTAAGGTCTTC
CTCGAGAACGTCATCCGTGACTCCGTCACCTACACAGAGCACGCCCGCCG
CAAGACCGTCACGGCCCTCGACGTCGTGTACGCGCTCAAGCGACAGGGCC
GCACCCTGTACGGTTTCGGTGGCTAAGCACCAGCACCGTTATGATAAGCA
ACAACAAAAAGGGTTTTTTCAAACCCCTCTTCTCACTCACATCAGAACCT
GACCTTGTTTGTCGATGTCTTGCTTGGGTTAGCTTTTTGCTTTCTGACCG
GCCGTCTTTTCCTTAGCTACTGCATGCATGATGCTGTGAACAACATTCCG
GGTGTTGTGTTGACTACATATATAAATAATCAGTGACCACAACCAAAGAG
ACATACAGATGTGGAGTGTCGCGAAAGAACAAGTCAGTATCAATCCCCTC
CTTTTTCACGCCTCAGTCGAATTTTTGATTTTGTTGGTCTGGTCCTACTG
TCTTACTTGCTCTGTCTTACGTGGTACGTGAAGAAACACGTGCATGCTCT
TCATCCCCACACGCGACCTCATGAGCACCTACAACATAGCTGCTTCTGAC
GCCGGTGACCGTCTCACCAACTACTCCCCTCCCTCGCCCACAGACTCTCC
TTTTGTCGTTACTTCATCTCTCCTTTCTTCCCCTTCTTCCCCTCCTTCCT
TGCCTTCTTCCCTTGTCCAGCAACCCCGGCACCACGCTTCGTCGTTGCGG
TCCCATGGGCCGCTTCGATCTTCCGGCGTTTGGCCATTAGGGCATCCACC
TTGTCTTTCTGCTTCGCCTCTCCTCGTCTTGCCACCTGGTAAGCCCGTTG
GTGCTTGCGGGGCATCATGATCTCGGCAAAGGCTTTCTCCTCATCTTCCT
CCGCCTCCCCGCCCTTTTTGCCCTGTTTTGGGGTGGTAGATAACGACAGG
AGAAAGTTTTCAGGTGACTTATGGTGAGTGCATCTTGAGTAATTCACCAA
TTTCACCAGAATTCAGCCTCTTAACGTACATTTAATATTTGGAACCAACC
TAAATTCTCCCCTCCTCATCCTTCCCTCCTTCCTCCCTCCCTCTCTCCCT
CCCGCCCTCTCTCCTATCACCGTATCAAGTCAACCTTCCCACTCAAAATG
TAGGCAATGCATCCCAACCACTCGTCGTGCGCACGGAAATCCGTCAACGA
AACGACCAAACCGTAGGTGCACCCGCCCCCCCGAAAGACAGGAAAAGAGG
TCCATGTTTCAAATAACAAGATGCATGAAACACGTTCAACCCTTTTCCCC
GGGGCTGACTCTCCCACCCAACGGTCAACAGAACGCACGCATTGACACGC
CTGTCCTCCCATAATTTCCCCGCCGGTGCCTCACGGCGCCGGCGGAGAAG
GAGGGTGGCCTTGCCTTTCGTGCCTTCCCCCTTTTGGAGTGGTTTGGCTT
CTCGCTGGAAGGTTTTTGTCTCTACCTCTTATGTGCGCAAATGCTTCATC
GTCCCGCATCTTTATTCTTCTCTCTATCTTCCTTTGTCCTTGTCATTCAT
GCGAAGATGCTCTCTTAAGATCATGAGAAAGAAGGCGTTCTAAAATGCAC
ACGTCCCTCCCCTGCCTCTCACCCTCCTCCCTCCACATCACTCACCTTCC
TCTTCTTTGAACCCTGCACTGAATCCTCCTCCTCCTCCTCCTCCTCCTCA
TCCTCCTCCTCATCCTCCTCTTCTCCCTCGCTGATCTCTTCCTCCGCCTT
TTCATTTCCTCCCTCCCCCTCCCCCTCAGCCGCGGCAGCCACAGTCGCAG
CAGCTTTCCCTCTGAGCAGATCGAGCTGCTCCCGGTAGGCGGGGATATAG
CCCTCTTTCTCATCGTCCACAAAGGGGGAGAGATGCGGCTGAAGAAATGG
AAGGGTGGGGAGAGCGGAAGGAGAGGGAGAGAGAACGGTCAGTATCTTGA
GAAATATCACAAGGCGCAATGTCTAAGTGAGAGAACGAGAGAACGAGGAG
AAGCAGGCACCAATCCTTTTTCCATCCCTCTATTTCACTCCTCCCCTTCC
CTCCCT

protein sequence of jgi.p|Nanoce1779_2|571928

>mRNA_1382-protein ID=mRNA_1382-protein|Name=jgi.p|Nanoce1779_2|571928|organism=Nannochloropsis oceanica|type=polypeptide|length=104bp
MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGL
IYEETRGVLKVFLENVIRDSVTYTEHARRKTVTALDVVYALKRQGRTLYG
FGG*

mRNA from alignment at scaffold_1:432516..434721+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1382 ID=mRNA_1382|Name=jgi.p|Nanoce1779_2|571928|organism=Nannochloropsis oceanica|type=mRNA|length=2206bp|location=Sequence derived from alignment at scaffold_1:432516..434721+ (Nannochloropsis oceanica)
CACCTCAATCAATCATGTCTGGACGCGGCAAAGGCGGCAAGGGTCTCGGC
AAGGGCGGCGCTAAGCGTCACCGCAAAGTCCTGCGCGACAACATCCAGGG
CATTACCAAGCCCGCCATCCGCCGTTTGGCTCGCCGAGGCGGTGTAAAGC
GTATCTCGGGCCTCATCTACGAGGAGACCCGCGGTGTGCTTAAGGTCTTC
CTCGAGAACGTCATCCGTGACTCCGTCACCTACACAGAGCACGCCCGCCG
CAAGACCGTCACGGCCCTCGACGTCGTGTACGCGCTCAAGCGACAGGGCC
GCACCCTGTACGGTTTCGGTGGCTAAGCACCAGCACCGTTATGATAAGCA
ACAACAAAAAGGGTTTTTTCAAACCCCTCTTCTCACTCACATCAGAACCT
GACCTTGTTTGTCGATGTCTTGCTTGGGTTAGCTTTTTGCTTTCTGACCG
GCCGTCTTTTCCTTAGCTACTGCATGCATGATGCTGTGAACAACATTCCG
GGTGTTGTGTTGACTACATATATAAATAATCAGTGACCACAACCAAAGAG
ACATACAGATGTGGAGTGTCGCGAAAGAACAAGTCAGTATCAATCCCCTC
CTTTTTCACGCCTCAGTCGAATTTTTGATTTTGTTGGTCTGGTCCTACTG
TCTTACTTGCTCTGTCTTACGTGGTACGTGAAGAAACACGTGCATGCTCT
TCATCCCCACACGCGACCTCATGAGCACCTACAACATAGCTGCTTCTGAC
GCCGGTGACCGTCTCACCAACTACTCCCCTCCCTCGCCCACAGACTCTCC
TTTTGTCGTTACTTCATCTCTCCTTTCTTCCCCTTCTTCCCCTCCTTCCT
TGCCTTCTTCCCTTGTCCAGCAACCCCGGCACCACGCTTCGTCGTTGCGG
TCCCATGGGCCGCTTCGATCTTCCGGCGTTTGGCCATTAGGGCATCCACC
TTGTCTTTCTGCTTCGCCTCTCCTCGTCTTGCCACCTGGTAAGCCCGTTG
GTGCTTGCGGGGCATCATGATCTCGGCAAAGGCTTTCTCCTCATCTTCCT
CCGCCTCCCCGCCCTTTTTGCCCTGTTTTGGGGTGGTAGATAACGACAGG
AGAAAGTTTTCAGGTGACTTATGGTGAGTGCATCTTGAGTAATTCACCAA
TTTCACCAGAATTCAGCCTCTTAACGTACATTTAATATTTGGAACCAACC
TAAATTCTCCCCTCCTCATCCTTCCCTCCTTCCTCCCTCCCTCTCTCCCT
CCCGCCCTCTCTCCTATCACCGTATCAAGTCAACCTTCCCACTCAAAATG
TAGGCAATGCATCCCAACCACTCGTCGTGCGCACGGAAATCCGTCAACGA
AACGACCAAACCGTAGGTGCACCCGCCCCCCCGAAAGACAGGAAAAGAGG
TCCATGTTTCAAATAACAAGATGCATGAAACACGTTCAACCCTTTTCCCC
GGGGCTGACTCTCCCACCCAACGGTCAACAGAACGCACGCATTGACACGC
CTGTCCTCCCATAATTTCCCCGCCGGTGCCTCACGGCGCCGGCGGAGAAG
GAGGGTGGCCTTGCCTTTCGTGCCTTCCCCCTTTTGGAGTGGTTTGGCTT
CTCGCTGGAAGGTTTTTGTCTCTACCTCTTATGTGCGCAAATGCTTCATC
GTCCCGCATCTTTATTCTTCTCTCTATCTTCCTTTGTCCTTGTCATTCAT
GCGAAGATGCTCTCTTAAGATCATGAGAAAGAAGGCGTTCTAAAATGCAC
ACGTCCCTCCCCTGCCTCTCACCCTCCTCCCTCCACATCACTCACCTTCC
TCTTCTTTGAACCCTGCACTGAATCCTCCTCCTCCTCCTCCTCCTCCTCA
TCCTCCTCCTCATCCTCCTCTTCTCCCTCGCTGATCTCTTCCTCCGCCTT
TTCATTTCCTCCCTCCCCCTCCCCCTCAGCCGCGGCAGCCACAGTCGCAG
CAGCTTTCCCTCTGAGCAGATCGAGCTGCTCCCGGTAGGCGGGGATATAG
CCCTCTTTCTCATCGTCCACAAAGGGGGAGAGATGCGGCTGAAGAAATGG
AAGGGTGGGGAGAGCGGAAGGAGAGGGAGAGAGAACGGTCAGTATCTTGA
GAAATATCACAAGGCGCAATGTCTAAGTGAGAGAACGAGAGAACGAGGAG
AAGCAGGCACCAATCCTTTTTCCATCCCTCTATTTCACTCCTCCCCTTCC
CTCCCT

Coding sequence (CDS) from alignment at scaffold_1:432516..434721+

>mRNA_1382 ID=mRNA_1382|Name=jgi.p|Nanoce1779_2|571928|organism=Nannochloropsis oceanica|type=CDS|length=312bp|location=Sequence derived from alignment at scaffold_1:432516..434721+ (Nannochloropsis oceanica)
ATGTCTGGACGCGGCAAAGGCGGCAAGGGTCTCGGCAAGGGCGGCGCTAA
GCGTCACCGCAAAGTCCTGCGCGACAACATCCAGGGCATTACCAAGCCCG
CCATCCGCCGTTTGGCTCGCCGAGGCGGTGTAAAGCGTATCTCGGGCCTC
ATCTACGAGGAGACCCGCGGTGTGCTTAAGGTCTTCCTCGAGAACGTCAT
CCGTGACTCCGTCACCTACACAGAGCACGCCCGCCGCAAGACCGTCACGG
CCCTCGACGTCGTGTACGCGCTCAAGCGACAGGGCCGCACCCTGTACGGT
TTCGGTGGCTAA

Synonyms

Publications