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Properties
| Property Name | Value |
|---|
| TranscriptId | 572010 |
| Track | FilteredModels2 |
| ProteinId | 571924 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_1 | supercontig | scaffold_1:428182..431555 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1381 ID=mRNA_1381|Name=jgi.p|Nanoce1779_2|571924|organism=Nannochloropsis oceanica|type=mRNA|length=1856bp
AGCGACACCATGTCCAAGCCCTCCAATTACGACCTCATCAAGGAGGCCAT
CCTTGCCCTCAAGGAACGCAGCGGCTCTTCTCCCGCAGCCATTAAGGCCT
ACCTGGCCAAGCAGCACCCGACCATCACAATTGACCACCGCTTCCTAGCT
GCTCTTAAGTCCGGCGTCGCGGCCGGCAAGCTGATCAAGGTCAAGGCCTC
GTACAAGCTCAGCGACGCGGCGAAGAAGGTCAAGAAGGCCGTTAAGAAGG
TCGCCAAGAAGACGGTACCCAAGAAGAAGACGGCCGCCAAGAAGAGCAAG
CCCGCTGCCAAAAAGACTGCCCCGAAGAAGACGGCCGCCAAGAAGAGCAA
GCCCGCTGCCAAGAAAACCGCTCCCAAGAAGGTGGCTGCCAAGAAGACTG
TCCCTAAAAAGGTGGCTGTCAAGAAGACCGCCTCTAAGAAGGTGGCTGTC
AAGCCCAAGGCCGCTGCCTCTAAGGTCTCCAAGAAACCTGCGGCCAAGAA
ACCTGCTCCCAAGAAGAGCGCGGCCAAGAAAGCGAAAAAGTAAACAACAA
ATCGAGAACCGCTTCTATTGCTGTCATCACACCCTGTCTGTCACCACCAC
GCTCGTCACCTTTACCTCATCGTCATTGACGAACATGCCATCATCTGCCA
TTCCGTCGTCACTCCTCATCACCACTCTTCATTTCGAAAGCTGCGCCTCG
CGGGGTCTTTGTGTTCCGTCCACTTGACTTTCCTCGTCATCACCACGCAC
ATACTTCACACTTGCACACGGCCATTCATCAAGCCTTCACGTGTATGTCA
TCAACGTCATCATCCATCCACATGTCACTCGTCACGTCAGCAGCACGCAC
GCAGCCCGCTCGTCACCACACACACACTCACACGCACACACACACACAAG
ACCCCTTCCACCCGGCATATACACCCACACCCACACGAACGTCGGCTTCA
CGCCATCTTCTCTTATCATCACACCCATCCGCCGGTGCTCGTTTCCATCT
TCGTCACCTTCACCGCCATTCGTTACCATCCGAGCCACTACACGCCGCCT
CCACGCACACGCGCACGCAATTATCCATTGTACGCGTACGGACACCCGCC
AACCTCCTTCCATCATTCGCTCATCACCGTCATCCAGTATCCACGCTCAG
TCTTTCCGCGAGCCTCACAATCAACACCACCACCACCACCTACCACCCAA
GCCCCTTAACGCACCACGACTGACCCAATATGGCCTTGCCCGTTGCCATC
AGCAAGCGTGTGGCATAAATGAAACGCTGGCAAAACGACTGCACCAACAG
GGTTCTCATTCGAACCCCCTCCTCCAGCACGCCTTCAATGCACCTGCCTC
TCTTGATCATGCTTCTATCTCCCAGTTGCCCACTCTTTTCCTTGCATTGC
TTTTCTCTTGGTTGCACATCTGCCGTGTTCAGTCTGTCCCCCCCCCCCCC
GGCCCCTTCTGTACTTGTTCTCGGCGTCATCCTCTTACTTCTTCCCTTTT
GGACTCTAAATAGGAGTCCTGCCCAAAGGTATGAGTGCTTCTAGTCGGAG
GGGGAAAAAAAAGCAACACGGGCCCCTGCTGCACTTCCCTCTCCACATGT
ACCCTTCGCACATGATTGCCTTTTCCCAATGGCCCTCGCGTCGCATATCG
TTTGATTTACTTTGTTTTTGTCCCAAACTGACATGAATTTACTCACCTCA
CCCTCAATTACTGGTTTGAATGCACTGTCTTCATCCGCCCTCCTTAAACT
TCTTCCATCTTAAAGAAGAATTTCCCTTAAATCGACAGGCTTTCCTTTTC
ACTAAAATACCTCTTCTTCTCCAAGTCCCGCCTTCTCGTTCCCCCTGTTC
CCCTCC back to topprotein sequence of jgi.p|Nanoce1779_2|571924 >mRNA_1381-protein ID=mRNA_1381-protein|Name=jgi.p|Nanoce1779_2|571924|organism=Nannochloropsis oceanica|type=polypeptide|length=178bp
MSKPSNYDLIKEAILALKERSGSSPAAIKAYLAKQHPTITIDHRFLAALK
SGVAAGKLIKVKASYKLSDAAKKVKKAVKKVAKKTVPKKKTAAKKSKPAA
KKTAPKKTAAKKSKPAAKKTAPKKVAAKKTVPKKVAVKKTASKKVAVKPK
AAASKVSKKPAAKKPAPKKSAAKKAKK* back to topmRNA from alignment at scaffold_1:428182..431555- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1381 ID=mRNA_1381|Name=jgi.p|Nanoce1779_2|571924|organism=Nannochloropsis oceanica|type=mRNA|length=3374bp|location=Sequence derived from alignment at scaffold_1:428182..431555- (Nannochloropsis oceanica)
AGCGACACCATGTCCAAGCCCTCCAATTACGACCTCATCAAGGAGGCCAT
CCTTGCCCTCAAGGAACGCAGCGGCTCTTCTCCCGCAGCCATTAAGGCCT
ACCTGGCCAAGCAGCACCCGACCATCACAATTGACCACCGCTTCCTAGCT
GCTCTTAAGTCCGGCGTCGCGGCCGGCAAGCTGATCAAGGTGAGGAGAAG
GGTGGAACGCATAAGGTTCTCATTGGAGTGGGCAGGAAGAGAACGAGCGA
GGAACTTTATGAGATCCTGGACGAGGACGAGGGAGGGCTCCTTTGTGTCT
GGGGTTGCTTATTCATCTATGTGGTTGCTTTCAGGCATAATTTGAATCCT
CGGTGACTTCTATTTGCTGGTGAGTTGGCATTGATGGTCGTTCACTCACC
CTCGCCCACTCTCCCTCCCTCAGGTCAAGGCCTCGTACAAGCTCAGCGAC
GCGGCGAAGAAGGTCAAGAAGGCCGTTAAGAAGGTCGCCAAGAAGACGGG
TAGGTGCTTGTACTTGTCTCGAACTGTATTTCATGCCCTCTTGCCCCTAC
TTCCATGGCCGCCTACGATGCGAGGGCGTCCAGACCCCCAGGAACCCGAC
TTGATGTTTTACAGCCCCGAGGACTAAGAGAATTGTGTTGCATGCTTGAC
CCGCCCTCTCTCCCTCCTTCTGACCGGTCCCCCACTCTCTTCCTCCGTCT
TATACAGTACCCAAGAAGAAGACGGCCGCCAAGAAGAGCAAGCCCGCTGC
CAAAAAGACTGGTAGGTTCTTTGCGGTTCCTGCCTCCTACCTCCCTCTCT
TTTTCTTTACCGTTCCCATCCCTCCCTCGCTCTCATTTCCCTCCCCCCCT
CCCTCGCTCTCATTTTCCTCCCCTATCCAGCCCCGAAGAAGACGGCCGCC
AAGAAGAGCAAGCCCGCTGCCAAAAAGACTGGTAGGTTCGTTGCCCCCTC
TACCTCCCTCCCTCCCTCCCTCACCAATGCCATCCTCCGCCCTCCCCTAT
CCAGCCCCGAAGAAGACGGCCGCCAAGAAGAGCAAGCCCGCTGCCAAGAA
AACCGGTAGGTACATCTCACTTTCCTTTTCCCCTACTTCTGGTGTCCCCT
CTCACCTTGCCCACCCTCCACCTCACCTCGCCCTCACCTCATTTCTCAGC
TCCCAAGAAGGTGGCTGCCAAGAAGACTGTCCCTAAAAAGGTGGCTGTCA
AGAAGACCGCCTCTAAGAAGGTGGCTGTCAAGGTGAGTCTCCGTCCTTCC
CGCGCCCCCTTCCATATTTCGGATACCCTTAATGTCATGCACATCTGGAT
CAGCGTTGAACAACGTTTGGTACCTTTGCCATACTGAAGTGCCATCCCTA
AGGTACCAAAAACCGTTCACGGATGATCCAGACATGCATGACGTCGAAAG
CATCCGTTTTCTCCGTCCCCTCCCTGCCGCCCTTCGTCGAGAGGTCGCCA
ATCCAACCACCCCTCCCTCCCTTCCGCTCTCTCCCTATCCCCCACCAGCC
CAAGGCCGCTGCCTCTAAGGTCTCCAAGAAACCTGCGGCCAAGAAACCTG
GTAGGTGTCTTGTCCTCCCTCTCTTCCTCCCTCCCTCCCTTCCTCCCTCT
TTACGCAAGCCTCTATCCCCATCGCCGACGAAGCCGACAAGTTCCGAAAC
CAGCCAAATGTGCCCTCCATCTATGTCTCTCTCCCTCTTTTCCTCACCTC
GCCCTCCCTTCCTCCCACTGCCCATCCACCTACCCTAACGGAGCCCAACT
TGACGTTTTACAGCCCCGATGAGTTTGTTGCATGCGTGACCTGCCCTCCA
TCCTTCTCATCTGTCACCCCCTCCCTCTCTCCGTCTCTCTCCGTCTCCCA
CAGCTCCCAAGAAGAGCGCGGCCAAGAAAGCGAAAAAGTAAACAACAAAT
CGAGAACCGCTTCTATTGCTGTCATCACACCCTGTCTGTCACCACCACGC
TCGTCACCTTTACCTCATCGTCATTGACGAACATGCCATCATCTGCCATT
CCGTCGTCACTCCTCATCACCACTCTTCATTTCGAAAGCTGCGCCTCGCG
GGGTCTTTGTGTTCCGTCCACTTGACTTTCCTCGTCATCACCACGCACAT
ACTTCACACTTGCACACGGTTAGCAGCTTAAGGGGAAGGGGGGGAAGACA
TGGTTTATGGGCTCTTGGAAGCGCTGCAGTCTTTCTCAGCTTCCATGTTC
GTACTCAAATCAACAACGACAGTGTACTCACACTTTCTTCTCTTCTCTCC
TCCACCCATGCACCCACACCCACTACACACATACACAGGCCATTCATCAA
GCCTTCACGTGTATGTCATCAACGTCATCATCCATCCACATGTCACTCGT
CACGTCAGCAGCACGCACGCAGCCCGCTCGTCACCACACACACACTCACA
CGCACACACACACACAAGACCCCTTCCACCCGGCATATACACCCACACCC
ACACGAACGTCGGCTTCACGCCATCTTCTCTTATCATCACACCCATCCGC
CGGTGCTCGTTTCCATCTTCGTCACCTTCACCGCCATTCGTTACCATCCG
AGCCACTACACGCCGCCTCCACGCACACGCGCACGCAATTATCCATTGTA
CGCGTACGGACACCCGCCAACCTCCTTCCATCATTCGCTCATCACCGTCA
TCCAGTATCCACGCTCAGTCTTTCCGCGAGCCTCACAATCAACACCACCA
CCACCACCTACCACCCAAGCCCCTTAACGCACCACGACTGACCCAATATG
GCCTTGCCCGTTGCCATCAGCAAGCGTGTGGCATAAATGAAACGCTGGCA
AAACGACTGCACCAACAGGGTTCTCATTCGAACCCCCTCCTCCAGCACGC
CTTCAATGCACCTGCCTCTCTTGATCATGCTTCTATCTCCCAGTTGCCCA
CTCTTTTCCTTGCATTGCTTTTCTCTTGGTTGCACATCTGCCGTGTTCAG
TCTGTCCCCCCCCCCCCCGGCCCCTTCTGTACTTGTTCTCGGCGTCATCC
TCTTACTTCTTCCCTTTTGGACTCTAAATAGGAGTCCTGCCCAAAGGTAT
GAGTGCTTCTAGTCGGAGGGGGAAAAAAAAGCAACACGGGCCCCTGCTGC
ACTTCCCTCTCCACATGTACCCTTCGCACATGATTGCCTTTTCCCAATGG
CCCTCGCGTCGCATATCGTTTGATTTACTTTGTTTTTGTCCCAAACTGAC
ATGAATTTACTCACCTCACCCTCAATTACTGGTTTGAATGCACTGTCTTC
ATCCGCCCTCCTTAAACTTCTTCCATCTTAAAGAAGAATTTCCCTTAAAT
CGACAGGCTTTCCTTTTCACTAAAATACCTCTTCTTCTCCAAGTCCCGCC
TTCTCGTTCCCCCTGTTCCCCTCC back to topCoding sequence (CDS) from alignment at scaffold_1:428182..431555- >mRNA_1381 ID=mRNA_1381|Name=jgi.p|Nanoce1779_2|571924|organism=Nannochloropsis oceanica|type=CDS|length=3738bp|location=Sequence derived from alignment at scaffold_1:428182..431555- (Nannochloropsis oceanica)
CTCCCAAGAAGAGCGCGGCCAAGAAAGCGAAAAAGTAACCCAAGGCCGCT
GCCTCTAAGGTCTCCAAGAAACCTGCGGCCAAGAAACCTGCTCCCAAGAA
GGTGGCTGCCAAGAAGACTGTCCCTAAAAAGGTGGCTGTCAAGAAGACCG
CCTCTAAGAAGGTGGCTGTCAAGCCCCGAAGAAGACGGCCGCCAAGAAGA
GCAAGCCCGCTGCCAAGAAAACCGTACCCAAGAAGAAGACGGCCGCCAAG
AAGAGCAAGCCCGCTGCCAAAAAGACTGGTCAAGGCCTCGTACAAGCTCA
GCGACGCGGCGAAGAAGGTCAAGAAGGCCGTTAAGAAGGTCGCCAAGAAG
ACGGATGTCCAAGCCCTCCAATTACGACCTCATCAAGGAGGCCATCCTTG
CCCTCAAGGAACGCAGCGGCTCTTCTCCCGCAGCCATTAAGGCCTACCTG
GCCAAGCAGCACCCGACCATCACAATTGACCACCGCTTCCTAGCTGCTCT
TAAGTCCGGCGTCGCGGCCGGCAAGCTGATCAAGCTCCCAAGAAGAGCGC
GGCCAAGAAAGCGAAAAAGTAACCCAAGGCCGCTGCCTCTAAGGTCTCCA
AGAAACCTGCGGCCAAGAAACCTGCTCCCAAGAAGGTGGCTGCCAAGAAG
ACTGTCCCTAAAAAGGTGGCTGTCAAGAAGACCGCCTCTAAGAAGGTGGC
TGTCAAGCCCCGAAGAAGACGGCCGCCAAGAAGAGCAAGCCCGCTGCCAA
GAAAACCGTACCCAAGAAGAAGACGGCCGCCAAGAAGAGCAAGCCCGCTG
CCAAAAAGACTGGTCAAGGCCTCGTACAAGCTCAGCGACGCGGCGAAGAA
GGTCAAGAAGGCCGTTAAGAAGGTCGCCAAGAAGACGGATGTCCAAGCCC
TCCAATTACGACCTCATCAAGGAGGCCATCCTTGCCCTCAAGGAACGCAG
CGGCTCTTCTCCCGCAGCCATTAAGGCCTACCTGGCCAAGCAGCACCCGA
CCATCACAATTGACCACCGCTTCCTAGCTGCTCTTAAGTCCGGCGTCGCG
GCCGGCAAGCTGATCAAGCTCCCAAGAAGAGCGCGGCCAAGAAAGCGAAA
AAGTAACCCAAGGCCGCTGCCTCTAAGGTCTCCAAGAAACCTGCGGCCAA
GAAACCTGCTCCCAAGAAGGTGGCTGCCAAGAAGACTGTCCCTAAAAAGG
TGGCTGTCAAGAAGACCGCCTCTAAGAAGGTGGCTGTCAAGCCCCGAAGA
AGACGGCCGCCAAGAAGAGCAAGCCCGCTGCCAAGAAAACCGTACCCAAG
AAGAAGACGGCCGCCAAGAAGAGCAAGCCCGCTGCCAAAAAGACTGGTCA
AGGCCTCGTACAAGCTCAGCGACGCGGCGAAGAAGGTCAAGAAGGCCGTT
AAGAAGGTCGCCAAGAAGACGGATGTCCAAGCCCTCCAATTACGACCTCA
TCAAGGAGGCCATCCTTGCCCTCAAGGAACGCAGCGGCTCTTCTCCCGCA
GCCATTAAGGCCTACCTGGCCAAGCAGCACCCGACCATCACAATTGACCA
CCGCTTCCTAGCTGCTCTTAAGTCCGGCGTCGCGGCCGGCAAGCTGATCA
AGCTCCCAAGAAGAGCGCGGCCAAGAAAGCGAAAAAGTAACCCAAGGCCG
CTGCCTCTAAGGTCTCCAAGAAACCTGCGGCCAAGAAACCTGCTCCCAAG
AAGGTGGCTGCCAAGAAGACTGTCCCTAAAAAGGTGGCTGTCAAGAAGAC
CGCCTCTAAGAAGGTGGCTGTCAAGCCCCGAAGAAGACGGCCGCCAAGAA
GAGCAAGCCCGCTGCCAAGAAAACCGTACCCAAGAAGAAGACGGCCGCCA
AGAAGAGCAAGCCCGCTGCCAAAAAGACTGGTCAAGGCCTCGTACAAGCT
CAGCGACGCGGCGAAGAAGGTCAAGAAGGCCGTTAAGAAGGTCGCCAAGA
AGACGGATGTCCAAGCCCTCCAATTACGACCTCATCAAGGAGGCCATCCT
TGCCCTCAAGGAACGCAGCGGCTCTTCTCCCGCAGCCATTAAGGCCTACC
TGGCCAAGCAGCACCCGACCATCACAATTGACCACCGCTTCCTAGCTGCT
CTTAAGTCCGGCGTCGCGGCCGGCAAGCTGATCAAGCTCCCAAGAAGAGC
GCGGCCAAGAAAGCGAAAAAGTAACCCAAGGCCGCTGCCTCTAAGGTCTC
CAAGAAACCTGCGGCCAAGAAACCTGCTCCCAAGAAGGTGGCTGCCAAGA
AGACTGTCCCTAAAAAGGTGGCTGTCAAGAAGACCGCCTCTAAGAAGGTG
GCTGTCAAGCCCCGAAGAAGACGGCCGCCAAGAAGAGCAAGCCCGCTGCC
AAGAAAACCGTACCCAAGAAGAAGACGGCCGCCAAGAAGAGCAAGCCCGC
TGCCAAAAAGACTGGTCAAGGCCTCGTACAAGCTCAGCGACGCGGCGAAG
AAGGTCAAGAAGGCCGTTAAGAAGGTCGCCAAGAAGACGGATGTCCAAGC
CCTCCAATTACGACCTCATCAAGGAGGCCATCCTTGCCCTCAAGGAACGC
AGCGGCTCTTCTCCCGCAGCCATTAAGGCCTACCTGGCCAAGCAGCACCC
GACCATCACAATTGACCACCGCTTCCTAGCTGCTCTTAAGTCCGGCGTCG
CGGCCGGCAAGCTGATCAAGCTCCCAAGAAGAGCGCGGCCAAGAAAGCGA
AAAAGTAACCCAAGGCCGCTGCCTCTAAGGTCTCCAAGAAACCTGCGGCC
AAGAAACCTGCTCCCAAGAAGGTGGCTGCCAAGAAGACTGTCCCTAAAAA
GGTGGCTGTCAAGAAGACCGCCTCTAAGAAGGTGGCTGTCAAGCCCCGAA
GAAGACGGCCGCCAAGAAGAGCAAGCCCGCTGCCAAGAAAACCGTACCCA
AGAAGAAGACGGCCGCCAAGAAGAGCAAGCCCGCTGCCAAAAAGACTGGT
CAAGGCCTCGTACAAGCTCAGCGACGCGGCGAAGAAGGTCAAGAAGGCCG
TTAAGAAGGTCGCCAAGAAGACGGATGTCCAAGCCCTCCAATTACGACCT
CATCAAGGAGGCCATCCTTGCCCTCAAGGAACGCAGCGGCTCTTCTCCCG
CAGCCATTAAGGCCTACCTGGCCAAGCAGCACCCGACCATCACAATTGAC
CACCGCTTCCTAGCTGCTCTTAAGTCCGGCGTCGCGGCCGGCAAGCTGAT
CAAGCTCCCAAGAAGAGCGCGGCCAAGAAAGCGAAAAAGTAACCCAAGGC
CGCTGCCTCTAAGGTCTCCAAGAAACCTGCGGCCAAGAAACCTGCTCCCA
AGAAGGTGGCTGCCAAGAAGACTGTCCCTAAAAAGGTGGCTGTCAAGAAG
ACCGCCTCTAAGAAGGTGGCTGTCAAGCCCCGAAGAAGACGGCCGCCAAG
AAGAGCAAGCCCGCTGCCAAGAAAACCGTACCCAAGAAGAAGACGGCCGC
CAAGAAGAGCAAGCCCGCTGCCAAAAAGACTGGTCAAGGCCTCGTACAAG
CTCAGCGACGCGGCGAAGAAGGTCAAGAAGGCCGTTAAGAAGGTCGCCAA
GAAGACGGATGTCCAAGCCCTCCAATTACGACCTCATCAAGGAGGCCATC
CTTGCCCTCAAGGAACGCAGCGGCTCTTCTCCCGCAGCCATTAAGGCCTA
CCTGGCCAAGCAGCACCCGACCATCACAATTGACCACCGCTTCCTAGCTG
CTCTTAAGTCCGGCGTCGCGGCCGGCAAGCTGATCAAG back to top
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