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Properties
| Property Name | Value |
|---|
| TranscriptId | 626812 |
| Track | FilteredModels2 |
| ProteinId | 626726 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_1 | supercontig | scaffold_1:428182..432119 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1380 ID=mRNA_1380|Name=jgi.p|Nanoce1779_2|626726|organism=Nannochloropsis oceanica|type=mRNA|length=3210bp
CTCGGTCTTCAGGTCTTATTCATCATAAAAATTAGCCGTTAAGAATGATC
GCTTTCTTCACTTTATTTTTGGGAGTTTGACTGACCTCTTAGCCCCTTTT
TCGCGCCTCGGGTGGCCCCGATTCCCACCCTCCAATCGCCATAGGCAGAC
TAACCACACATTCACAGCCGTCATTGTCCAAGTTATAATTACGTGGGATG
CTTGGTGTGAATGGCGTGGCATGATGCGCGTGTCTTGGATGAGGGGAGGG
AGGGCCCATAGCAGGGGTCTGTAATTATGTCGTCAGCGGCACCCCCGGCA
CCTCTTCACACTCACTTTTTGCATCCGCACCCTAAGTCACTGGACATCTG
GTCGGGCAGAAATTGATGTGCGATTTGGAATGACTGAAGCTCGTTCTTGT
CATATCTCGACGTCATTGCGCAAATGAGAAGATTTTTGACGCCACCAGAA
GACGTACACCCCCTGTCGTTACCACCTCCTCTCTCCCTCCTCTCGGACAC
GGCGTCTACAATTTCGAGCGTATCTATCTCAAATCCCCTTTCTCTATTTC
CTCCCTCCGATCGAAGCGACACCATGTCCAAGCCCTCCAATTACGACCTC
ATCAAGGAGGCCATCCTTGCCCTCAAGGAACGCAGCGGCTCTTCTCCCGC
AGCCATTAAGGCCTACCTGGCCAAGCAGCACCCGACCATCACAATTGACC
ACCGCTTCCTAGCTGCTCTTAAGTCCGGCGTCGCGGCCGGCAAGCTGATC
AAGGTCAAGGCCTCGTACAAGCTCAGCGACGCGGCGAAGAAGGTCAAGAA
GGCCGTTAAGAAGGTCGCCAAGAAGACGGTACCCAAGAAGAAGACGGCCG
CCAAGAAGAGCAAGCCCGCTGCCAAAAAGACTGCCCCGAAGAAGACGGCC
GCCAAGAAGAGCAAGCCCGCTGCCAAAAAGACTGCCCCGAAGAAGACGGC
CGCCAAGAAGAGCAAGCCCGCTGCCAAGAAAACCGCTCCCAAGAAGGTGG
CTGCCAAGAAGACTGTCCCTAAAAAGGTGGCTGTCAAGAAGACCGCCTCT
AAGAAGGTGGCTGTCAAGGTGAGTCTCCGTCCTTCCCGCGCCCCCTTCCA
TATTTCGGATACCCTTAATGTCATGCACATCTGGATCAGCGTTGAACAAC
GTTTGGTACCTTTGCCATACTGAAGTGCCATCCCTAAGGTACCAAAAACC
GTTCACGGATGATCCAGACATGCATGACGTCGAAAGCATCCGTTTTCTCC
GTCCCCTCCCTGCCGCCCTTCGTCGAGAGGTCGCCAATCCAACCACCCCT
CCCTCCCTTCCGCTCTCTCCCTATCCCCCACCAGCCCAAGGCCGCTGCCT
CTAAGGTCTCCAAGAAACCTGCGGCCAAGAAACCTGGTAGGTGTCTTGTC
CTCCCTCTCTTCCTCCCTCCCTCCCTTCCTCCCTCTTTACGCAAGCCTCT
ATCCCCATCGCCGACGAAGCCGACAAGTTCCGAAACCAGCCAAATGTGCC
CTCCATCTATGTCTCTCTCCCTCTTTTCCTCACCTCGCCCTCCCTTCCTC
CCACTGCCCATCCACCTACCCTAACGGAGCCCAACTTGACGTTTTACAGC
CCCGATGAGTTTGTTGCATGCGTGACCTGCCCTCCATCCTTCTCATCTGT
CACCCCCTCCCTCTCTCCGTCTCTCTCCGTCTCCCACAGCTCCCAAGAAG
AGCGCGGCCAAGAAAGCGAAAAAGTAAACAACAAATCGAGAACCGCTTCT
ATTGCTGTCATCACACCCTGTCTGTCACCACCACGCTCGTCACCTTTACC
TCATCGTCATTGACGAACATGCCATCATCTGCCATTCCGTCGTCACTCCT
CATCACCACTCTTCATTTCGAAAGCTGCGCCTCGCGGGGTCTTTGTGTTC
CGTCCACTTGACTTTCCTCGTCATCACCACGCACATACTTCACACTTGCA
CACGGTTAGCAGCTTAAGGGGAAGGGGGGGAAGACATGGTTTATGGGCTC
TTGGAAGCGCTGCAGTCTTTCTCAGCTTCCATGTTCGTACTCAAATCAAC
AACGACAGTGTACTCACACTTTCTTCTCTTCTCTCCTCCACCCATGCACC
CACACCCACTACACACATACACAGGCCATTCATCAAGCCTTCACGTGTAT
GTCATCAACGTCATCATCCATCCACATGTCACTCGTCACGTCAGCAGCAC
GCACGCAGCCCGCTCGTCACCACACACACACTCACACGCACACACACACA
CAAGACCCCTTCCACCCGGCATATACACCCACACCCACACGAACGTCGGC
TTCACGCCATCTTCTCTTATCATCACACCCATCCGCCGGTGCTCGTTTCC
ATCTTCGTCACCTTCACCGCCATTCGTTACCATCCGAGCCACTACACGCC
GCCTCCACGCACACGCGCACGCAATTATCCATTGTACGCGTACGGACACC
CGCCAACCTCCTTCCATCATTCGCTCATCACCGTCATCCAGTATCCACGC
TCAGTCTTTCCGCGAGCCTCACAATCAACACCACCACCACCACCTACCAC
CCAAGCCCCTTAACGCACCACGACTGACCCAATATGGCCTTGCCCGTTGC
CATCAGCAAGCGTGTGGCATAAATGAAACGCTGGCAAAACGACTGCACCA
ACAGGGTTCTCATTCGAACCCCCTCCTCCAGCACGCCTTCAATGCACCTG
CCTCTCTTGATCATGCTTCTATCTCCCAGTTGCCCACTCTTTTCCTTGCA
TTGCTTTTCTCTTGGTTGCACATCTGCCGTGTTCAGTCTGTCCCCCCCCC
CCCCGGCCCCTTCTGTACTTGTTCTCGGCGTCATCCTCTTACTTCTTCCC
TTTTGGACTCTAAATAGGAGTCCTGCCCAAAGGTATGAGTGCTTCTAGTC
GGAGGGGGAAAAAAAAGCAACACGGGCCCCTGCTGCACTTCCCTCTCCAC
ATGTACCCTTCGCACATGATTGCCTTTTCCCAATGGCCCTCGCGTCGCAT
ATCGTTTGATTTACTTTGTTTTTGTCCCAAACTGACATGAATTTACTCAC
CTCACCCTCAATTACTGGTTTGAATGCACTGTCTTCATCCGCCCTCCTTA
AACTTCTTCCATCTTAAAGAAGAATTTCCCTTAAATCGACAGGCTTTCCT
TTTCACTAAAATACCTCTTCTTCTCCAAGTCCCGCCTTCTCGTTCCCCCT
GTTCCCCTCC back to topprotein sequence of jgi.p|Nanoce1779_2|626726 >mRNA_1380-protein ID=mRNA_1380-protein|Name=jgi.p|Nanoce1779_2|626726|organism=Nannochloropsis oceanica|type=polypeptide|length=294bp
MVYGLLEALQSFSASMFVLKSTTTVYSHFLLFSPPPMHPHPLHTYTGHSS
SLHVYVINVIIHPHVTRHVSSTHAARSSPHTHSHAHTHTRPLPPGIYTHT
HTNVGFTPSSLIITPIRRCSFPSSSPSPPFVTIRATTRRLHAHAHAIIHC
TRTDTRQPPSIIRSSPSSSIHAQSFREPHNQHHHHHLPPKPLNAPRLTQY
GLARCHQQACGINETLAKRLHQQGSHSNPLLQHAFNAPASLDHASISQLP
TLFLALLFSWLHICRVQSVPPPPGPFCTCSRRHPLTSSLLDSK* back to topmRNA from alignment at scaffold_1:428182..432119- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1380 ID=mRNA_1380|Name=jgi.p|Nanoce1779_2|626726|organism=Nannochloropsis oceanica|type=mRNA|length=3938bp|location=Sequence derived from alignment at scaffold_1:428182..432119- (Nannochloropsis oceanica)
CTCGGTCTTCAGGTCTTATTCATCATAAAAATTAGCCGTTAAGAATGATC
GCTTTCTTCACTTTATTTTTGGGAGTTTGACTGACCTCTTAGCCCCTTTT
TCGCGCCTCGGGTGGCCCCGATTCCCACCCTCCAATCGCCATAGGCAGAC
TAACCACACATTCACAGCCGTCATTGTCCAAGTTATAATTACGTGGGATG
CTTGGTGTGAATGGCGTGGCATGATGCGCGTGTCTTGGATGAGGGGAGGG
AGGGCCCATAGCAGGGGTCTGTAATTATGTCGTCAGCGGCACCCCCGGCA
CCTCTTCACACTCACTTTTTGCATCCGCACCCTAAGTCACTGGACATCTG
GTCGGGCAGAAATTGATGTGCGATTTGGAATGACTGAAGCTCGTTCTTGT
CATATCTCGACGTCATTGCGCAAATGAGAAGATTTTTGACGCCACCAGAA
GACGTACACCCCCTGTCGTTACCACCTCCTCTCTCCCTCCTCTCGGACAC
GGCGTCTACAATTTCGAGCGTATCTATCTCAAATCCCCTTTCTCTATTTC
CTCCCTCCGATCGAAGCGACACCATGTCCAAGCCCTCCAATTACGACCTC
ATCAAGGAGGCCATCCTTGCCCTCAAGGAACGCAGCGGCTCTTCTCCCGC
AGCCATTAAGGCCTACCTGGCCAAGCAGCACCCGACCATCACAATTGACC
ACCGCTTCCTAGCTGCTCTTAAGTCCGGCGTCGCGGCCGGCAAGCTGATC
AAGGTGAGGAGAAGGGTGGAACGCATAAGGTTCTCATTGGAGTGGGCAGG
AAGAGAACGAGCGAGGAACTTTATGAGATCCTGGACGAGGACGAGGGAGG
GCTCCTTTGTGTCTGGGGTTGCTTATTCATCTATGTGGTTGCTTTCAGGC
ATAATTTGAATCCTCGGTGACTTCTATTTGCTGGTGAGTTGGCATTGATG
GTCGTTCACTCACCCTCGCCCACTCTCCCTCCCTCAGGTCAAGGCCTCGT
ACAAGCTCAGCGACGCGGCGAAGAAGGTCAAGAAGGCCGTTAAGAAGGTC
GCCAAGAAGACGGGTAGGTGCTTGTACTTGTCTCGAACTGTATTTCATGC
CCTCTTGCCCCTACTTCCATGGCCGCCTACGATGCGAGGGCGTCCAGACC
CCCAGGAACCCGACTTGATGTTTTACAGCCCCGAGGACTAAGAGAATTGT
GTTGCATGCTTGACCCGCCCTCTCTCCCTCCTTCTGACCGGTCCCCCACT
CTCTTCCTCCGTCTTATACAGTACCCAAGAAGAAGACGGCCGCCAAGAAG
AGCAAGCCCGCTGCCAAAAAGACTGGTAGGTTCTTTGCGGTTCCTGCCTC
CTACCTCCCTCTCTTTTTCTTTACCGTTCCCATCCCTCCCTCGCTCTCAT
TTCCCTCCCCCCCTCCCTCGCTCTCATTTTCCTCCCCTATCCAGCCCCGA
AGAAGACGGCCGCCAAGAAGAGCAAGCCCGCTGCCAAAAAGACTGGTAGG
TTCGTTGCCCCCTCTACCTCCCTCCCTCCCTCCCTCACCAATGCCATCCT
CCGCCCTCCCCTATCCAGCCCCGAAGAAGACGGCCGCCAAGAAGAGCAAG
CCCGCTGCCAAGAAAACCGGTAGGTACATCTCACTTTCCTTTTCCCCTAC
TTCTGGTGTCCCCTCTCACCTTGCCCACCCTCCACCTCACCTCGCCCTCA
CCTCATTTCTCAGCTCCCAAGAAGGTGGCTGCCAAGAAGACTGTCCCTAA
AAAGGTGGCTGTCAAGAAGACCGCCTCTAAGAAGGTGGCTGTCAAGGTGA
GTCTCCGTCCTTCCCGCGCCCCCTTCCATATTTCGGATACCCTTAATGTC
ATGCACATCTGGATCAGCGTTGAACAACGTTTGGTACCTTTGCCATACTG
AAGTGCCATCCCTAAGGTACCAAAAACCGTTCACGGATGATCCAGACATG
CATGACGTCGAAAGCATCCGTTTTCTCCGTCCCCTCCCTGCCGCCCTTCG
TCGAGAGGTCGCCAATCCAACCACCCCTCCCTCCCTTCCGCTCTCTCCCT
ATCCCCCACCAGCCCAAGGCCGCTGCCTCTAAGGTCTCCAAGAAACCTGC
GGCCAAGAAACCTGGTAGGTGTCTTGTCCTCCCTCTCTTCCTCCCTCCCT
CCCTTCCTCCCTCTTTACGCAAGCCTCTATCCCCATCGCCGACGAAGCCG
ACAAGTTCCGAAACCAGCCAAATGTGCCCTCCATCTATGTCTCTCTCCCT
CTTTTCCTCACCTCGCCCTCCCTTCCTCCCACTGCCCATCCACCTACCCT
AACGGAGCCCAACTTGACGTTTTACAGCCCCGATGAGTTTGTTGCATGCG
TGACCTGCCCTCCATCCTTCTCATCTGTCACCCCCTCCCTCTCTCCGTCT
CTCTCCGTCTCCCACAGCTCCCAAGAAGAGCGCGGCCAAGAAAGCGAAAA
AGTAAACAACAAATCGAGAACCGCTTCTATTGCTGTCATCACACCCTGTC
TGTCACCACCACGCTCGTCACCTTTACCTCATCGTCATTGACGAACATGC
CATCATCTGCCATTCCGTCGTCACTCCTCATCACCACTCTTCATTTCGAA
AGCTGCGCCTCGCGGGGTCTTTGTGTTCCGTCCACTTGACTTTCCTCGTC
ATCACCACGCACATACTTCACACTTGCACACGGTTAGCAGCTTAAGGGGA
AGGGGGGGAAGACATGGTTTATGGGCTCTTGGAAGCGCTGCAGTCTTTCT
CAGCTTCCATGTTCGTACTCAAATCAACAACGACAGTGTACTCACACTTT
CTTCTCTTCTCTCCTCCACCCATGCACCCACACCCACTACACACATACAC
AGGCCATTCATCAAGCCTTCACGTGTATGTCATCAACGTCATCATCCATC
CACATGTCACTCGTCACGTCAGCAGCACGCACGCAGCCCGCTCGTCACCA
CACACACACTCACACGCACACACACACACAAGACCCCTTCCACCCGGCAT
ATACACCCACACCCACACGAACGTCGGCTTCACGCCATCTTCTCTTATCA
TCACACCCATCCGCCGGTGCTCGTTTCCATCTTCGTCACCTTCACCGCCA
TTCGTTACCATCCGAGCCACTACACGCCGCCTCCACGCACACGCGCACGC
AATTATCCATTGTACGCGTACGGACACCCGCCAACCTCCTTCCATCATTC
GCTCATCACCGTCATCCAGTATCCACGCTCAGTCTTTCCGCGAGCCTCAC
AATCAACACCACCACCACCACCTACCACCCAAGCCCCTTAACGCACCACG
ACTGACCCAATATGGCCTTGCCCGTTGCCATCAGCAAGCGTGTGGCATAA
ATGAAACGCTGGCAAAACGACTGCACCAACAGGGTTCTCATTCGAACCCC
CTCCTCCAGCACGCCTTCAATGCACCTGCCTCTCTTGATCATGCTTCTAT
CTCCCAGTTGCCCACTCTTTTCCTTGCATTGCTTTTCTCTTGGTTGCACA
TCTGCCGTGTTCAGTCTGTCCCCCCCCCCCCCGGCCCCTTCTGTACTTGT
TCTCGGCGTCATCCTCTTACTTCTTCCCTTTTGGACTCTAAATAGGAGTC
CTGCCCAAAGGTATGAGTGCTTCTAGTCGGAGGGGGAAAAAAAAGCAACA
CGGGCCCCTGCTGCACTTCCCTCTCCACATGTACCCTTCGCACATGATTG
CCTTTTCCCAATGGCCCTCGCGTCGCATATCGTTTGATTTACTTTGTTTT
TGTCCCAAACTGACATGAATTTACTCACCTCACCCTCAATTACTGGTTTG
AATGCACTGTCTTCATCCGCCCTCCTTAAACTTCTTCCATCTTAAAGAAG
AATTTCCCTTAAATCGACAGGCTTTCCTTTTCACTAAAATACCTCTTCTT
CTCCAAGTCCCGCCTTCTCGTTCCCCCTGTTCCCCTCC back to topCoding sequence (CDS) from alignment at scaffold_1:428182..432119- >mRNA_1380 ID=mRNA_1380|Name=jgi.p|Nanoce1779_2|626726|organism=Nannochloropsis oceanica|type=CDS|length=882bp|location=Sequence derived from alignment at scaffold_1:428182..432119- (Nannochloropsis oceanica)
ATGGTTTATGGGCTCTTGGAAGCGCTGCAGTCTTTCTCAGCTTCCATGTT
CGTACTCAAATCAACAACGACAGTGTACTCACACTTTCTTCTCTTCTCTC
CTCCACCCATGCACCCACACCCACTACACACATACACAGGCCATTCATCA
AGCCTTCACGTGTATGTCATCAACGTCATCATCCATCCACATGTCACTCG
TCACGTCAGCAGCACGCACGCAGCCCGCTCGTCACCACACACACACTCAC
ACGCACACACACACACAAGACCCCTTCCACCCGGCATATACACCCACACC
CACACGAACGTCGGCTTCACGCCATCTTCTCTTATCATCACACCCATCCG
CCGGTGCTCGTTTCCATCTTCGTCACCTTCACCGCCATTCGTTACCATCC
GAGCCACTACACGCCGCCTCCACGCACACGCGCACGCAATTATCCATTGT
ACGCGTACGGACACCCGCCAACCTCCTTCCATCATTCGCTCATCACCGTC
ATCCAGTATCCACGCTCAGTCTTTCCGCGAGCCTCACAATCAACACCACC
ACCACCACCTACCACCCAAGCCCCTTAACGCACCACGACTGACCCAATAT
GGCCTTGCCCGTTGCCATCAGCAAGCGTGTGGCATAAATGAAACGCTGGC
AAAACGACTGCACCAACAGGGTTCTCATTCGAACCCCCTCCTCCAGCACG
CCTTCAATGCACCTGCCTCTCTTGATCATGCTTCTATCTCCCAGTTGCCC
ACTCTTTTCCTTGCATTGCTTTTCTCTTGGTTGCACATCTGCCGTGTTCA
GTCTGTCCCCCCCCCCCCCGGCCCCTTCTGTACTTGTTCTCGGCGTCATC
CTCTTACTTCTTCCCTTTTGGACTCTAAATAG back to top
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