jgi.p|Nanoce1779_2|571914, mRNA_1378 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571914
Unique NamemRNA_1378
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2036
Alignment locationscaffold_1:422363..424398 -

Link to JBrowse

Properties
Property NameValue
TranscriptId572000
TrackFilteredModels2
ProteinId571914
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:422363..424398 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571914gene_1378Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571914mRNA_1378-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1378CDS_1378Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1378 ID=mRNA_1378|Name=jgi.p|Nanoce1779_2|571914|organism=Nannochloropsis oceanica|type=mRNA|length=2036bp
CAGGAGGCTATCTTCCTGCCTCTGCCGAAGGCGCACACACGCCTTCTCCA
CGCGCCGCTGCCTTTCTTCGTCACAGGCACACGAACAAGGACATCCTACA
CCCCGGGGCACTATGAACATGACCCCCCCACGCCATGTCATGCGACAACT
TCTTCTTGCCCGGCAGGCAGTGTCCTCGGCCTCGGCCATGGGAGCCAGCC
AACAAGGATGCGTGCGCTGCTTTGCCAGCATGGCTCCACCACGCAAGGAC
ACCATTTTTACCACCCCCGCGAGCACAGCTAGCAGCAGCGCTTCAGCGAG
AGCCACCACCCCCTTCTACGATGGACGCGTCACCAGTCCAAGCATGAAGC
GAAGAACTGGCGGCAAGGTCATGCCGGTCCAACCACAACCTTTAGCATCA
TCTTCACCCCTAGAAGCAGCAGCATCAGCAGCAGAGCCTTCTTCTCCCCC
CCTCACTCCTACCCCAGAAGTTATCGTCCATAACAGCGCCAAGTCTGCCA
TTCAAAGTTTCTACCGTCGACAGCTGCCCACCTCCCACTGCGTGCCTTTC
AGCTCAACGGAAGGGCGACGCATGTTTCAAGAGGCCTTGGCCCAGGGAGG
GTTGGAGAGTTATTTTCCTTTGTCGGAGCAATTTAAGACACAGGACGACC
CCGCTTTTTGTGGATTAGGGGCGTTGACGATGGTATTAAATGCTTTGGCG
ATTGACCCGGGAAGGACATGGAAGGGTCCCTGGAGGTGGTTCGATGAGAG
CATGTTGGAGTGTTGTGAACCGTTGGAGGTGGTAAGGGAGAGAGGGATAT
GTATCGGGAAATTGGACTGTCTGGCAAGATGTAACGGTGCAACGACTGTG
TTGAAATATGGGGACTCGACGAGCGTGGAGGAGTTTCGGCGGGATGTGAT
TCGGACGACTGGTGGGAGGAATGCGCACTTACATGAGGGCGAGGCGAGGT
TGTGTTCGGAGGAGGCATGTAATGGAAGCCACCATCATCACGAACAGGAG
CAACACCATGTACAGCAGGGACAAAACGAGCTCCTGATCGTCGGCTACAA
CCGTCAAATTATGGGTCAGACCGGCACAGGACATTTCTCCCCGGTAGGAG
GGTATCATGCAGGGAGGGATATGGCCTTGATCATGGACGTCGCTCGCTTC
AAATACCCTCCTCATTGGGTGTCAGTCCCCCTGCTGTGGGAGGCCATGCA
AACAGCCGATCCTGAAACACAGCGTTCACGGGGATATATGGTCGTGGCCA
AGGGGATGGTGTCAGAGAGTCTGTTGTTCACGATTGATAAGACGAGGTAT
GAGGAATTCGAGGCCTTGGCCTCGTGGATGCGCATGGCGGCGATGAAGCT
GCCGCCGTTGATGGAGGAGGAGATGACGAGGGGGATATATGGTGGAGGTG
TGGAAGGAGAGGCATCTGCGAGAGTGGATCATGATAGATTGTTGCCATTG
TTTTTGGAAAGTTTGCCTGAGAGCATCGCGAGCATGTTTGTGACTATTCA
TGAGTCGTTTTGTCTGAGATATAGTGAGAAGCACCTGCGGTCGATAGATA
CGTTGTTGGGAGGGATTGAGGCACACCCCATTTTTGTAACCATGGGGGAG
CAGCATGAAGAGCATTTAGCCCGATTTCGTTCGGTGGCGGGACGAAGGGA
TGTGGCGGCGGAGGAGGCGTGTTGTGCAGGGAAGGTGGTGAGTGAGCGGC
ATGTGCTCACGATTTTATATATCAGTATGTTGGAGTGGGTGTGTCAGCGA
CAGGGGTGGTCGATTTACCGTTTGTTTTCGGCGCAAACTGTGTATAGCCC
ACCGTTGCAGCTGGAAGTGGCGCAGCTCAAGAGGAAGATTGCCGCCATGG
CTGATGAGGTCGGGCCAGGGAAGTAAAATAGGGAGTGTATGTGCATGCAT
GTATTAGAGGGACAAGGCACATTTTAACCAAGGTGTCAGCGCGAACCATG
GGTTGAAAGTAAAACGAATAGTGTTGTGGACTGACTTGAATGCTGTTTGC
TTCACGTAATTGAGCATTTCTTTTCGAAAGAAGGAC
back to top

protein sequence of jgi.p|Nanoce1779_2|571914

>mRNA_1378-protein ID=mRNA_1378-protein|Name=jgi.p|Nanoce1779_2|571914|organism=Nannochloropsis oceanica|type=polypeptide|length=588bp
MNMTPPRHVMRQLLLARQAVSSASAMGASQQGCVRCFASMAPPRKDTIFT
TPASTASSSASARATTPFYDGRVTSPSMKRRTGGKVMPVQPQPLASSSPL
EAAASAAEPSSPPLTPTPEVIVHNSAKSAIQSFYRRQLPTSHCVPFSSTE
GRRMFQEALAQGGLESYFPLSEQFKTQDDPAFCGLGALTMVLNALAIDPG
RTWKGPWRWFDESMLECCEPLEVVRERGICIGKLDCLARCNGATTVLKYG
DSTSVEEFRRDVIRTTGGRNAHLHEGEARLCSEEACNGSHHHHEQEQHHV
QQGQNELLIVGYNRQIMGQTGTGHFSPVGGYHAGRDMALIMDVARFKYPP
HWVSVPLLWEAMQTADPETQRSRGYMVVAKGMVSESLLFTIDKTRYEEFE
ALASWMRMAAMKLPPLMEEEMTRGIYGGGVEGEASARVDHDRLLPLFLES
LPESIASMFVTIHESFCLRYSEKHLRSIDTLLGGIEAHPIFVTMGEQHEE
HLARFRSVAGRRDVAAEEACCAGKVVSERHVLTILYISMLEWVCQRQGWS
IYRLFSAQTVYSPPLQLEVAQLKRKIAAMADEVGPGK*
back to top

mRNA from alignment at scaffold_1:422363..424398-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1378 ID=mRNA_1378|Name=jgi.p|Nanoce1779_2|571914|organism=Nannochloropsis oceanica|type=mRNA|length=2036bp|location=Sequence derived from alignment at scaffold_1:422363..424398- (Nannochloropsis oceanica)
CAGGAGGCTATCTTCCTGCCTCTGCCGAAGGCGCACACACGCCTTCTCCA
CGCGCCGCTGCCTTTCTTCGTCACAGGCACACGAACAAGGACATCCTACA
CCCCGGGGCACTATGAACATGACCCCCCCACGCCATGTCATGCGACAACT
TCTTCTTGCCCGGCAGGCAGTGTCCTCGGCCTCGGCCATGGGAGCCAGCC
AACAAGGATGCGTGCGCTGCTTTGCCAGCATGGCTCCACCACGCAAGGAC
ACCATTTTTACCACCCCCGCGAGCACAGCTAGCAGCAGCGCTTCAGCGAG
AGCCACCACCCCCTTCTACGATGGACGCGTCACCAGTCCAAGCATGAAGC
GAAGAACTGGCGGCAAGGTCATGCCGGTCCAACCACAACCTTTAGCATCA
TCTTCACCCCTAGAAGCAGCAGCATCAGCAGCAGAGCCTTCTTCTCCCCC
CCTCACTCCTACCCCAGAAGTTATCGTCCATAACAGCGCCAAGTCTGCCA
TTCAAAGTTTCTACCGTCGACAGCTGCCCACCTCCCACTGCGTGCCTTTC
AGCTCAACGGAAGGGCGACGCATGTTTCAAGAGGCCTTGGCCCAGGGAGG
GTTGGAGAGTTATTTTCCTTTGTCGGAGCAATTTAAGACACAGGACGACC
CCGCTTTTTGTGGATTAGGGGCGTTGACGATGGTATTAAATGCTTTGGCG
ATTGACCCGGGAAGGACATGGAAGGGTCCCTGGAGGTGGTTCGATGAGAG
CATGTTGGAGTGTTGTGAACCGTTGGAGGTGGTAAGGGAGAGAGGGATAT
GTATCGGGAAATTGGACTGTCTGGCAAGATGTAACGGTGCAACGACTGTG
TTGAAATATGGGGACTCGACGAGCGTGGAGGAGTTTCGGCGGGATGTGAT
TCGGACGACTGGTGGGAGGAATGCGCACTTACATGAGGGCGAGGCGAGGT
TGTGTTCGGAGGAGGCATGTAATGGAAGCCACCATCATCACGAACAGGAG
CAACACCATGTACAGCAGGGACAAAACGAGCTCCTGATCGTCGGCTACAA
CCGTCAAATTATGGGTCAGACCGGCACAGGACATTTCTCCCCGGTAGGAG
GGTATCATGCAGGGAGGGATATGGCCTTGATCATGGACGTCGCTCGCTTC
AAATACCCTCCTCATTGGGTGTCAGTCCCCCTGCTGTGGGAGGCCATGCA
AACAGCCGATCCTGAAACACAGCGTTCACGGGGATATATGGTCGTGGCCA
AGGGGATGGTGTCAGAGAGTCTGTTGTTCACGATTGATAAGACGAGGTAT
GAGGAATTCGAGGCCTTGGCCTCGTGGATGCGCATGGCGGCGATGAAGCT
GCCGCCGTTGATGGAGGAGGAGATGACGAGGGGGATATATGGTGGAGGTG
TGGAAGGAGAGGCATCTGCGAGAGTGGATCATGATAGATTGTTGCCATTG
TTTTTGGAAAGTTTGCCTGAGAGCATCGCGAGCATGTTTGTGACTATTCA
TGAGTCGTTTTGTCTGAGATATAGTGAGAAGCACCTGCGGTCGATAGATA
CGTTGTTGGGAGGGATTGAGGCACACCCCATTTTTGTAACCATGGGGGAG
CAGCATGAAGAGCATTTAGCCCGATTTCGTTCGGTGGCGGGACGAAGGGA
TGTGGCGGCGGAGGAGGCGTGTTGTGCAGGGAAGGTGGTGAGTGAGCGGC
ATGTGCTCACGATTTTATATATCAGTATGTTGGAGTGGGTGTGTCAGCGA
CAGGGGTGGTCGATTTACCGTTTGTTTTCGGCGCAAACTGTGTATAGCCC
ACCGTTGCAGCTGGAAGTGGCGCAGCTCAAGAGGAAGATTGCCGCCATGG
CTGATGAGGTCGGGCCAGGGAAGTAAAATAGGGAGTGTATGTGCATGCAT
GTATTAGAGGGACAAGGCACATTTTAACCAAGGTGTCAGCGCGAACCATG
GGTTGAAAGTAAAACGAATAGTGTTGTGGACTGACTTGAATGCTGTTTGC
TTCACGTAATTGAGCATTTCTTTTCGAAAGAAGGAC
back to top

Coding sequence (CDS) from alignment at scaffold_1:422363..424398-

>mRNA_1378 ID=mRNA_1378|Name=jgi.p|Nanoce1779_2|571914|organism=Nannochloropsis oceanica|type=CDS|length=1764bp|location=Sequence derived from alignment at scaffold_1:422363..424398- (Nannochloropsis oceanica)
ATGAACATGACCCCCCCACGCCATGTCATGCGACAACTTCTTCTTGCCCG
GCAGGCAGTGTCCTCGGCCTCGGCCATGGGAGCCAGCCAACAAGGATGCG
TGCGCTGCTTTGCCAGCATGGCTCCACCACGCAAGGACACCATTTTTACC
ACCCCCGCGAGCACAGCTAGCAGCAGCGCTTCAGCGAGAGCCACCACCCC
CTTCTACGATGGACGCGTCACCAGTCCAAGCATGAAGCGAAGAACTGGCG
GCAAGGTCATGCCGGTCCAACCACAACCTTTAGCATCATCTTCACCCCTA
GAAGCAGCAGCATCAGCAGCAGAGCCTTCTTCTCCCCCCCTCACTCCTAC
CCCAGAAGTTATCGTCCATAACAGCGCCAAGTCTGCCATTCAAAGTTTCT
ACCGTCGACAGCTGCCCACCTCCCACTGCGTGCCTTTCAGCTCAACGGAA
GGGCGACGCATGTTTCAAGAGGCCTTGGCCCAGGGAGGGTTGGAGAGTTA
TTTTCCTTTGTCGGAGCAATTTAAGACACAGGACGACCCCGCTTTTTGTG
GATTAGGGGCGTTGACGATGGTATTAAATGCTTTGGCGATTGACCCGGGA
AGGACATGGAAGGGTCCCTGGAGGTGGTTCGATGAGAGCATGTTGGAGTG
TTGTGAACCGTTGGAGGTGGTAAGGGAGAGAGGGATATGTATCGGGAAAT
TGGACTGTCTGGCAAGATGTAACGGTGCAACGACTGTGTTGAAATATGGG
GACTCGACGAGCGTGGAGGAGTTTCGGCGGGATGTGATTCGGACGACTGG
TGGGAGGAATGCGCACTTACATGAGGGCGAGGCGAGGTTGTGTTCGGAGG
AGGCATGTAATGGAAGCCACCATCATCACGAACAGGAGCAACACCATGTA
CAGCAGGGACAAAACGAGCTCCTGATCGTCGGCTACAACCGTCAAATTAT
GGGTCAGACCGGCACAGGACATTTCTCCCCGGTAGGAGGGTATCATGCAG
GGAGGGATATGGCCTTGATCATGGACGTCGCTCGCTTCAAATACCCTCCT
CATTGGGTGTCAGTCCCCCTGCTGTGGGAGGCCATGCAAACAGCCGATCC
TGAAACACAGCGTTCACGGGGATATATGGTCGTGGCCAAGGGGATGGTGT
CAGAGAGTCTGTTGTTCACGATTGATAAGACGAGGTATGAGGAATTCGAG
GCCTTGGCCTCGTGGATGCGCATGGCGGCGATGAAGCTGCCGCCGTTGAT
GGAGGAGGAGATGACGAGGGGGATATATGGTGGAGGTGTGGAAGGAGAGG
CATCTGCGAGAGTGGATCATGATAGATTGTTGCCATTGTTTTTGGAAAGT
TTGCCTGAGAGCATCGCGAGCATGTTTGTGACTATTCATGAGTCGTTTTG
TCTGAGATATAGTGAGAAGCACCTGCGGTCGATAGATACGTTGTTGGGAG
GGATTGAGGCACACCCCATTTTTGTAACCATGGGGGAGCAGCATGAAGAG
CATTTAGCCCGATTTCGTTCGGTGGCGGGACGAAGGGATGTGGCGGCGGA
GGAGGCGTGTTGTGCAGGGAAGGTGGTGAGTGAGCGGCATGTGCTCACGA
TTTTATATATCAGTATGTTGGAGTGGGTGTGTCAGCGACAGGGGTGGTCG
ATTTACCGTTTGTTTTCGGCGCAAACTGTGTATAGCCCACCGTTGCAGCT
GGAAGTGGCGCAGCTCAAGAGGAAGATTGCCGCCATGGCTGATGAGGTCG
GGCCAGGGAAGTAA
back to top
Synonyms
Publications