jgi.p|Nanoce1779_2|549033, mRNA_1376 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|549033
Unique Name	mRNA_1376
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1824
Alignment location	scaffold_1:416805..418763 +

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Properties


Property Name	Value
TranscriptId	549119
Track	FilteredModels2
ProteinId	549033

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:416805..418763 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|549033	gene_1376	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|549033	mRNA_1376-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1376	CDS_1376	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:416805..418763+
coding sequence from alignment at scaffold_1:416805..418763+

mRNA sequence

>mRNA_1376 ID=mRNA_1376|Name=jgi.p|Nanoce1779_2|549033|organism=Nannochloropsis oceanica|type=mRNA|length=1824bp
CCCACAAGCAGCGACCCCACTACTTCAAAGCTCCCTGGCGTATTTGATTT
GGATACATGGGCTTCGCTTTTTGCTTCGCTTGATGAAGAGAAGCCTATGG
ATTATTGGATCGAGGACTGGGAGGGCACTATCCCCCCATCCCTGCACGGC
ACTTTCCTCACCGTAGGCCCCGGCAAATACGAGCGAGGCGGCGTCCCTAT
CAAGTGCTGGCTAGAGGGTGATGGTGCTATGACGGCAGTGACTTTCCACG
AGGGGCGCGTGCATGTCAAGGCGAGGTTTGTTGAGACCAAGGCCTACCTG
GAGGAGAAGATCGAAAACTGCTTTTTGTACCGCGGGCAATTTGGGACAAT
GAAAACCGGTCACCGCAATGTTAGACGGTTTGCTTCTAATATAACGATGG
CGAGTGAACGTTTTCGTTTCCCGCCCATCAATGCTTTTGACATGAATTTT
AAAAATCCAAGCAATACCAAGCCCCTCTACTGGGGCAATCGCCTCCTTTC
CACTTTCGAGACCGCCCTCCCCTACGAACTGGACCCGCACACTTTGCAAA
CAAAGGGCGAGTTCACTTTTGGGGGTCTATTGCGATCAGGTGAAGCCATC
ACCTCGGCTGACCCAGTGGTAGATGCGGTGCTGCAGAGAAAAAGCGGACA
TGCCTTCACGGCCCATGCGCGGGTGGATCGAGCGACGAACCGCTTGGTGG
GATGGAGCTGGAAGACTCTTTTGCCGCAAAATTGGGGGTTGGGATTCCTG
TCCCAACTCTTATCAAAGAAGAGGGGGGGCGCTGGCTTGGAGGTGACCTT
TTACGAGTGGAACGAGGAATTTGACACTGCTTTTCCCCCAGTAACCATTC
ATGTACCTGACTGTCCTTCTCCTCCGCATGATTGGATGATAACTCGTAAT
TATTACGTGTGGATGCAGAGTGCTTTCACATTGAATCTCTTGCCGTGTAT
TTTGGGGATGAAGGGTCCCGGGGAATGCATGGTGCCGGTAAAGGGGGAGG
AGGCGCGGTCGGTTGTCCATTTGATTCCTCGTCCGGGAGGGAAGGCGGTG
GGACAGCCACCAATGACCATAGAGGTTGATCCTTACTTTATGACGCATTG
GTCCCATGGACACGATGTGATGGGTAAGCAGGAAGGAGGAGAGGAGGGAA
AGGAAGGAGAGGCGGAGAGGGTGATCGGGTACGCAGCGGGATGGGATAAG
AGTTTGTTTGAGCCGGCAAATAGTGATGGGCACATGTTTGGACATACTTA
CAAGGGGGCGCCTGATTTTTCGCGGTTGCCTTTAATTAGATACTACCGTC
TAGATGTGGATTTAAAAGAGAAGAGGGCGAGTTTTGAGGCAGTGGGACCG
TTGAATCAGACGTTTCTGGACTTCCCAAAGGTCCATCCAAGATATGAGAC
GAGAGGAGAACCCGGGCATGTGTGGGCAATGGCGTGTAATGATCGAGGAA
TGAGTTCTCCGCCACAGGGGTACGTCCATCTTGATTTGAAGACGGGACAA
GTCGATTCTTGGCATGCCCCATCTTGTGCCGCGGCTGCTACTGGGGGGAG
GGAGGGAGGGCAGAAGCAAGAGGAGGAGGAACTGAATTGTTATTGGATGG
GGATTGAGTTTGATGCGTTGACGGGCCGTCGGTCGTTGTGTGTATTTGAC
GCGGCGAGGATTAAAAAGGGTCCTCTGTGTAAACTCCATTTGAAGCATCG
GTTGCCGTGGGGCATTCATAGTGAATGGGTGGAGGGGTTAGAGATTGCAG
AGCCGGACGTCGTGGCGGTGAAGGAGGTGGAGGAGGAGGAGGAGGAGGAG
GGTGGGTTGTTGGAAAAGGCCTAA

protein sequence of jgi.p|Nanoce1779_2|549033

>mRNA_1376-protein ID=mRNA_1376-protein|Name=jgi.p|Nanoce1779_2|549033|organism=Nannochloropsis oceanica|type=polypeptide|length=576bp
MDYWIEDWEGTIPPSLHGTFLTVGPGKYERGGVPIKCWLEGDGAMTAVTF
HEGRVHVKARFVETKAYLEEKIENCFLYRGQFGTMKTGHRNVRRFASNIT
MASERFRFPPINAFDMNFKNPSNTKPLYWGNRLLSTFETALPYELDPHTL
QTKGEFTFGGLLRSGEAITSADPVVDAVLQRKSGHAFTAHARVDRATNRL
VGWSWKTLLPQNWGLGFLSQLLSKKRGGAGLEVTFYEWNEEFDTAFPPVT
IHVPDCPSPPHDWMITRNYYVWMQSAFTLNLLPCILGMKGPGECMVPVKG
EEARSVVHLIPRPGGKAVGQPPMTIEVDPYFMTHWSHGHDVMGKQEGGEE
GKEGEAERVIGYAAGWDKSLFEPANSDGHMFGHTYKGAPDFSRLPLIRYY
RLDVDLKEKRASFEAVGPLNQTFLDFPKVHPRYETRGEPGHVWAMACNDR
GMSSPPQGYVHLDLKTGQVDSWHAPSCAAAATGGREGGQKQEEEELNCYW
MGIEFDALTGRRSLCVFDAARIKKGPLCKLHLKHRLPWGIHSEWVEGLEI
AEPDVVAVKEVEEEEEEEGGLLEKA*

mRNA from alignment at scaffold_1:416805..418763+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1376 ID=mRNA_1376|Name=jgi.p|Nanoce1779_2|549033|organism=Nannochloropsis oceanica|type=mRNA|length=1959bp|location=Sequence derived from alignment at scaffold_1:416805..418763+ (Nannochloropsis oceanica)
CCCACAAGCAGCGACCCCACTACTTCAAAGCTCCCTGGCGTATTTGATTT
GGATACATGGGCTTCGCTTTTTGCTTCGCTTGATGAAGAGAAGCCTATGG
ATTATTGGATCGAGGACTGGGAGGGCACTATCCCCCCATCCCTGCACGGC
ACTTTCCTCACCGTAGGCCCCGGCAAATACGAGCGAGGCGGCGTCCCTAT
CAAGTGCTGGCTAGAGGGTGATGGTGCTATGACGGCAGTGACTTTCCACG
AGGGGCGCGTGCATGTCAAGGCGAGGTTTGTTGAGACCAAGGCCTACCTG
GAGGAGAAGATCGAAAACTGCTTTTTGTACCGCGGGCAATTTGGGACAAT
GAAAACCGGTCACCGCAATGTTAGACGGTTTGCTTCTAATATAACGATGG
CGAGTGAACGTTTTCGTTTCCCGCCCATCAATGCTTTTGACATGAATTTT
AAAAATCCAAGCAATACCAAGCCCCTCTACTGGGGCAATCGCCTCCTTTC
CACTTTCGAGACCGCCCTCCCCTACGAACTGGACCCGCACACTTTGCAAA
CAAAGGGCGAGTTCACTTTTGGGGGTCTATTGCGATCAGGTGAAGCCATC
ACCTCGGCTGACCCAGTGGTAGATGCGGTGCTGCAGAGAAAAAGCGGACA
TGCCTTCACGGCCCATGCGCGGGTGGATCGAGCGACGAACCGCTTGGTGG
GATGGAGCTGGAAGACTCTTTTGCCGCAAAATTGGGGGTTGGGATTCCTG
TCCCAACTCTTATCAAAGAAGAGGGGGGGCGCTGGCTTGGAGGTGACCTT
TTACGAGTGGAACGAGGAATTTGACACTGCTTTTCCCCCAGTAACCATTC
ATGTACCTGACTGTCCTTCTCCTCCGCATGATTGGATGATAACTCGTAAT
TATTACGTGTGGATGCAGAGTGCTTTCACATTGAATCTCTTGCCGTGTAT
TTTGGGGATGAAGGGTCCCGGGGAATGCATGGTGCCGGTAAAGGGGGAGG
AGGCGCGGTCGGTTGTCCATTTGATTCCTCGTCCGGGAGGGAAGGCGGTG
GGACAGCCACCAATGACCATAGAGGTTGATCCTTACTTTATGACGCATTG
GTCCCATGGACACGATGTGATGGGTAAGCAGGAAGGAGGAGAGGAGGGAA
AGGAAGGAGAGGCGGAGAGGGTGATCGGGTACGCAGCGGGATGGGATAAG
AGTTTGTTTGAGCCGGCAAATAGTGATGGGCACATGTTTGGACATACTTA
CAAGGGGGCGCCTGATTTTTCGCGGTTGCCTTTAATTAGATACTACCGTC
TAGATGTGGATTTAAAAGAGAAGAGGGCGAGTTTTGAGGCAGTGGGACCG
TTGAATCAGACGTTTCTGGACTTCCCAAAGGTCCATCCAAGATATGAGAC
GAGAGGAGAACCCGGGCATGTGTGGGCAATGGCGTGTAATGATCGAGGAA
TGAGTTCTCCGCCACAGGGGTACGTCCATCTTGATTTGAAGACGGGACAA
GTCGATTCTTGGCATGCCCCATCTTGTGCCGCGGCTGCTACTGTTGCTGC
AGCTGCTGCTGCCGCTGCTTATGGGGGCGAGAGGCAGGGGAATACAGAAA
TGATTCGGATGGAGGCTGAGGATAAGTCAAAGCATATTGTGGTTGGTGAG
GGGGTTCTTGCGCCTCGCATACTGGAGGGGGGGAGGGAGGGAGGGCAGAA
GCAAGAGGAGGAGGAACTGAATTGTTATTGGATGGGGATTGAGTTTGATG
CGTTGACGGGCCGTCGGTCGTTGTGTGTATTTGACGCGGCGAGGATTAAA
AAGGGTCCTCTGTGTAAACTCCATTTGAAGCATCGGTTGCCGTGGGGCAT
TCATAGTGAATGGGTGGAGGGGTTAGAGATTGCAGAGCCGGACGTCGTGG
CGGTGAAGGAGGTGGAGGAGGAGGAGGAGGAGGAGGGTGGGTTGTTGGAA
AAGGCCTAA

Coding sequence (CDS) from alignment at scaffold_1:416805..418763+

>mRNA_1376 ID=mRNA_1376|Name=jgi.p|Nanoce1779_2|549033|organism=Nannochloropsis oceanica|type=CDS|length=3456bp|location=Sequence derived from alignment at scaffold_1:416805..418763+ (Nannochloropsis oceanica)
ATGGATTATTGGATCGAGGACTGGGAGGGCACTATCCCCCCATCCCTGCA
CGGCACTTTCCTCACCGTAGGCCCCGGCAAATACGAGCGAGGCGGCGTCC
CTATCAAGTGCTGGCTAGAGGGTGATGGTGCTATGACGGCAGTGACTTTC
CACGAGGGGCGCGTGCATGTCAAGGCGAGGTTTGTTGAGACCAAGGCCTA
CCTGGAGGAGAAGATCGAAAACTGCTTTTTGTACCGCGGGCAATTTGGGA
CAATGAAAACCGGTCACCGCAATGTTAGACGGTTTGCTTCTAATATAACG
ATGGCGAGTGAACGTTTTCGTTTCCCGCCCATCAATGCTTTTGACATGAA
TTTTAAAAATCCAAGCAATACCAAGCCCCTCTACTGGGGCAATCGCCTCC
TTTCCACTTTCGAGACCGCCCTCCCCTACGAACTGGACCCGCACACTTTG
CAAACAAAGGGCGAGTTCACTTTTGGGGGTCTATTGCGATCAGGTGAAGC
CATCACCTCGGCTGACCCAGTGGTAGATGCGGTGCTGCAGAGAAAAAGCG
GACATGCCTTCACGGCCCATGCGCGGGTGGATCGAGCGACGAACCGCTTG
GTGGGATGGAGCTGGAAGACTCTTTTGCCGCAAAATTGGGGGTTGGGATT
CCTGTCCCAACTCTTATCAAAGAAGAGGGGGGGCGCTGGCTTGGAGGTGA
CCTTTTACGAGTGGAACGAGGAATTTGACACTGCTTTTCCCCCAGTAACC
ATTCATGTACCTGACTGTCCTTCTCCTCCGCATGATTGGATGATAACTCG
TAATTATTACGTGTGGATGCAGAGTGCTTTCACATTGAATCTCTTGCCGT
GTATTTTGGGGATGAAGGGTCCCGGGGAATGCATGGTGCCGGTAAAGGGG
GAGGAGGCGCGGTCGGTTGTCCATTTGATTCCTCGTCCGGGAGGGAAGGC
GGTGGGACAGCCACCAATGACCATAGAGGTTGATCCTTACTTTATGACGC
ATTGGTCCCATGGACACGATGTGATGGGTAAGCAGGAAGGAGGAGAGGAG
GGAAAGGAAGGAGAGGCGGAGAGGGTGATCGGGTACGCAGCGGGATGGGA
TAAGAGTTTGTTTGAGCCGGCAAATAGTGATGGGCACATGTTTGGACATA
CTTACAAGGGGGCGCCTGATTTTTCGCGGTTGCCTTTAATTAGATACTAC
CGTCTAGATGTGGATTTAAAAGAGAAGAGGGCGAGTTTTGAGGCAGTGGG
ACCGTTGAATCAGACGTTTCTGGACTTCCCAAAGGTCCATCCAAGATATG
AGACGAGAGGAGAACCCGGGCATGTGTGGGCAATGGCGTGTAATGATCGA
GGAATGAGTTCTCCGCCACAGGGGTACGTCCATCTTGATTTGAAGACGGG
ACAAGTCGATTCTTGGCATGCCCCATCTTGTGCCGCGGCTGCTACTGGGG
GGAGGGAGGGAGGGCAGAAGCAAGAGGAGGAGGAACTGAATTGTTATTGG
ATGGGGATTGAGTTTGATGCGTTGACGGGCCGTCGGTCGTTGTGTGTATT
TGACGCGGCGAGGATTAAAAAGGGTCCTCTGTGTAAACTCCATTTGAAGC
ATCGGTTGCCGTGGGGCATTCATAGTGAATGGGTGGAGGGGTTAGAGATT
GCAGAGCCGGACGTCGTGGCGGTGAAGGAGGTGGAGGAGGAGGAGGAGGA
GGAGGGTGGGTTGTTGGAAAAGGCCTAAATGGATTATTGGATCGAGGACT
GGGAGGGCACTATCCCCCCATCCCTGCACGGCACTTTCCTCACCGTAGGC
CCCGGCAAATACGAGCGAGGCGGCGTCCCTATCAAGTGCTGGCTAGAGGG
TGATGGTGCTATGACGGCAGTGACTTTCCACGAGGGGCGCGTGCATGTCA
AGGCGAGGTTTGTTGAGACCAAGGCCTACCTGGAGGAGAAGATCGAAAAC
TGCTTTTTGTACCGCGGGCAATTTGGGACAATGAAAACCGGTCACCGCAA
TGTTAGACGGTTTGCTTCTAATATAACGATGGCGAGTGAACGTTTTCGTT
TCCCGCCCATCAATGCTTTTGACATGAATTTTAAAAATCCAAGCAATACC
AAGCCCCTCTACTGGGGCAATCGCCTCCTTTCCACTTTCGAGACCGCCCT
CCCCTACGAACTGGACCCGCACACTTTGCAAACAAAGGGCGAGTTCACTT
TTGGGGGTCTATTGCGATCAGGTGAAGCCATCACCTCGGCTGACCCAGTG
GTAGATGCGGTGCTGCAGAGAAAAAGCGGACATGCCTTCACGGCCCATGC
GCGGGTGGATCGAGCGACGAACCGCTTGGTGGGATGGAGCTGGAAGACTC
TTTTGCCGCAAAATTGGGGGTTGGGATTCCTGTCCCAACTCTTATCAAAG
AAGAGGGGGGGCGCTGGCTTGGAGGTGACCTTTTACGAGTGGAACGAGGA
ATTTGACACTGCTTTTCCCCCAGTAACCATTCATGTACCTGACTGTCCTT
CTCCTCCGCATGATTGGATGATAACTCGTAATTATTACGTGTGGATGCAG
AGTGCTTTCACATTGAATCTCTTGCCGTGTATTTTGGGGATGAAGGGTCC
CGGGGAATGCATGGTGCCGGTAAAGGGGGAGGAGGCGCGGTCGGTTGTCC
ATTTGATTCCTCGTCCGGGAGGGAAGGCGGTGGGACAGCCACCAATGACC
ATAGAGGTTGATCCTTACTTTATGACGCATTGGTCCCATGGACACGATGT
GATGGGTAAGCAGGAAGGAGGAGAGGAGGGAAAGGAAGGAGAGGCGGAGA
GGGTGATCGGGTACGCAGCGGGATGGGATAAGAGTTTGTTTGAGCCGGCA
AATAGTGATGGGCACATGTTTGGACATACTTACAAGGGGGCGCCTGATTT
TTCGCGGTTGCCTTTAATTAGATACTACCGTCTAGATGTGGATTTAAAAG
AGAAGAGGGCGAGTTTTGAGGCAGTGGGACCGTTGAATCAGACGTTTCTG
GACTTCCCAAAGGTCCATCCAAGATATGAGACGAGAGGAGAACCCGGGCA
TGTGTGGGCAATGGCGTGTAATGATCGAGGAATGAGTTCTCCGCCACAGG
GGTACGTCCATCTTGATTTGAAGACGGGACAAGTCGATTCTTGGCATGCC
CCATCTTGTGCCGCGGCTGCTACTGGGGGGAGGGAGGGAGGGCAGAAGCA
AGAGGAGGAGGAACTGAATTGTTATTGGATGGGGATTGAGTTTGATGCGT
TGACGGGCCGTCGGTCGTTGTGTGTATTTGACGCGGCGAGGATTAAAAAG
GGTCCTCTGTGTAAACTCCATTTGAAGCATCGGTTGCCGTGGGGCATTCA
TAGTGAATGGGTGGAGGGGTTAGAGATTGCAGAGCCGGACGTCGTGGCGG
TGAAGGAGGTGGAGGAGGAGGAGGAGGAGGAGGGTGGGTTGTTGGAAAAG
GCCTAA

Synonyms

Publications