jgi.p|Nanoce1779_2|549031, mRNA_1375 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|549031
Unique Name	mRNA_1375
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1448
Alignment location	scaffold_1:414352..415951 -

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Properties


Property Name	Value
TranscriptId	549117
Track	FilteredModels2
ProteinId	549031

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:414352..415951 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|549031	gene_1375	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|549031	mRNA_1375-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1375	CDS_1375	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:414352..415951-
coding sequence from alignment at scaffold_1:414352..415951-

mRNA sequence

>mRNA_1375 ID=mRNA_1375|Name=jgi.p|Nanoce1779_2|549031|organism=Nannochloropsis oceanica|type=mRNA|length=1448bp
ATGGGAAGTCTCACCGACGATGAGCTCCAAAAGCTCTTCACGTGGGTAGA
TACCATTCCCCTCAGCCGTGCCAAGCGGAACATCAACCGTGATTTCAGCG
ATGGCGTGCTGGCGGCGGAGGTGGTTGCCTACTACTTCCCTCGGCTGGTC
GACGTACATAATTACACGGCTTCCTCTAACACGGCCCGAAAACTGGCAAA
TTGGCGGACTTTGAACACGAAGGTATTAAAGAAATTAAAATATGTTCAAA
CTCCGATTATGTTGGATGATCTGGCCCAAGCCAAAGTAGGGGCAGCGGAG
GTCTTTCTTCATTCCTTGCAGTACAAGCTTGCGAGGTACAAGGCGGAGAA
GAGTAACAGCAACAACAGCAGCAGCAGCACCAACAACAGTAGCAGTGGTA
GCATCATTTACGCCGACGATGATGTACACTATCTACCCAAGATTGGACGG
CTCTCGCCGATAACGGCCTCTCCCCATGGAAGAGGAAGCCCGGGCAGCAG
GTTCGCTCCTGTTACGTCGCCTTCCTCCCCTGCATCCCACCCCTCTCTTG
TTCTTCGCCCGCCTGGGCTTCTGGATCATTTACCTTCTGCTCAAAAGTCC
TCTCCCATTCCCTCCTCGCTCTTCTCCGATGCTCTTCCCCTCTCTGCTGC
TGCTGCTGCTGCTGCCCCTGCTCTAGGGAAGGATGACCTTCGGCAGCAGC
AGCCGGCTCGCGGGCATCTTGGCAGCGTGGAAAACGCTGGGCGACCCCAG
CAGAAAGAGCAGCCGTCGGTGGACGAGGAGATTTTGTTGGAGAAGGAAGA
GACGCTGCAAGAAATGAGGGAGACCTTGAATATCCTCGAACTTAAGGTGG
CCGAGCTCGAGCAGCTCCTCCGCGTCAAGGACTTCAGAATACAAACCCTC
TCCAACGAAGTCAAACGGCTGACCCTTGTCGTAAACAGTAGCAGTGACAT
TAGCAGCAGCAGAAGCAGCAAAAGAAGTAGTAGCAGCAGCACGGAAATTG
CGATGGCAGGGGGAGTGACAGGTGGAGGGAGTTTGTTGTGAGGAGGAAGA
GTAATAAGAGGCGCAGGCGGAGGCTGAGGAACAGCAACAACAGTAGCTGC
AGTCGCAGACATCAAAGCATGTCATCGCGACAGCAGCAGTAGTAGCAGCA
GTCTCAGTGAGATGCTTTGACATCTGCGAATCGGTATCTTGGACCGCGGA
CGGTGATGGACGAGGGAAGGGAGGAGGCATGTGCTTGGTTGGTTTTGTGT
CATGTAGAGGAAAATATGTCTCCAATGTATTTATTTATTTTACGAATGTA
TGTGAAGAGGAAAGAAGCTTGAACGGAAAGGTAGGAAACAAGCAGAAAGG
AGAGTGCGTTTCGTAGGTCTAAAAGAAAGGAAAGAAAAAGACGGCACCAG
AAGGTAGAGAGTAAAAGCACAGTGCTTTTTCGTGGCACGAGGGTCACG

protein sequence of jgi.p|Nanoce1779_2|549031

>mRNA_1375-protein ID=mRNA_1375-protein|Name=jgi.p|Nanoce1779_2|549031|organism=Nannochloropsis oceanica|type=polypeptide|length=347bp
MGSLTDDELQKLFTWVDTIPLSRAKRNINRDFSDGVLAAEVVAYYFPRLV
DVHNYTASSNTARKLANWRTLNTKVLKKLKYVQTPIMLDDLAQAKVGAAE
VFLHSLQYKLARYKAEKSNSNNSSSSTNNSSSGSIIYADDDVHYLPKIGR
LSPITASPHGRGSPGSRFAPVTSPSSPASHPSLVLRPPGLLDHLPSAQKS
SPIPSSLFSDALPLSAAAAAAAPALGKDDLRQQQPARGHLGSVENAGRPQ
QKEQPSVDEEILLEKEETLQEMRETLNILELKVAELEQLLRVKDFRIQTL
SNEVKRLTLVVNSSSDISSSRSSKRSSSSSTEIAMAGGVTGGGSLL*

mRNA from alignment at scaffold_1:414352..415951-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1375 ID=mRNA_1375|Name=jgi.p|Nanoce1779_2|549031|organism=Nannochloropsis oceanica|type=mRNA|length=1600bp|location=Sequence derived from alignment at scaffold_1:414352..415951- (Nannochloropsis oceanica)
ATGGGAAGTCTCACCGACGATGAGCTCCAAAAGCTCTTCACGTGGGTAGA
TACCATTCCCCTCAGCCGTGCCAAGCGGAACATCAACCGTGATTTCAGCG
ATGGCGTGCTGGCGGCGGAGGTGGTTGCCTACTACTTCCCTCGGCTGGTC
GACGTACATAATTACACGGCTTCCTCTAACACGGCCCGAAAACTGGCAAA
TTGGCGGACTTTGAACACGAAGGTATTAAAGAAATTAAAATATGTTCAAA
CTCCGATTATGTTGGATGATCTGGCCCAAGCCAAAGTAGGGGCAGCGGAG
GTCTTTCTTCATTCCTTGCAGTACAAGCTTGCGAGGTACAAGGCGGAGAA
GAGTAACAGCAACAACAGCAGCAGCAGCACCAACAACAGTAGCAGTGGTA
GCATCATTTACGCCGACGATGATGTACACTATCTACCCAAGATTGGACGG
CTCTCGCCGATAACGGCCTCTCCCCATGGAAGAGGAAGCCCGGGCAGCAG
GTTCGCTCCTGTTACGTCGCCTTCCTCCCCTGCATCCCACCCCTCTCTTG
TTCTTCGCCCGCCTGGGCTTCTGGATCATTTACCTTCTGCTCAAAAGTCC
TCTCCCATTCCCTCCTCGCTCTTCTCCGATGCTCTTCCCCTCTCTGCTGC
TGCTGCTGCTGCTGCCCCTGCTCTAGGGAAGGATGACCTTCGGCAGCAGC
AGCCGGCTCGCGGGCATCTTGGCAGCGTGGAAAACGCTGGGCGACCCCAG
CAGAAAGAGCAGCCGTCGGTGGACGAGGAGATTTTGTTGGAGAAGGAAGA
GACGCTGCAAGAAATGAGGGAGGTATGTACTCGAGTGTTTTGTTTAGGGG
GGCTAGGTTTAGACTTGTTCATTCCATTATTGATATGCTGGCGTTCGGCA
TAGGATGCTCATTTCTAAAAGTTAAAAAAGATGTTTTACCCGCTTTCCCC
TCTCGTCCTCCTCCGTCCCCTCAGACCTTGAATATCCTCGAACTTAAGGT
GGCCGAGCTCGAGCAGCTCCTCCGCGTCAAGGACTTCAGAATACAAACCC
TCTCCAACGAAGTCAAACGGCTGACCCTTGTCGTAAACAGTAGCAGTGAC
ATTAGCAGCAGCAGAAGCAGCAAAAGAAGTAGTAGCAGCAGCACGGAAAT
TGCGATGGCAGGGGGAGTGACAGGTGGAGGGAGTTTGTTGTGAGGAGGAA
GAGTAATAAGAGGCGCAGGCGGAGGCTGAGGAACAGCAACAACAGTAGCT
GCAGTCGCAGACATCAAAGCATGTCATCGCGACAGCAGCAGTAGTAGCAG
CAGTCTCAGTGAGATGCTTTGACATCTGCGAATCGGTATCTTGGACCGCG
GACGGTGATGGACGAGGGAAGGGAGGAGGCATGTGCTTGGTTGGTTTTGT
GTCATGTAGAGGAAAATATGTCTCCAATGTATTTATTTATTTTACGAATG
TATGTGAAGAGGAAAGAAGCTTGAACGGAAAGGTAGGAAACAAGCAGAAA
GGAGAGTGCGTTTCGTAGGTCTAAAAGAAAGGAAAGAAAAAGACGGCACC
AGAAGGTAGAGAGTAAAAGCACAGTGCTTTTTCGTGGCACGAGGGTCACG

Coding sequence (CDS) from alignment at scaffold_1:414352..415951-

>mRNA_1375 ID=mRNA_1375|Name=jgi.p|Nanoce1779_2|549031|organism=Nannochloropsis oceanica|type=CDS|length=2082bp|location=Sequence derived from alignment at scaffold_1:414352..415951- (Nannochloropsis oceanica)
ACCTTGAATATCCTCGAACTTAAGGTGGCCGAGCTCGAGCAGCTCCTCCG
CGTCAAGGACTTCAGAATACAAACCCTCTCCAACGAAGTCAAACGGCTGA
CCCTTGTCGTAAACAGTAGCAGTGACATTAGCAGCAGCAGAAGCAGCAAA
AGAAGTAGTAGCAGCAGCACGGAAATTGCGATGGCAGGGGGAGTGACAGG
TGGAGGGAGTTTGTTGTGAATGGGAAGTCTCACCGACGATGAGCTCCAAA
AGCTCTTCACGTGGGTAGATACCATTCCCCTCAGCCGTGCCAAGCGGAAC
ATCAACCGTGATTTCAGCGATGGCGTGCTGGCGGCGGAGGTGGTTGCCTA
CTACTTCCCTCGGCTGGTCGACGTACATAATTACACGGCTTCCTCTAACA
CGGCCCGAAAACTGGCAAATTGGCGGACTTTGAACACGAAGGTATTAAAG
AAATTAAAATATGTTCAAACTCCGATTATGTTGGATGATCTGGCCCAAGC
CAAAGTAGGGGCAGCGGAGGTCTTTCTTCATTCCTTGCAGTACAAGCTTG
CGAGGTACAAGGCGGAGAAGAGTAACAGCAACAACAGCAGCAGCAGCACC
AACAACAGTAGCAGTGGTAGCATCATTTACGCCGACGATGATGTACACTA
TCTACCCAAGATTGGACGGCTCTCGCCGATAACGGCCTCTCCCCATGGAA
GAGGAAGCCCGGGCAGCAGGTTCGCTCCTGTTACGTCGCCTTCCTCCCCT
GCATCCCACCCCTCTCTTGTTCTTCGCCCGCCTGGGCTTCTGGATCATTT
ACCTTCTGCTCAAAAGTCCTCTCCCATTCCCTCCTCGCTCTTCTCCGATG
CTCTTCCCCTCTCTGCTGCTGCTGCTGCTGCTGCCCCTGCTCTAGGGAAG
GATGACCTTCGGCAGCAGCAGCCGGCTCGCGGGCATCTTGGCAGCGTGGA
AAACGCTGGGCGACCCCAGCAGAAAGAGCAGCCGTCGGTGGACGAGGAGA
TTTTGTTGGAGAAGGAAGAGACGCTGCAAGAAATGAGGGAGACCTTGAAT
ATCCTCGAACTTAAGGTGGCCGAGCTCGAGCAGCTCCTCCGCGTCAAGGA
CTTCAGAATACAAACCCTCTCCAACGAAGTCAAACGGCTGACCCTTGTCG
TAAACAGTAGCAGTGACATTAGCAGCAGCAGAAGCAGCAAAAGAAGTAGT
AGCAGCAGCACGGAAATTGCGATGGCAGGGGGAGTGACAGGTGGAGGGAG
TTTGTTGTGAATGGGAAGTCTCACCGACGATGAGCTCCAAAAGCTCTTCA
CGTGGGTAGATACCATTCCCCTCAGCCGTGCCAAGCGGAACATCAACCGT
GATTTCAGCGATGGCGTGCTGGCGGCGGAGGTGGTTGCCTACTACTTCCC
TCGGCTGGTCGACGTACATAATTACACGGCTTCCTCTAACACGGCCCGAA
AACTGGCAAATTGGCGGACTTTGAACACGAAGGTATTAAAGAAATTAAAA
TATGTTCAAACTCCGATTATGTTGGATGATCTGGCCCAAGCCAAAGTAGG
GGCAGCGGAGGTCTTTCTTCATTCCTTGCAGTACAAGCTTGCGAGGTACA
AGGCGGAGAAGAGTAACAGCAACAACAGCAGCAGCAGCACCAACAACAGT
AGCAGTGGTAGCATCATTTACGCCGACGATGATGTACACTATCTACCCAA
GATTGGACGGCTCTCGCCGATAACGGCCTCTCCCCATGGAAGAGGAAGCC
CGGGCAGCAGGTTCGCTCCTGTTACGTCGCCTTCCTCCCCTGCATCCCAC
CCCTCTCTTGTTCTTCGCCCGCCTGGGCTTCTGGATCATTTACCTTCTGC
TCAAAAGTCCTCTCCCATTCCCTCCTCGCTCTTCTCCGATGCTCTTCCCC
TCTCTGCTGCTGCTGCTGCTGCTGCCCCTGCTCTAGGGAAGGATGACCTT
CGGCAGCAGCAGCCGGCTCGCGGGCATCTTGGCAGCGTGGAAAACGCTGG
GCGACCCCAGCAGAAAGAGCAGCCGTCGGTGGACGAGGAGATTTTGTTGG
AGAAGGAAGAGACGCTGCAAGAAATGAGGGAG

Synonyms

Publications