jgi.p|Nanoce1779_2|571904, mRNA_1374 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571904
Unique NamemRNA_1374
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length704
Alignment locationscaffold_1:412772..414134 +

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Properties
Property NameValue
TranscriptId571990
TrackFilteredModels2
ProteinId571904
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:412772..414134 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571904gene_1374Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571904mRNA_1374-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1374CDS_1374Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1374 ID=mRNA_1374|Name=jgi.p|Nanoce1779_2|571904|organism=Nannochloropsis oceanica|type=mRNA|length=704bp
CGCAGGGACCATCTCCGGCCGCCACTCACCATGCATTCATCCCACACACA
CCTTTCTTCTCTTCTGCTTTCTCATGCAGACCCCTCCGTACTTTCAGGCT
ATGGCAAAGAGTCAAGTTGTTTTTGACCTCCTGTCTGTGGCCGCGATAAT
TGTGGATGGTTGAGAGGTCGCCTTACCAATGGCCAGGCAGGCCCCTTCAT
TCCTCTCCCTTCTTCGCTACCCCCTTCATCAGCCGCACTCCTTTGTAATA
CTTGTCAAACCCATTTCATTCCCATCCTTCCTCATAATTAACAGGACCTA
TTCAGCAGAAGCAGAGGCAGCCCCGTTGTTTAGCAAGATGGTCAAGAACA
TGAAGTCAGAGCCCGTACGCCTGTATGTGAAGGGTGTTGTGCTGGGATAC
AAACGCGGCCTCCGCGAGCAGACGAACCACACCAACCTGGTGAAGATCGA
CGGGTTGGACGAGAAGAAGGACGTGGGCTTCTACCTGGGCAAGCGCGTGG
CTTACATCTATAAGGCCAAGACGCTGAAGAATAACACGAAATACCGCGCG
ATTTGGGGCAAAGTGACCCGGGCGCACGGCAGCAACGGCGTGGTACGTGC
CAAGTTTCGACGAAACCTCCCGCCCAAGGCGATCGGTGGGCCCGTGCGCG
TGATGCTGTACCCTTCATCAATTTAAGGAGGAGGAGGGAGAGGTGGGAGA
AACA
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protein sequence of jgi.p|Nanoce1779_2|571904

>mRNA_1374-protein ID=mRNA_1374-protein|Name=jgi.p|Nanoce1779_2|571904|organism=Nannochloropsis oceanica|type=polypeptide|length=166bp
MARQAPSFLSLLRYPLHQPHSFVILVKPISFPSFLIINRTYSAEAEAAPL
FSKMVKNMKSEPVRLYVKGVVLGYKRGLREQTNHTNLVKIDGLDEKKDVG
FYLGKRVAYIYKAKTLKNNTKYRAIWGKVTRAHGSNGVVRAKFRRNLPPK
AIGGPVRVMLYPSSI*
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mRNA from alignment at scaffold_1:412772..414134+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1374 ID=mRNA_1374|Name=jgi.p|Nanoce1779_2|571904|organism=Nannochloropsis oceanica|type=mRNA|length=1363bp|location=Sequence derived from alignment at scaffold_1:412772..414134+ (Nannochloropsis oceanica)
CGCAGGGACCATCTCCGGCCGCCACTCACCATGCATTCATCCCACACACA
CCTTTCTTCTCTTCTGCTTTCTCATGCAGACCCCTCCGTACTTTCAGGCT
ATGGCAAAGAGTCAAGTTGTTTTTGACCTCCTGTCTGTGGCCGCGATAAT
TGTGGATGGTTGAGAGGTCGCCTTACCAATGGCCAGGCAGGCCCCTTCAT
TCCTCTCCCTTCTTCGCTACCCCCTTCATCAGCCGCACTCCTTTGTAATA
CTTGTCAAACCCATTTCATTCCCATCCTTCCTCATAATTAACAGGACCTA
TTCAGCAGAAGCAGAGGCAGCCCCGTTGTTTAGCAAGATGGTCAAGAACA
TGAAGTCAGAGGTGAGTTTCTGCGATGTGAGTGATGTGATGAGCGGAGGC
GAGAGGGAGGGGGAGGAGGCAGGGCTTGTACGCCAGATGTCGGTCGATAT
CCGGCACCTTTATGTGGAGTGCTATAGCGGCTGCTGCCGGCGCATTGTGT
GGCAGCTAGAGTGATGCTGCTGGTAATGGGAGCGCTGCAGGGAGTTGCTC
TCTTGAGGATGACGTGCTGCGTGCTGCGCCTCCAGGGGCGACTACGGCAG
GAGATCACGTCTATTTCGTGGGTGATTGTTTAGAGAAGCCAGGGCGTTTG
GGTTTCCTGGCTGCTTATTTGCGCTGAACGTGTGCCTGCTGGGGAACATG
TTGGCTGCGCACTGCGTGGTAGCGAGAGGGAGGGTAGACGGGCGCCATCC
CGGGAGTCCCCCAGGTGTAACGATGGAGGTAACGGAGGCGTCTCTACCCT
TGTTCCAGAATACATCGGGAAAGTGCTGGGTTCATCGGCTCGCTGGCACG
GACACGGATGTGCTTGGAACGGGTTTGGTCTTCGCACACCTCGAGCTTTG
GATAATAAATCTTAGTAGGAAGATGTCTGCCTGCTTTCACAACTCACATT
TACTGTAGAGTCCACTCATTCCCTTCGTCACTCCTATCACTACTATATTA
TATTATCCTTTATAACACAGCCCGTACGCCTGTATGTGAAGGGTGTTGTG
CTGGGATACAAACGCGGCCTCCGCGAGCAGACGAACCACACCAACCTGGT
GAAGATCGACGGGTTGGACGAGAAGAAGGACGTGGGCTTCTACCTGGGCA
AGCGCGTGGCTTACATCTATAAGGCCAAGACGCTGAAGAATAACACGAAA
TACCGCGCGATTTGGGGCAAAGTGACCCGGGCGCACGGCAGCAACGGCGT
GGTACGTGCCAAGTTTCGACGAAACCTCCCGCCCAAGGCGATCGGTGGGC
CCGTGCGCGTGATGCTGTACCCTTCATCAATTTAAGGAGGAGGAGGGAGA
GGTGGGAGAAACA
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Coding sequence (CDS) from alignment at scaffold_1:412772..414134+

>mRNA_1374 ID=mRNA_1374|Name=jgi.p|Nanoce1779_2|571904|organism=Nannochloropsis oceanica|type=CDS|length=996bp|location=Sequence derived from alignment at scaffold_1:412772..414134+ (Nannochloropsis oceanica)
ATGGCCAGGCAGGCCCCTTCATTCCTCTCCCTTCTTCGCTACCCCCTTCA
TCAGCCGCACTCCTTTGTAATACTTGTCAAACCCATTTCATTCCCATCCT
TCCTCATAATTAACAGGACCTATTCAGCAGAAGCAGAGGCAGCCCCGTTG
TTTAGCAAGATGGTCAAGAACATGAAGTCAGAGCCCGTACGCCTGTATGT
GAAGGGTGTTGTGCTGGGATACAAACGCGGCCTCCGCGAGCAGACGAACC
ACACCAACCTGGTGAAGATCGACGGGTTGGACGAGAAGAAGGACGTGGGC
TTCTACCTGGGCAAGCGCGTGGCTTACATCTATAAGGCCAAGACGCTGAA
GAATAACACGAAATACCGCGCGATTTGGGGCAAAGTGACCCGGGCGCACG
GCAGCAACGGCGTGGTACGTGCCAAGTTTCGACGAAACCTCCCGCCCAAG
GCGATCGGTGGGCCCGTGCGCGTGATGCTGTACCCTTCATCAATTTAAAT
GGCCAGGCAGGCCCCTTCATTCCTCTCCCTTCTTCGCTACCCCCTTCATC
AGCCGCACTCCTTTGTAATACTTGTCAAACCCATTTCATTCCCATCCTTC
CTCATAATTAACAGGACCTATTCAGCAGAAGCAGAGGCAGCCCCGTTGTT
TAGCAAGATGGTCAAGAACATGAAGTCAGAGCCCGTACGCCTGTATGTGA
AGGGTGTTGTGCTGGGATACAAACGCGGCCTCCGCGAGCAGACGAACCAC
ACCAACCTGGTGAAGATCGACGGGTTGGACGAGAAGAAGGACGTGGGCTT
CTACCTGGGCAAGCGCGTGGCTTACATCTATAAGGCCAAGACGCTGAAGA
ATAACACGAAATACCGCGCGATTTGGGGCAAAGTGACCCGGGCGCACGGC
AGCAACGGCGTGGTACGTGCCAAGTTTCGACGAAACCTCCCGCCCAAGGC
GATCGGTGGGCCCGTGCGCGTGATGCTGTACCCTTCATCAATTTAA
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Synonyms
Publications