jgi.p|Nanoce1779_2|571901, mRNA_1373 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571901
Unique NamemRNA_1373
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1137
Alignment locationscaffold_1:410271..411663 -

Link to JBrowse

Properties
Property NameValue
TranscriptId571987
TrackFilteredModels2
ProteinId571901
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:410271..411663 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571901gene_1373Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571901mRNA_1373-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1373CDS_1373Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1373 ID=mRNA_1373|Name=jgi.p|Nanoce1779_2|571901|organism=Nannochloropsis oceanica|type=mRNA|length=1137bp
CAAGGACAAAACGGACCTTGACACGCAAGGTCCCGAAGCTGATGCTGATG
CCCCGTCCAAATCGTCTACTCTTCCCACAACTTCCTCGTTTATGTCTTCC
CACACTGCTGCCGCACTATCCTCAGCAGCAGAAGCAGCAGCAGCAGTAGA
AAACAAAAGGCCCATCCCCCTTATCGGTACCAACCTCGACTACGACACCG
AAGGTTACCTTTCCCGCTTTGCCTCCTCCATTCCTGAATCCCCCCAGATT
TCCACACATAAACTTATCGCCTGGGGTGGGTGTGATCCTATGGTGGCGAG
CCAAATAAGAAATTTACTGGATTGCAGGCCTGATTTCCGTGTCTATCGTT
CTCGGAACAATCAGGGCTGTGCAGCCGGCTGGAATATTATCTTGAAATAT
ATGGCGATGCATGATCGAGAAGAAATACCCTGGGCCATCATATTCAACGC
CGACATGTACACACCTCCGGGTAGTCTTGACAGATTTGGACAGGAGGTGT
GGGCAGCAATCGACGCAGATCCCTCCTTGTGTGTCGGTTTCTTCAATGCC
CGAGGAGCAGGGGTGGAGGGACGGTACTGTAGTTACGTGTACACGCGTAG
GGCGCTGGAGGTGTTGGGCCTCTTTGATGAGAATATCTACCCGGCTTATT
ATGAAGATGTGGAGATGGACGTGCGGATGGGGAGGGCAGTTGCGGCCGGG
GTGTGTGCGCCGGCGCGGTGGTTTAATTCGAGTGAGTTTGTGCATGGCAA
GCCGGGCGTGGGGAGTAAGGGGCAGAGTAGGTACGTAAGCGGGACGAAAT
TGATGGAAGCGAGAATGAGAAGGGAGGGAGATGAGGAGATGCGGGCAGTA
GCTCGACGCTGGTCGGAGAAGATAAAGAGGGGAAAGAAGGCCAGTCCTCT
TTATTTGCATCAAAAGTGGGGCTGTAGGCCAGAGAAGGAGATTGATTTGG
CGACGTGTAGGTTGCAGCACCCGTTTGGGAATGCGGCGAGGCCGCTGTCG
TACTGGCAGTTGGATGCGGGGCGGCGTCAGTGTGTGGAGGAGGGGAGGGA
GGGAGTCGAGGGCATGTGTGAGTACAGGTTGGTGGAGAATTAAAAGACGG
AGGGTAGAAGAAGAAGCAGCAGCAGCAGCAGCAGCAG
back to top

protein sequence of jgi.p|Nanoce1779_2|571901

>mRNA_1373-protein ID=mRNA_1373-protein|Name=jgi.p|Nanoce1779_2|571901|organism=Nannochloropsis oceanica|type=polypeptide|length=334bp
MSSHTAAALSSAAEAAAAVENKRPIPLIGTNLDYDTEGYLSRFASSIPES
PQISTHKLIAWGGCDPMVASQIRNLLDCRPDFRVYRSRNNQGCAAGWNII
LKYMAMHDREEIPWAIIFNADMYTPPGSLDRFGQEVWAAIDADPSLCVGF
FNARGAGVEGRYCSYVYTRRALEVLGLFDENIYPAYYEDVEMDVRMGRAV
AAGVCAPARWFNSSEFVHGKPGVGSKGQSRYVSGTKLMEARMRREGDEEM
RAVARRWSEKIKRGKKASPLYLHQKWGCRPEKEIDLATCRLQHPFGNAAR
PLSYWQLDAGRRQCVEEGREGVEGMCEYRLVEN*
back to top

mRNA from alignment at scaffold_1:410271..411663-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1373 ID=mRNA_1373|Name=jgi.p|Nanoce1779_2|571901|organism=Nannochloropsis oceanica|type=mRNA|length=1393bp|location=Sequence derived from alignment at scaffold_1:410271..411663- (Nannochloropsis oceanica)
CAAGGACAAAACGGACCTTGACACGCAAGGTCCCGAAGCTGATGCTGATG
CCCCGTCCAAATCGTCTACTCTTCCCACAACTTCCTCGTTTATGTCTTCC
CACACTGCTGCCGCACTATCCTCAGCAGCAGAAGCAGCAGCAGCAGTAGA
AAACAAAAGGCCCATCCCCCTTATCGGTACCAACCTCGACTACGACACCG
AAGGTTACCTTTCCCGCTTTGCCTCCTCCATTCCTGAATCCCCCCAGATT
TCCACACATAAACTTATCGCCTGGGGTGGGTGTGATCCTATGGTGGCGAG
CCAAATAAGAAATTTACTGGATTGCAGGCCTGATTTCCGTGTCTATCGTT
CTCGGAACAATCAGGGCTGTGCAGCCGGCTGGAATATTATCTTGAAATAT
ATGGCGATGCATGATCGAGAAGAAATACCCTGGTGCGTCCTCTACTTGAC
CTTTCTGTCGTCCCTCCCCCCTTGAATCAACATTGACCTTTGTGTCGTCC
CTCCCTCGTTGAATCAACATCGACCTTTCTGTCGTCCCTCCCTCCTTGAA
TCAACATTGACCATCTGTCGTCCCTTTCTCAATCCCTTCCTCCCTCCTTA
TCGCCCAGGACAATCATCTTCTCATACCCCTCTTTCCTTGTTTCCCTCGT
CCTCACCTTCCCTTCTTCTTCCCCTATTATTTGAACAGGGCCATCATATT
CAACGCCGACATGTACACACCTCCGGGTAGTCTTGACAGATTTGGACAGG
AGGTGTGGGCAGCAATCGACGCAGATCCCTCCTTGTGTGTCGGTTTCTTC
AATGCCCGAGGAGCAGGGGTGGAGGGACGGTACTGTAGTTACGTGTACAC
GCGTAGGGCGCTGGAGGTGTTGGGCCTCTTTGATGAGAATATCTACCCGG
CTTATTATGAAGATGTGGAGATGGACGTGCGGATGGGGAGGGCAGTTGCG
GCCGGGGTGTGTGCGCCGGCGCGGTGGTTTAATTCGAGTGAGTTTGTGCA
TGGCAAGCCGGGCGTGGGGAGTAAGGGGCAGAGTAGGTACGTAAGCGGGA
CGAAATTGATGGAAGCGAGAATGAGAAGGGAGGGAGATGAGGAGATGCGG
GCAGTAGCTCGACGCTGGTCGGAGAAGATAAAGAGGGGAAAGAAGGCCAG
TCCTCTTTATTTGCATCAAAAGTGGGGCTGTAGGCCAGAGAAGGAGATTG
ATTTGGCGACGTGTAGGTTGCAGCACCCGTTTGGGAATGCGGCGAGGCCG
CTGTCGTACTGGCAGTTGGATGCGGGGCGGCGTCAGTGTGTGGAGGAGGG
GAGGGAGGGAGTCGAGGGCATGTGTGAGTACAGGTTGGTGGAGAATTAAA
AGACGGAGGGTAGAAGAAGAAGCAGCAGCAGCAGCAGCAGCAG
back to top

Coding sequence (CDS) from alignment at scaffold_1:410271..411663-

>mRNA_1373 ID=mRNA_1373|Name=jgi.p|Nanoce1779_2|571901|organism=Nannochloropsis oceanica|type=CDS|length=2004bp|location=Sequence derived from alignment at scaffold_1:410271..411663- (Nannochloropsis oceanica)
GGCCATCATATTCAACGCCGACATGTACACACCTCCGGGTAGTCTTGACA
GATTTGGACAGGAGGTGTGGGCAGCAATCGACGCAGATCCCTCCTTGTGT
GTCGGTTTCTTCAATGCCCGAGGAGCAGGGGTGGAGGGACGGTACTGTAG
TTACGTGTACACGCGTAGGGCGCTGGAGGTGTTGGGCCTCTTTGATGAGA
ATATCTACCCGGCTTATTATGAAGATGTGGAGATGGACGTGCGGATGGGG
AGGGCAGTTGCGGCCGGGGTGTGTGCGCCGGCGCGGTGGTTTAATTCGAG
TGAGTTTGTGCATGGCAAGCCGGGCGTGGGGAGTAAGGGGCAGAGTAGGT
ACGTAAGCGGGACGAAATTGATGGAAGCGAGAATGAGAAGGGAGGGAGAT
GAGGAGATGCGGGCAGTAGCTCGACGCTGGTCGGAGAAGATAAAGAGGGG
AAAGAAGGCCAGTCCTCTTTATTTGCATCAAAAGTGGGGCTGTAGGCCAG
AGAAGGAGATTGATTTGGCGACGTGTAGGTTGCAGCACCCGTTTGGGAAT
GCGGCGAGGCCGCTGTCGTACTGGCAGTTGGATGCGGGGCGGCGTCAGTG
TGTGGAGGAGGGGAGGGAGGGAGTCGAGGGCATGTGTGAGTACAGGTTGG
TGGAGAATTAAATGTCTTCCCACACTGCTGCCGCACTATCCTCAGCAGCA
GAAGCAGCAGCAGCAGTAGAAAACAAAAGGCCCATCCCCCTTATCGGTAC
CAACCTCGACTACGACACCGAAGGTTACCTTTCCCGCTTTGCCTCCTCCA
TTCCTGAATCCCCCCAGATTTCCACACATAAACTTATCGCCTGGGGTGGG
TGTGATCCTATGGTGGCGAGCCAAATAAGAAATTTACTGGATTGCAGGCC
TGATTTCCGTGTCTATCGTTCTCGGAACAATCAGGGCTGTGCAGCCGGCT
GGAATATTATCTTGAAATATATGGCGATGCATGATCGAGAAGAAATACCC
TGGGCCATCATATTCAACGCCGACATGTACACACCTCCGGGTAGTCTTGA
CAGATTTGGACAGGAGGTGTGGGCAGCAATCGACGCAGATCCCTCCTTGT
GTGTCGGTTTCTTCAATGCCCGAGGAGCAGGGGTGGAGGGACGGTACTGT
AGTTACGTGTACACGCGTAGGGCGCTGGAGGTGTTGGGCCTCTTTGATGA
GAATATCTACCCGGCTTATTATGAAGATGTGGAGATGGACGTGCGGATGG
GGAGGGCAGTTGCGGCCGGGGTGTGTGCGCCGGCGCGGTGGTTTAATTCG
AGTGAGTTTGTGCATGGCAAGCCGGGCGTGGGGAGTAAGGGGCAGAGTAG
GTACGTAAGCGGGACGAAATTGATGGAAGCGAGAATGAGAAGGGAGGGAG
ATGAGGAGATGCGGGCAGTAGCTCGACGCTGGTCGGAGAAGATAAAGAGG
GGAAAGAAGGCCAGTCCTCTTTATTTGCATCAAAAGTGGGGCTGTAGGCC
AGAGAAGGAGATTGATTTGGCGACGTGTAGGTTGCAGCACCCGTTTGGGA
ATGCGGCGAGGCCGCTGTCGTACTGGCAGTTGGATGCGGGGCGGCGTCAG
TGTGTGGAGGAGGGGAGGGAGGGAGTCGAGGGCATGTGTGAGTACAGGTT
GGTGGAGAATTAAATGTCTTCCCACACTGCTGCCGCACTATCCTCAGCAG
CAGAAGCAGCAGCAGCAGTAGAAAACAAAAGGCCCATCCCCCTTATCGGT
ACCAACCTCGACTACGACACCGAAGGTTACCTTTCCCGCTTTGCCTCCTC
CATTCCTGAATCCCCCCAGATTTCCACACATAAACTTATCGCCTGGGGTG
GGTGTGATCCTATGGTGGCGAGCCAAATAAGAAATTTACTGGATTGCAGG
CCTGATTTCCGTGTCTATCGTTCTCGGAACAATCAGGGCTGTGCAGCCGG
CTGGAATATTATCTTGAAATATATGGCGATGCATGATCGAGAAGAAATAC
CCTG
back to top
Synonyms
Publications