jgi.p|Nanoce1779_2|571898, mRNA_1372 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|571898
Unique Name	mRNA_1372
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2220
Alignment location	scaffold_1:407769..409988 +

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Properties


Property Name	Value
TranscriptId	571984
Track	FilteredModels2
ProteinId	571898

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:407769..409988 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|571898	gene_1372	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|571898	mRNA_1372-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1372	CDS_1372	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:407769..409988+
coding sequence from alignment at scaffold_1:407769..409988+

mRNA sequence

>mRNA_1372 ID=mRNA_1372|Name=jgi.p|Nanoce1779_2|571898|organism=Nannochloropsis oceanica|type=mRNA|length=2220bp
CAGAGGGCCGCCGCAGGGACGCGTTTCCAGCTACCCAAAAGCGGTCTACG
TGGTCGGTCTTCAGCCGAGCCTGCGCTCCCCTCTCTCTCCTGACCTATGT
CGAGACGAGCAAGCCTCTCACGACTATTCCTCTTCGCCTGCTACAGCCTC
CTCCCTTTCTTCTCCAGTCTGCATGCATTTCTTCTGCCTCACGCACCAGC
ATCCGCCACGGGCCGGCTAACAAGAAGGCACATGGCACCTTCCCAGCAGC
GGGCAGAGGAGGTCTTGCGTTCCAAGCTCCAAGAGGAAAACACAGGCCCG
CAGTCCGCCCCAGAAGTCCCTGTCCCTCCGCATCTTCCCAAGGACGATGA
CATGAGCGACTATGATCTCAAAATTGTCCGGGAGCTGACTCAGGAGCGGC
CCTACTTTCAGTTTCTCTCCGAAAAAGCCGTGACGGTGCTTGACGACACT
TATCTAAGCTTGAAAGAGTCCTGGACCGCCCCATCGCCTTCCGACTTTCG
CAAAAGTGCCAAAAACTTAAATTTTGTCAAGGGTACTCGGCAAAGAATTG
TTGTTCTGGGGACAGGATGGGGCGCTCATGCGTTCTTGCAGTCAGTCGAT
GCCCTGAAATACGAGGTGGTTGTGGTAAGCCCCCGGAATTTCATGCTATT
TACTCCCATGCTTGCGGGCTCAGCGGTGGGTACAGTAGAGTTTTTGAGCA
TTACGGAGCCGATTCGAAATGTGAATCCGTATGCGGATTATTTGGAAGCG
ACTTGCACGGGTGTGAACGCGGCCAAGAAGAGCATTACGTGTCAGTCGGT
TATCTGTGAAGGAAACAGCTGCGACATCGAGGAGTTCGAATTGTCTTATG
ACATGCTGTTGGTGGCGGTCGGGGCGACTACCAACACGTATGGTATTCCG
GGGGTGAAGGAGCACTGCCACTTTCTCAAGCAGATCAATGACGCCGTCAA
GCTGCGGACGTCGATCGGCAATGCCTTTGAACGCGCCAACCTGCCTGGGC
TAACTGATGCACAGCGCAAGCAAGCCCTGACATTCGTCGTAGTCGGCGCG
GGGCCGACCGGTGTGGAGTTTACGGCGGAGCTGAGGGACTTTGTGGAGGA
TGATGTGCCGAAGTTTTATCCACATTTGCTGCCCTTCGTGAGGATAAAGT
TGGTGGAAGCGAGCGATCGCGTTCTCATGATGTTCGACGGGGCGCTCCAA
GCAGAGGCCATCAAGAGACTTACCGAGGCCCCTCAAAAACTGGTCGAGCG
AGGACTAATCTCCAAGGACATGACCCAGGTGTTATTGAAAGTAGGGGTGA
AAGAGGTGAGGAACCGCGAGATCGTCTTGTCGGACAACAGTACCATTCCC
TACGGCCTGGCTGTGTGGGCGGCAGGCAACGGTCCCTTGCCTCTGGTGCT
GAATCTCATTAAGCAATCTCCAGAGCAAGAGGAGAAGCAGGGTTTTGGGC
GGGGAAGGCTTGTGACGGACGAGTGGATGCGGGTTAAGGGCGTGGATGGT
GTTTTTTCGATCGGCGACTGCTGTGTGATCGATGATAAGCCTCTGCCGGC
GAACGCCCAGGCGGCCTCGCAACAAGGTTATTTCCTCGGGCGGCAACTTA
GCAAGAATATTGATTTTTCACGACCCATCCCGGAAAGGGTTGGCCCCGTG
ACGACTCCTGGGGAGTTTCTCTCCGTGGGAGAGAAGAGGGAGAATGGTAA
GATTTACGCAAAAGGATTTCAATTTTTGAATTTGGGGACGTTGGCGTACA
CGGGAGGGGATAGTGCCTTGGCTCAGATTGCGGTAGATAAGGCGGCGATC
AAGTCGAGTGGAGAAGCAGGCTTTTTGTTGTGGCGGTCAGTGTACTTGTC
GAAGCAGGTGAGTTTGCGGAATCGCGCGTTGGTGTTTTTTGATTGGGTCA
AGAGCAGGTTGTGGGGGCGGGACCTTACTAGATTTAACGAGACGTAGAAA
GCTAGAAGAGGTGTTCATCTCACTTGATTTCCCTCCTTTCCTGTGTGTGC
TTGCGTGCGTGCGTGTGCGTGTCCACGAATGTATGTGTGCGTGTCAGTGT
GTTTTGTGTCTGTGTGTTTTTGGTATTGATATTGAGCGTATGTGTGGCGT
TGGTGTAATTAATTAGTGGCAAGTGGAGGGAGAACAGAAAGAAAAAATAG
CGGCGACGACAAGTAAGCGGTTAGAGAAGCAGAGAAGTGAAAAAAAAGAA
ACAGAAAATAACATCATTTA

protein sequence of jgi.p|Nanoce1779_2|571898

>mRNA_1372-protein ID=mRNA_1372-protein|Name=jgi.p|Nanoce1779_2|571898|organism=Nannochloropsis oceanica|type=polypeptide|length=617bp
MSRRASLSRLFLFACYSLLPFFSSLHAFLLPHAPASATGRLTRRHMAPSQ
QRAEEVLRSKLQEENTGPQSAPEVPVPPHLPKDDDMSDYDLKIVRELTQE
RPYFQFLSEKAVTVLDDTYLSLKESWTAPSPSDFRKSAKNLNFVKGTRQR
IVVLGTGWGAHAFLQSVDALKYEVVVVSPRNFMLFTPMLAGSAVGTVEFL
SITEPIRNVNPYADYLEATCTGVNAAKKSITCQSVICEGNSCDIEEFELS
YDMLLVAVGATTNTYGIPGVKEHCHFLKQINDAVKLRTSIGNAFERANLP
GLTDAQRKQALTFVVVGAGPTGVEFTAELRDFVEDDVPKFYPHLLPFVRI
KLVEASDRVLMMFDGALQAEAIKRLTEAPQKLVERGLISKDMTQVLLKVG
VKEVRNREIVLSDNSTIPYGLAVWAAGNGPLPLVLNLIKQSPEQEEKQGF
GRGRLVTDEWMRVKGVDGVFSIGDCCVIDDKPLPANAQAASQQGYFLGRQ
LSKNIDFSRPIPERVGPVTTPGEFLSVGEKRENGKIYAKGFQFLNLGTLA
YTGGDSALAQIAVDKAAIKSSGEAGFLLWRSVYLSKQVSLRNRALVFFDW
VKSRLWGRDLTRFNET*

mRNA from alignment at scaffold_1:407769..409988+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1372 ID=mRNA_1372|Name=jgi.p|Nanoce1779_2|571898|organism=Nannochloropsis oceanica|type=mRNA|length=2220bp|location=Sequence derived from alignment at scaffold_1:407769..409988+ (Nannochloropsis oceanica)
CAGAGGGCCGCCGCAGGGACGCGTTTCCAGCTACCCAAAAGCGGTCTACG
TGGTCGGTCTTCAGCCGAGCCTGCGCTCCCCTCTCTCTCCTGACCTATGT
CGAGACGAGCAAGCCTCTCACGACTATTCCTCTTCGCCTGCTACAGCCTC
CTCCCTTTCTTCTCCAGTCTGCATGCATTTCTTCTGCCTCACGCACCAGC
ATCCGCCACGGGCCGGCTAACAAGAAGGCACATGGCACCTTCCCAGCAGC
GGGCAGAGGAGGTCTTGCGTTCCAAGCTCCAAGAGGAAAACACAGGCCCG
CAGTCCGCCCCAGAAGTCCCTGTCCCTCCGCATCTTCCCAAGGACGATGA
CATGAGCGACTATGATCTCAAAATTGTCCGGGAGCTGACTCAGGAGCGGC
CCTACTTTCAGTTTCTCTCCGAAAAAGCCGTGACGGTGCTTGACGACACT
TATCTAAGCTTGAAAGAGTCCTGGACCGCCCCATCGCCTTCCGACTTTCG
CAAAAGTGCCAAAAACTTAAATTTTGTCAAGGGTACTCGGCAAAGAATTG
TTGTTCTGGGGACAGGATGGGGCGCTCATGCGTTCTTGCAGTCAGTCGAT
GCCCTGAAATACGAGGTGGTTGTGGTAAGCCCCCGGAATTTCATGCTATT
TACTCCCATGCTTGCGGGCTCAGCGGTGGGTACAGTAGAGTTTTTGAGCA
TTACGGAGCCGATTCGAAATGTGAATCCGTATGCGGATTATTTGGAAGCG
ACTTGCACGGGTGTGAACGCGGCCAAGAAGAGCATTACGTGTCAGTCGGT
TATCTGTGAAGGAAACAGCTGCGACATCGAGGAGTTCGAATTGTCTTATG
ACATGCTGTTGGTGGCGGTCGGGGCGACTACCAACACGTATGGTATTCCG
GGGGTGAAGGAGCACTGCCACTTTCTCAAGCAGATCAATGACGCCGTCAA
GCTGCGGACGTCGATCGGCAATGCCTTTGAACGCGCCAACCTGCCTGGGC
TAACTGATGCACAGCGCAAGCAAGCCCTGACATTCGTCGTAGTCGGCGCG
GGGCCGACCGGTGTGGAGTTTACGGCGGAGCTGAGGGACTTTGTGGAGGA
TGATGTGCCGAAGTTTTATCCACATTTGCTGCCCTTCGTGAGGATAAAGT
TGGTGGAAGCGAGCGATCGCGTTCTCATGATGTTCGACGGGGCGCTCCAA
GCAGAGGCCATCAAGAGACTTACCGAGGCCCCTCAAAAACTGGTCGAGCG
AGGACTAATCTCCAAGGACATGACCCAGGTGTTATTGAAAGTAGGGGTGA
AAGAGGTGAGGAACCGCGAGATCGTCTTGTCGGACAACAGTACCATTCCC
TACGGCCTGGCTGTGTGGGCGGCAGGCAACGGTCCCTTGCCTCTGGTGCT
GAATCTCATTAAGCAATCTCCAGAGCAAGAGGAGAAGCAGGGTTTTGGGC
GGGGAAGGCTTGTGACGGACGAGTGGATGCGGGTTAAGGGCGTGGATGGT
GTTTTTTCGATCGGCGACTGCTGTGTGATCGATGATAAGCCTCTGCCGGC
GAACGCCCAGGCGGCCTCGCAACAAGGTTATTTCCTCGGGCGGCAACTTA
GCAAGAATATTGATTTTTCACGACCCATCCCGGAAAGGGTTGGCCCCGTG
ACGACTCCTGGGGAGTTTCTCTCCGTGGGAGAGAAGAGGGAGAATGGTAA
GATTTACGCAAAAGGATTTCAATTTTTGAATTTGGGGACGTTGGCGTACA
CGGGAGGGGATAGTGCCTTGGCTCAGATTGCGGTAGATAAGGCGGCGATC
AAGTCGAGTGGAGAAGCAGGCTTTTTGTTGTGGCGGTCAGTGTACTTGTC
GAAGCAGGTGAGTTTGCGGAATCGCGCGTTGGTGTTTTTTGATTGGGTCA
AGAGCAGGTTGTGGGGGCGGGACCTTACTAGATTTAACGAGACGTAGAAA
GCTAGAAGAGGTGTTCATCTCACTTGATTTCCCTCCTTTCCTGTGTGTGC
TTGCGTGCGTGCGTGTGCGTGTCCACGAATGTATGTGTGCGTGTCAGTGT
GTTTTGTGTCTGTGTGTTTTTGGTATTGATATTGAGCGTATGTGTGGCGT
TGGTGTAATTAATTAGTGGCAAGTGGAGGGAGAACAGAAAGAAAAAATAG
CGGCGACGACAAGTAAGCGGTTAGAGAAGCAGAGAAGTGAAAAAAAAGAA
ACAGAAAATAACATCATTTA

Coding sequence (CDS) from alignment at scaffold_1:407769..409988+

>mRNA_1372 ID=mRNA_1372|Name=jgi.p|Nanoce1779_2|571898|organism=Nannochloropsis oceanica|type=CDS|length=1851bp|location=Sequence derived from alignment at scaffold_1:407769..409988+ (Nannochloropsis oceanica)
ATGTCGAGACGAGCAAGCCTCTCACGACTATTCCTCTTCGCCTGCTACAG
CCTCCTCCCTTTCTTCTCCAGTCTGCATGCATTTCTTCTGCCTCACGCAC
CAGCATCCGCCACGGGCCGGCTAACAAGAAGGCACATGGCACCTTCCCAG
CAGCGGGCAGAGGAGGTCTTGCGTTCCAAGCTCCAAGAGGAAAACACAGG
CCCGCAGTCCGCCCCAGAAGTCCCTGTCCCTCCGCATCTTCCCAAGGACG
ATGACATGAGCGACTATGATCTCAAAATTGTCCGGGAGCTGACTCAGGAG
CGGCCCTACTTTCAGTTTCTCTCCGAAAAAGCCGTGACGGTGCTTGACGA
CACTTATCTAAGCTTGAAAGAGTCCTGGACCGCCCCATCGCCTTCCGACT
TTCGCAAAAGTGCCAAAAACTTAAATTTTGTCAAGGGTACTCGGCAAAGA
ATTGTTGTTCTGGGGACAGGATGGGGCGCTCATGCGTTCTTGCAGTCAGT
CGATGCCCTGAAATACGAGGTGGTTGTGGTAAGCCCCCGGAATTTCATGC
TATTTACTCCCATGCTTGCGGGCTCAGCGGTGGGTACAGTAGAGTTTTTG
AGCATTACGGAGCCGATTCGAAATGTGAATCCGTATGCGGATTATTTGGA
AGCGACTTGCACGGGTGTGAACGCGGCCAAGAAGAGCATTACGTGTCAGT
CGGTTATCTGTGAAGGAAACAGCTGCGACATCGAGGAGTTCGAATTGTCT
TATGACATGCTGTTGGTGGCGGTCGGGGCGACTACCAACACGTATGGTAT
TCCGGGGGTGAAGGAGCACTGCCACTTTCTCAAGCAGATCAATGACGCCG
TCAAGCTGCGGACGTCGATCGGCAATGCCTTTGAACGCGCCAACCTGCCT
GGGCTAACTGATGCACAGCGCAAGCAAGCCCTGACATTCGTCGTAGTCGG
CGCGGGGCCGACCGGTGTGGAGTTTACGGCGGAGCTGAGGGACTTTGTGG
AGGATGATGTGCCGAAGTTTTATCCACATTTGCTGCCCTTCGTGAGGATA
AAGTTGGTGGAAGCGAGCGATCGCGTTCTCATGATGTTCGACGGGGCGCT
CCAAGCAGAGGCCATCAAGAGACTTACCGAGGCCCCTCAAAAACTGGTCG
AGCGAGGACTAATCTCCAAGGACATGACCCAGGTGTTATTGAAAGTAGGG
GTGAAAGAGGTGAGGAACCGCGAGATCGTCTTGTCGGACAACAGTACCAT
TCCCTACGGCCTGGCTGTGTGGGCGGCAGGCAACGGTCCCTTGCCTCTGG
TGCTGAATCTCATTAAGCAATCTCCAGAGCAAGAGGAGAAGCAGGGTTTT
GGGCGGGGAAGGCTTGTGACGGACGAGTGGATGCGGGTTAAGGGCGTGGA
TGGTGTTTTTTCGATCGGCGACTGCTGTGTGATCGATGATAAGCCTCTGC
CGGCGAACGCCCAGGCGGCCTCGCAACAAGGTTATTTCCTCGGGCGGCAA
CTTAGCAAGAATATTGATTTTTCACGACCCATCCCGGAAAGGGTTGGCCC
CGTGACGACTCCTGGGGAGTTTCTCTCCGTGGGAGAGAAGAGGGAGAATG
GTAAGATTTACGCAAAAGGATTTCAATTTTTGAATTTGGGGACGTTGGCG
TACACGGGAGGGGATAGTGCCTTGGCTCAGATTGCGGTAGATAAGGCGGC
GATCAAGTCGAGTGGAGAAGCAGGCTTTTTGTTGTGGCGGTCAGTGTACT
TGTCGAAGCAGGTGAGTTTGCGGAATCGCGCGTTGGTGTTTTTTGATTGG
GTCAAGAGCAGGTTGTGGGGGCGGGACCTTACTAGATTTAACGAGACGTA
G

Synonyms

Publications