jgi.p|Nanoce1779_2|571895, mRNA_1371 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|571895
Unique Name	mRNA_1371
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1902
Alignment location	scaffold_1:405672..407844 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	571981
Track	FilteredModels2
ProteinId	571895

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:405672..407844 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|571895	gene_1371	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|571895	mRNA_1371-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1371	CDS_1371	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:405672..407844+
coding sequence from alignment at scaffold_1:405672..407844+

mRNA sequence

>mRNA_1371 ID=mRNA_1371|Name=jgi.p|Nanoce1779_2|571895|organism=Nannochloropsis oceanica|type=mRNA|length=1902bp
CAGAGAACACAGGAGGCACAAGTCACCCCAATCACTCGGCTCACCCCGCC
CTCCCTATTCCAGCACGATTCGATGCTGGAAAGTTTATTGGAAACGCTGG
AGGCTCTGCGTCACGACAAGACAGCAGCCACCATCTTCGTGGCAACGGTT
GTAGTGACCATTACCTTTTTCTACTGGATTACTAAAGATCCTCCTTTGCC
CAAGGGCCCGGGGGGCAAGGATGCCGGAGAGGAGCCTGACCCTCCGCGCA
ACTTCACTGCTGCTCAGCTCCGTGAGTTCACGGGGGCTACAAAGGATGAG
CCAATTTATGTGGCATTGCAAGGAGAGGTGTACGATGTGTCGTCAGGGCG
GGATTTCTACGGTCCCGAGGGAGTTTACGGAGGGTTTGCTGGGCATGACG
TGACGAGGGCGTTCGCGCTCAATTCGTTGGAGGAAAAAGATTTAGACAAC
CCCAACCTGGATGACCTCCCTTATTCCGCTAAAGAATCTCTGCACGGCTG
GGTGGAGAAATACAAGTATTATAAGTGCTACCCCGTCGTCGGTCGCCTCG
TCACCCCTCCTTTAGGACTCAAACTCACCACCGCGGAGCTCGCCAAACAC
AAGGGGGACGAAGAGAAGGAGGGCATGCCGGAAGGTTGGGCAGCAGCGCC
GATTTATGTGGCCGTGAAGGGGAATGTGTTTGATATGTCCTTTGGTGGGA
GATTGTTTTATGGTCCTGGAGGACCCTACCATTTCCTGGCAGGGAAGGAC
GGGTCGCGGCCGTTGGCAAAGATGTCCTTTGAGAAAGCCGATGCCGAGAG
CCGGGACCTCTCCGACCTCACAGACCGGCAACGGCAGACGTTGGACGAGT
GGGTGGAGAAATTCAGGAATGATCGTAAATACCCGGTGGTGGGGACGCTT
GTCGATTAGATACAAAACATGAACCAAGAGGGGAGGGAGGGAAGAGATGA
CGGGGTGTAAAATTTGGTAGGCACGTGCAAGACACAGAGAAAGCGTAAGA
ACGTCAACAAGAATGAATATGTTGCTGGCGCAATTCCCCTCGAGTCGTGA
TTTTAACGTAGAGACGTACGGCACGAAAGAAAGCGATTTTAAAAAACAGA
ACAAAAAACCTGCAATTAGTGGCTTGATACCTTCAAGCCTTCTGAGCACG
GATATTGAGTGAAAAATTGTTATTACTGATTGTCTCTGTATTCAGAGAAA
GGCATTATTTACAGTTAGTCCTATGCATAGGAAGCATTCCAGTCAAGACC
CACCAGTTCCTTCAGAGACGGCCAGCAGAGCCCGCCATAGCCGAGTCCGC
GTCGCCATAGTCTCTGTGAAGGCTTAGCTTTGTGACTTATGTCCCGTAAA
AGGTGACGGATTTCTTGCACTGAAAACTTTGTGCGTGACTCTGTGAGAAT
GTATCACGGCCATAGATGGTCACAAGGCACTGGTTTACTGCGGTTACCGC
GTCCCCTCAGTGATGTGCAATGAGGCCCGCTCCGAGGAGGGAACTCTACC
ATGTTTACCCATCATGGGTTTCGACCGTACGGACACCATGGCACGAACCA
TTTTGAGACCACATTTCTTCCGAATTTCATCATCGAATTCAGTCCCAGCT
CGCACCTTGCCATATCTCGCGCACCATGGCAGGGGGCCTGACCTCGTCTT
GTCGGGCAACGGCCCATTGGTAACTGATCCGGCGCTAAAAAGTCGTCCCC
GTCGGCGACGACGCTGACTCCAGCAAAACGAAGATCAGAGCTAGCCCCAA
GTTCCCCTCACCTAAGCTTATGCCCAGACTATCCACTTTCAACTGACTGA
CTAACACTCTCAAACCTGTTCTCTATCAGAGGGCCGCCGCAGGGACGCGT
TTCCAGCTACCCAAAAGCGGTCTACGTGGTCGGTCTTCAGCCGAGCCTGC
GC

protein sequence of jgi.p|Nanoce1779_2|571895

>mRNA_1371-protein ID=mRNA_1371-protein|Name=jgi.p|Nanoce1779_2|571895|organism=Nannochloropsis oceanica|type=polypeptide|length=279bp
MLESLLETLEALRHDKTAATIFVATVVVTITFFYWITKDPPLPKGPGGKD
AGEEPDPPRNFTAAQLREFTGATKDEPIYVALQGEVYDVSSGRDFYGPEG
VYGGFAGHDVTRAFALNSLEEKDLDNPNLDDLPYSAKESLHGWVEKYKYY
KCYPVVGRLVTPPLGLKLTTAELAKHKGDEEKEGMPEGWAAAPIYVAVKG
NVFDMSFGGRLFYGPGGPYHFLAGKDGSRPLAKMSFEKADAESRDLSDLT
DRQRQTLDEWVEKFRNDRKYPVVGTLVD*

mRNA from alignment at scaffold_1:405672..407844+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1371 ID=mRNA_1371|Name=jgi.p|Nanoce1779_2|571895|organism=Nannochloropsis oceanica|type=mRNA|length=2173bp|location=Sequence derived from alignment at scaffold_1:405672..407844+ (Nannochloropsis oceanica)
CAGAGAACACAGGAGGCACAAGTCACCCCAATCACTCGGCTCACCCCGCC
CTCCCTATTCCAGCACGATTCGATGCTGGAAAGTTTATTGGAAACGCTGG
AGGCTCTGCGTCACGACAAGACAGCAGCCACCATCTTCGTGGCAACGGTT
GTAGTGACCATTACCTTTTTCTACTGGATTACTAAAGATCCTCCTTTGCC
CAAGGGCCCGGGGGGCAAGGATGCCGGAGAGGAGCCTGACCCTCCGCGCA
ACTTCACTGCTGCTCAGCTCCGTGAGTTCACGGGGGCTACAAAGGATGAG
CCAATTTATGTGGCATTGCAAGGAGAGGTGTACGATGTGTCGTCAGGGCG
GGATTTCTACGGTCCCGAGGGAGTTTACGGAGGGTTTGCTGGGCATGACG
TGACGAGGGCGTTCGCGCTCAATTCGTTGGAGGAAAAAGATTTAGACAAC
CCCAAGTAAGTGAAAGAGGGAACGAGAGGAGGCTTTGGGTGGTAATCGTG
CGTTGTAATGACATAAATCCCCTTGAGAGGTGTCTCTCGTTTCTCCTGAC
TCACGCCCTCCCTCCCTCTCTCCCCTCCGCCTTCATCCTTCCCCTTTCAC
CATCAACAGCCTGGATGACCTCCCTTATTCCGCTAAAGAATCTCTGCACG
GCTGGGTGGAGAAATACAAGTATTATAAGTGCTACCCCGTCGTCGGTCGC
CTCGTCACCCCTCCTTTAGGACTCAAACTCACCACCGCGGAGCTCGCCAA
ACACAAGGGGGACGAAGAGAAGGAGGGCATGCCGGAAGGTTGGGCAGCAG
CGCCGATTTATGTGGCCGTGAAGGGGAATGTGTTTGATATGTCCTTTGGT
GGGAGATTGTTTTATGGTCCTGGAGGACCCTACCATTTCCTGGCAGGGAA
GGACGGGTCGCGGCCGTTGGCAAAGGTTAGGAAGGGCAATCTCTCGTACT
TACCGCTCTCTTCGTTTCATACACACACTACCCCCCCCCCTCTGCCCCCA
AAACACACACACGTACATACATACACACACACGCACCGATAGATGTCCTT
TGAGAAAGCCGATGCCGAGAGCCGGGACCTCTCCGACCTCACAGACCGGC
AACGGCAGACGTTGGACGAGTGGGTGGAGAAATTCAGGAATGATCGTAAA
TACCCGGTGGTGGGGACGCTTGTCGATTAGATACAAAACATGAACCAAGA
GGGGAGGGAGGGAAGAGATGACGGGGTGTAAAATTTGGTAGGCACGTGCA
AGACACAGAGAAAGCGTAAGAACGTCAACAAGAATGAATATGTTGCTGGC
GCAATTCCCCTCGAGTCGTGATTTTAACGTAGAGACGTACGGCACGAAAG
AAAGCGATTTTAAAAAACAGAACAAAAAACCTGCAATTAGTGGCTTGATA
CCTTCAAGCCTTCTGAGCACGGATATTGAGTGAAAAATTGTTATTACTGA
TTGTCTCTGTATTCAGAGAAAGGCATTATTTACAGTTAGTCCTATGCATA
GGAAGCATTCCAGTCAAGACCCACCAGTTCCTTCAGAGACGGCCAGCAGA
GCCCGCCATAGCCGAGTCCGCGTCGCCATAGTCTCTGTGAAGGCTTAGCT
TTGTGACTTATGTCCCGTAAAAGGTGACGGATTTCTTGCACTGAAAACTT
TGTGCGTGACTCTGTGAGAATGTATCACGGCCATAGATGGTCACAAGGCA
CTGGTTTACTGCGGTTACCGCGTCCCCTCAGTGATGTGCAATGAGGCCCG
CTCCGAGGAGGGAACTCTACCATGTTTACCCATCATGGGTTTCGACCGTA
CGGACACCATGGCACGAACCATTTTGAGACCACATTTCTTCCGAATTTCA
TCATCGAATTCAGTCCCAGCTCGCACCTTGCCATATCTCGCGCACCATGG
CAGGGGGCCTGACCTCGTCTTGTCGGGCAACGGCCCATTGGTAACTGATC
CGGCGCTAAAAAGTCGTCCCCGTCGGCGACGACGCTGACTCCAGCAAAAC
GAAGATCAGAGCTAGCCCCAAGTTCCCCTCACCTAAGCTTATGCCCAGAC
TATCCACTTTCAACTGACTGACTAACACTCTCAAACCTGTTCTCTATCAG
AGGGCCGCCGCAGGGACGCGTTTCCAGCTACCCAAAAGCGGTCTACGTGG
TCGGTCTTCAGCCGAGCCTGCGC

Coding sequence (CDS) from alignment at scaffold_1:405672..407844+

>mRNA_1371 ID=mRNA_1371|Name=jgi.p|Nanoce1779_2|571895|organism=Nannochloropsis oceanica|type=CDS|length=2511bp|location=Sequence derived from alignment at scaffold_1:405672..407844+ (Nannochloropsis oceanica)
ATGCTGGAAAGTTTATTGGAAACGCTGGAGGCTCTGCGTCACGACAAGAC
AGCAGCCACCATCTTCGTGGCAACGGTTGTAGTGACCATTACCTTTTTCT
ACTGGATTACTAAAGATCCTCCTTTGCCCAAGGGCCCGGGGGGCAAGGAT
GCCGGAGAGGAGCCTGACCCTCCGCGCAACTTCACTGCTGCTCAGCTCCG
TGAGTTCACGGGGGCTACAAAGGATGAGCCAATTTATGTGGCATTGCAAG
GAGAGGTGTACGATGTGTCGTCAGGGCGGGATTTCTACGGTCCCGAGGGA
GTTTACGGAGGGTTTGCTGGGCATGACGTGACGAGGGCGTTCGCGCTCAA
TTCGTTGGAGGAAAAAGATTTAGACAACCCCAACCTGGATGACCTCCCTT
ATTCCGCTAAAGAATCTCTGCACGGCTGGGTGGAGAAATACAAGTATTAT
AAGTGCTACCCCGTCGTCGGTCGCCTCGTCACCCCTCCTTTAGGACTCAA
ACTCACCACCGCGGAGCTCGCCAAACACAAGGGGGACGAAGAGAAGGAGG
GCATGCCGGAAGGTTGGGCAGCAGCGCCGATTTATGTGGCCGTGAAGGGG
AATGTGTTTGATATGTCCTTTGGTGGGAGATTGTTTTATGGTCCTGGAGG
ACCCTACCATTTCCTGGCAGGGAAGGACGGGTCGCGGCCGTTGGCAAAGA
TGTCCTTTGAGAAAGCCGATGCCGAGAGCCGGGACCTCTCCGACCTCACA
GACCGGCAACGGCAGACGTTGGACGAGTGGGTGGAGAAATTCAGGAATGA
TCGTAAATACCCGGTGGTGGGGACGCTTGTCGATTAGATGCTGGAAAGTT
TATTGGAAACGCTGGAGGCTCTGCGTCACGACAAGACAGCAGCCACCATC
TTCGTGGCAACGGTTGTAGTGACCATTACCTTTTTCTACTGGATTACTAA
AGATCCTCCTTTGCCCAAGGGCCCGGGGGGCAAGGATGCCGGAGAGGAGC
CTGACCCTCCGCGCAACTTCACTGCTGCTCAGCTCCGTGAGTTCACGGGG
GCTACAAAGGATGAGCCAATTTATGTGGCATTGCAAGGAGAGGTGTACGA
TGTGTCGTCAGGGCGGGATTTCTACGGTCCCGAGGGAGTTTACGGAGGGT
TTGCTGGGCATGACGTGACGAGGGCGTTCGCGCTCAATTCGTTGGAGGAA
AAAGATTTAGACAACCCCAACCTGGATGACCTCCCTTATTCCGCTAAAGA
ATCTCTGCACGGCTGGGTGGAGAAATACAAGTATTATAAGTGCTACCCCG
TCGTCGGTCGCCTCGTCACCCCTCCTTTAGGACTCAAACTCACCACCGCG
GAGCTCGCCAAACACAAGGGGGACGAAGAGAAGGAGGGCATGCCGGAAGG
TTGGGCAGCAGCGCCGATTTATGTGGCCGTGAAGGGGAATGTGTTTGATA
TGTCCTTTGGTGGGAGATTGTTTTATGGTCCTGGAGGACCCTACCATTTC
CTGGCAGGGAAGGACGGGTCGCGGCCGTTGGCAAAGATGTCCTTTGAGAA
AGCCGATGCCGAGAGCCGGGACCTCTCCGACCTCACAGACCGGCAACGGC
AGACGTTGGACGAGTGGGTGGAGAAATTCAGGAATGATCGTAAATACCCG
GTGGTGGGGACGCTTGTCGATTAGATGCTGGAAAGTTTATTGGAAACGCT
GGAGGCTCTGCGTCACGACAAGACAGCAGCCACCATCTTCGTGGCAACGG
TTGTAGTGACCATTACCTTTTTCTACTGGATTACTAAAGATCCTCCTTTG
CCCAAGGGCCCGGGGGGCAAGGATGCCGGAGAGGAGCCTGACCCTCCGCG
CAACTTCACTGCTGCTCAGCTCCGTGAGTTCACGGGGGCTACAAAGGATG
AGCCAATTTATGTGGCATTGCAAGGAGAGGTGTACGATGTGTCGTCAGGG
CGGGATTTCTACGGTCCCGAGGGAGTTTACGGAGGGTTTGCTGGGCATGA
CGTGACGAGGGCGTTCGCGCTCAATTCGTTGGAGGAAAAAGATTTAGACA
ACCCCAACCTGGATGACCTCCCTTATTCCGCTAAAGAATCTCTGCACGGC
TGGGTGGAGAAATACAAGTATTATAAGTGCTACCCCGTCGTCGGTCGCCT
CGTCACCCCTCCTTTAGGACTCAAACTCACCACCGCGGAGCTCGCCAAAC
ACAAGGGGGACGAAGAGAAGGAGGGCATGCCGGAAGGTTGGGCAGCAGCG
CCGATTTATGTGGCCGTGAAGGGGAATGTGTTTGATATGTCCTTTGGTGG
GAGATTGTTTTATGGTCCTGGAGGACCCTACCATTTCCTGGCAGGGAAGG
ACGGGTCGCGGCCGTTGGCAAAGATGTCCTTTGAGAAAGCCGATGCCGAG
AGCCGGGACCTCTCCGACCTCACAGACCGGCAACGGCAGACGTTGGACGA
GTGGGTGGAGAAATTCAGGAATGATCGTAAATACCCGGTGGTGGGGACGC
TTGTCGATTAG

Synonyms

Publications