|
Properties
Property Name | Value |
TranscriptId | 571981 |
Track | FilteredModels2 |
ProteinId | 571895 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_1 | supercontig | scaffold_1:405672..407844 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1371 ID=mRNA_1371|Name=jgi.p|Nanoce1779_2|571895|organism=Nannochloropsis oceanica|type=mRNA|length=1902bp CAGAGAACACAGGAGGCACAAGTCACCCCAATCACTCGGCTCACCCCGCC CTCCCTATTCCAGCACGATTCGATGCTGGAAAGTTTATTGGAAACGCTGG AGGCTCTGCGTCACGACAAGACAGCAGCCACCATCTTCGTGGCAACGGTT GTAGTGACCATTACCTTTTTCTACTGGATTACTAAAGATCCTCCTTTGCC CAAGGGCCCGGGGGGCAAGGATGCCGGAGAGGAGCCTGACCCTCCGCGCA ACTTCACTGCTGCTCAGCTCCGTGAGTTCACGGGGGCTACAAAGGATGAG CCAATTTATGTGGCATTGCAAGGAGAGGTGTACGATGTGTCGTCAGGGCG GGATTTCTACGGTCCCGAGGGAGTTTACGGAGGGTTTGCTGGGCATGACG TGACGAGGGCGTTCGCGCTCAATTCGTTGGAGGAAAAAGATTTAGACAAC CCCAACCTGGATGACCTCCCTTATTCCGCTAAAGAATCTCTGCACGGCTG GGTGGAGAAATACAAGTATTATAAGTGCTACCCCGTCGTCGGTCGCCTCG TCACCCCTCCTTTAGGACTCAAACTCACCACCGCGGAGCTCGCCAAACAC AAGGGGGACGAAGAGAAGGAGGGCATGCCGGAAGGTTGGGCAGCAGCGCC GATTTATGTGGCCGTGAAGGGGAATGTGTTTGATATGTCCTTTGGTGGGA GATTGTTTTATGGTCCTGGAGGACCCTACCATTTCCTGGCAGGGAAGGAC GGGTCGCGGCCGTTGGCAAAGATGTCCTTTGAGAAAGCCGATGCCGAGAG CCGGGACCTCTCCGACCTCACAGACCGGCAACGGCAGACGTTGGACGAGT GGGTGGAGAAATTCAGGAATGATCGTAAATACCCGGTGGTGGGGACGCTT GTCGATTAGATACAAAACATGAACCAAGAGGGGAGGGAGGGAAGAGATGA CGGGGTGTAAAATTTGGTAGGCACGTGCAAGACACAGAGAAAGCGTAAGA ACGTCAACAAGAATGAATATGTTGCTGGCGCAATTCCCCTCGAGTCGTGA TTTTAACGTAGAGACGTACGGCACGAAAGAAAGCGATTTTAAAAAACAGA ACAAAAAACCTGCAATTAGTGGCTTGATACCTTCAAGCCTTCTGAGCACG GATATTGAGTGAAAAATTGTTATTACTGATTGTCTCTGTATTCAGAGAAA GGCATTATTTACAGTTAGTCCTATGCATAGGAAGCATTCCAGTCAAGACC CACCAGTTCCTTCAGAGACGGCCAGCAGAGCCCGCCATAGCCGAGTCCGC GTCGCCATAGTCTCTGTGAAGGCTTAGCTTTGTGACTTATGTCCCGTAAA AGGTGACGGATTTCTTGCACTGAAAACTTTGTGCGTGACTCTGTGAGAAT GTATCACGGCCATAGATGGTCACAAGGCACTGGTTTACTGCGGTTACCGC GTCCCCTCAGTGATGTGCAATGAGGCCCGCTCCGAGGAGGGAACTCTACC ATGTTTACCCATCATGGGTTTCGACCGTACGGACACCATGGCACGAACCA TTTTGAGACCACATTTCTTCCGAATTTCATCATCGAATTCAGTCCCAGCT CGCACCTTGCCATATCTCGCGCACCATGGCAGGGGGCCTGACCTCGTCTT GTCGGGCAACGGCCCATTGGTAACTGATCCGGCGCTAAAAAGTCGTCCCC GTCGGCGACGACGCTGACTCCAGCAAAACGAAGATCAGAGCTAGCCCCAA GTTCCCCTCACCTAAGCTTATGCCCAGACTATCCACTTTCAACTGACTGA CTAACACTCTCAAACCTGTTCTCTATCAGAGGGCCGCCGCAGGGACGCGT TTCCAGCTACCCAAAAGCGGTCTACGTGGTCGGTCTTCAGCCGAGCCTGC GC back to topprotein sequence of jgi.p|Nanoce1779_2|571895 >mRNA_1371-protein ID=mRNA_1371-protein|Name=jgi.p|Nanoce1779_2|571895|organism=Nannochloropsis oceanica|type=polypeptide|length=279bp MLESLLETLEALRHDKTAATIFVATVVVTITFFYWITKDPPLPKGPGGKD AGEEPDPPRNFTAAQLREFTGATKDEPIYVALQGEVYDVSSGRDFYGPEG VYGGFAGHDVTRAFALNSLEEKDLDNPNLDDLPYSAKESLHGWVEKYKYY KCYPVVGRLVTPPLGLKLTTAELAKHKGDEEKEGMPEGWAAAPIYVAVKG NVFDMSFGGRLFYGPGGPYHFLAGKDGSRPLAKMSFEKADAESRDLSDLT DRQRQTLDEWVEKFRNDRKYPVVGTLVD* back to topmRNA from alignment at scaffold_1:405672..407844+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1371 ID=mRNA_1371|Name=jgi.p|Nanoce1779_2|571895|organism=Nannochloropsis oceanica|type=mRNA|length=2173bp|location=Sequence derived from alignment at scaffold_1:405672..407844+ (Nannochloropsis oceanica) CAGAGAACACAGGAGGCACAAGTCACCCCAATCACTCGGCTCACCCCGCC
CTCCCTATTCCAGCACGATTCGATGCTGGAAAGTTTATTGGAAACGCTGG
AGGCTCTGCGTCACGACAAGACAGCAGCCACCATCTTCGTGGCAACGGTT
GTAGTGACCATTACCTTTTTCTACTGGATTACTAAAGATCCTCCTTTGCC
CAAGGGCCCGGGGGGCAAGGATGCCGGAGAGGAGCCTGACCCTCCGCGCA
ACTTCACTGCTGCTCAGCTCCGTGAGTTCACGGGGGCTACAAAGGATGAG
CCAATTTATGTGGCATTGCAAGGAGAGGTGTACGATGTGTCGTCAGGGCG
GGATTTCTACGGTCCCGAGGGAGTTTACGGAGGGTTTGCTGGGCATGACG
TGACGAGGGCGTTCGCGCTCAATTCGTTGGAGGAAAAAGATTTAGACAAC
CCCAAGTAAGTGAAAGAGGGAACGAGAGGAGGCTTTGGGTGGTAATCGTG
CGTTGTAATGACATAAATCCCCTTGAGAGGTGTCTCTCGTTTCTCCTGAC
TCACGCCCTCCCTCCCTCTCTCCCCTCCGCCTTCATCCTTCCCCTTTCAC
CATCAACAGCCTGGATGACCTCCCTTATTCCGCTAAAGAATCTCTGCACG
GCTGGGTGGAGAAATACAAGTATTATAAGTGCTACCCCGTCGTCGGTCGC
CTCGTCACCCCTCCTTTAGGACTCAAACTCACCACCGCGGAGCTCGCCAA
ACACAAGGGGGACGAAGAGAAGGAGGGCATGCCGGAAGGTTGGGCAGCAG
CGCCGATTTATGTGGCCGTGAAGGGGAATGTGTTTGATATGTCCTTTGGT
GGGAGATTGTTTTATGGTCCTGGAGGACCCTACCATTTCCTGGCAGGGAA
GGACGGGTCGCGGCCGTTGGCAAAGGTTAGGAAGGGCAATCTCTCGTACT
TACCGCTCTCTTCGTTTCATACACACACTACCCCCCCCCCTCTGCCCCCA
AAACACACACACGTACATACATACACACACACGCACCGATAGATGTCCTT
TGAGAAAGCCGATGCCGAGAGCCGGGACCTCTCCGACCTCACAGACCGGC
AACGGCAGACGTTGGACGAGTGGGTGGAGAAATTCAGGAATGATCGTAAA
TACCCGGTGGTGGGGACGCTTGTCGATTAGATACAAAACATGAACCAAGA
GGGGAGGGAGGGAAGAGATGACGGGGTGTAAAATTTGGTAGGCACGTGCA
AGACACAGAGAAAGCGTAAGAACGTCAACAAGAATGAATATGTTGCTGGC
GCAATTCCCCTCGAGTCGTGATTTTAACGTAGAGACGTACGGCACGAAAG
AAAGCGATTTTAAAAAACAGAACAAAAAACCTGCAATTAGTGGCTTGATA
CCTTCAAGCCTTCTGAGCACGGATATTGAGTGAAAAATTGTTATTACTGA
TTGTCTCTGTATTCAGAGAAAGGCATTATTTACAGTTAGTCCTATGCATA
GGAAGCATTCCAGTCAAGACCCACCAGTTCCTTCAGAGACGGCCAGCAGA
GCCCGCCATAGCCGAGTCCGCGTCGCCATAGTCTCTGTGAAGGCTTAGCT
TTGTGACTTATGTCCCGTAAAAGGTGACGGATTTCTTGCACTGAAAACTT
TGTGCGTGACTCTGTGAGAATGTATCACGGCCATAGATGGTCACAAGGCA
CTGGTTTACTGCGGTTACCGCGTCCCCTCAGTGATGTGCAATGAGGCCCG
CTCCGAGGAGGGAACTCTACCATGTTTACCCATCATGGGTTTCGACCGTA
CGGACACCATGGCACGAACCATTTTGAGACCACATTTCTTCCGAATTTCA
TCATCGAATTCAGTCCCAGCTCGCACCTTGCCATATCTCGCGCACCATGG
CAGGGGGCCTGACCTCGTCTTGTCGGGCAACGGCCCATTGGTAACTGATC
CGGCGCTAAAAAGTCGTCCCCGTCGGCGACGACGCTGACTCCAGCAAAAC
GAAGATCAGAGCTAGCCCCAAGTTCCCCTCACCTAAGCTTATGCCCAGAC
TATCCACTTTCAACTGACTGACTAACACTCTCAAACCTGTTCTCTATCAG
AGGGCCGCCGCAGGGACGCGTTTCCAGCTACCCAAAAGCGGTCTACGTGG
TCGGTCTTCAGCCGAGCCTGCGC back to topCoding sequence (CDS) from alignment at scaffold_1:405672..407844+ >mRNA_1371 ID=mRNA_1371|Name=jgi.p|Nanoce1779_2|571895|organism=Nannochloropsis oceanica|type=CDS|length=2511bp|location=Sequence derived from alignment at scaffold_1:405672..407844+ (Nannochloropsis oceanica) ATGCTGGAAAGTTTATTGGAAACGCTGGAGGCTCTGCGTCACGACAAGAC AGCAGCCACCATCTTCGTGGCAACGGTTGTAGTGACCATTACCTTTTTCT ACTGGATTACTAAAGATCCTCCTTTGCCCAAGGGCCCGGGGGGCAAGGAT GCCGGAGAGGAGCCTGACCCTCCGCGCAACTTCACTGCTGCTCAGCTCCG TGAGTTCACGGGGGCTACAAAGGATGAGCCAATTTATGTGGCATTGCAAG GAGAGGTGTACGATGTGTCGTCAGGGCGGGATTTCTACGGTCCCGAGGGA GTTTACGGAGGGTTTGCTGGGCATGACGTGACGAGGGCGTTCGCGCTCAA TTCGTTGGAGGAAAAAGATTTAGACAACCCCAACCTGGATGACCTCCCTT ATTCCGCTAAAGAATCTCTGCACGGCTGGGTGGAGAAATACAAGTATTAT AAGTGCTACCCCGTCGTCGGTCGCCTCGTCACCCCTCCTTTAGGACTCAA ACTCACCACCGCGGAGCTCGCCAAACACAAGGGGGACGAAGAGAAGGAGG GCATGCCGGAAGGTTGGGCAGCAGCGCCGATTTATGTGGCCGTGAAGGGG AATGTGTTTGATATGTCCTTTGGTGGGAGATTGTTTTATGGTCCTGGAGG ACCCTACCATTTCCTGGCAGGGAAGGACGGGTCGCGGCCGTTGGCAAAGA TGTCCTTTGAGAAAGCCGATGCCGAGAGCCGGGACCTCTCCGACCTCACA GACCGGCAACGGCAGACGTTGGACGAGTGGGTGGAGAAATTCAGGAATGA TCGTAAATACCCGGTGGTGGGGACGCTTGTCGATTAGATGCTGGAAAGTT TATTGGAAACGCTGGAGGCTCTGCGTCACGACAAGACAGCAGCCACCATC TTCGTGGCAACGGTTGTAGTGACCATTACCTTTTTCTACTGGATTACTAA AGATCCTCCTTTGCCCAAGGGCCCGGGGGGCAAGGATGCCGGAGAGGAGC CTGACCCTCCGCGCAACTTCACTGCTGCTCAGCTCCGTGAGTTCACGGGG GCTACAAAGGATGAGCCAATTTATGTGGCATTGCAAGGAGAGGTGTACGA TGTGTCGTCAGGGCGGGATTTCTACGGTCCCGAGGGAGTTTACGGAGGGT TTGCTGGGCATGACGTGACGAGGGCGTTCGCGCTCAATTCGTTGGAGGAA AAAGATTTAGACAACCCCAACCTGGATGACCTCCCTTATTCCGCTAAAGA ATCTCTGCACGGCTGGGTGGAGAAATACAAGTATTATAAGTGCTACCCCG TCGTCGGTCGCCTCGTCACCCCTCCTTTAGGACTCAAACTCACCACCGCG GAGCTCGCCAAACACAAGGGGGACGAAGAGAAGGAGGGCATGCCGGAAGG TTGGGCAGCAGCGCCGATTTATGTGGCCGTGAAGGGGAATGTGTTTGATA TGTCCTTTGGTGGGAGATTGTTTTATGGTCCTGGAGGACCCTACCATTTC CTGGCAGGGAAGGACGGGTCGCGGCCGTTGGCAAAGATGTCCTTTGAGAA AGCCGATGCCGAGAGCCGGGACCTCTCCGACCTCACAGACCGGCAACGGC AGACGTTGGACGAGTGGGTGGAGAAATTCAGGAATGATCGTAAATACCCG GTGGTGGGGACGCTTGTCGATTAGATGCTGGAAAGTTTATTGGAAACGCT GGAGGCTCTGCGTCACGACAAGACAGCAGCCACCATCTTCGTGGCAACGG TTGTAGTGACCATTACCTTTTTCTACTGGATTACTAAAGATCCTCCTTTG CCCAAGGGCCCGGGGGGCAAGGATGCCGGAGAGGAGCCTGACCCTCCGCG CAACTTCACTGCTGCTCAGCTCCGTGAGTTCACGGGGGCTACAAAGGATG AGCCAATTTATGTGGCATTGCAAGGAGAGGTGTACGATGTGTCGTCAGGG CGGGATTTCTACGGTCCCGAGGGAGTTTACGGAGGGTTTGCTGGGCATGA CGTGACGAGGGCGTTCGCGCTCAATTCGTTGGAGGAAAAAGATTTAGACA ACCCCAACCTGGATGACCTCCCTTATTCCGCTAAAGAATCTCTGCACGGC TGGGTGGAGAAATACAAGTATTATAAGTGCTACCCCGTCGTCGGTCGCCT CGTCACCCCTCCTTTAGGACTCAAACTCACCACCGCGGAGCTCGCCAAAC ACAAGGGGGACGAAGAGAAGGAGGGCATGCCGGAAGGTTGGGCAGCAGCG CCGATTTATGTGGCCGTGAAGGGGAATGTGTTTGATATGTCCTTTGGTGG GAGATTGTTTTATGGTCCTGGAGGACCCTACCATTTCCTGGCAGGGAAGG ACGGGTCGCGGCCGTTGGCAAAGATGTCCTTTGAGAAAGCCGATGCCGAG AGCCGGGACCTCTCCGACCTCACAGACCGGCAACGGCAGACGTTGGACGA GTGGGTGGAGAAATTCAGGAATGATCGTAAATACCCGGTGGTGGGGACGC TTGTCGATTAG back to top
|