jgi.p|Nanoce1779_2|571893, mRNA_1370 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571893
Unique NamemRNA_1370
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1026
Alignment locationscaffold_1:403743..405439 -

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Properties
Property NameValue
TranscriptId571979
TrackFilteredModels2
ProteinId571893
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:403743..405439 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571893gene_1370Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571893mRNA_1370-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1370CDS_1370Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1370 ID=mRNA_1370|Name=jgi.p|Nanoce1779_2|571893|organism=Nannochloropsis oceanica|type=mRNA|length=1026bp
ACAGAGACACAAGGACGCTCTATCTGACCTGCCCGTCCAGGGACAACGTG
GAGGAGAAGTCAGCTCATCGTCGTCAGCGAGAACCTCCTGTCTCAAACTA
TGGCCACGCCGCCCAGTACCAGCAGCATAGGCTCTCCTACCCGCTGGCGG
CTCGAGGGTAAAACCGTGTTTATCACAGGTGGTACCAAAGGCATTGGCAA
GGCGATTGTGGAGGAATTTGGGGCGCTGGGCGCGCGCGTCTTTACCTGCG
CTCGGAGTGGGCCTGACTTGGTCGCATGTTTAAAAGAATGGACGAGCAAA
GGTTATGAGGTGGAGGGAATGGCGGTGGACTTAAGTGACAGTATTGCCCG
CCGGGCAGTGATGGAGCAGGTTGCGGGGTCGTTTGTGGGGAGGTTGGATG
TGTTGGTGAATAATGTCGGGACCAATGTCCGAAAGCCTACGGTGCAATAC
ACGCAGGAAGAGTACCACAATATAATGGATGTTAATTTACGGAGCACTTA
CCACTTGTGTCAGTTAGCGCATCCACTATTGAAGAAGGGTGGGAGTAGTT
GCGTGGTGAACGTCGGAAGTGTGGCCGGGGTGACGGCCATCAAGTCAGGC
TCTATTTATGCCATGAGCAAGGCGGCCATGGCCCAGCTGTCGAAGAATTT
GGCGTGTGAGTGGGCACCGGACGGCATTCGAGTCAACACGGTGGCGCCCT
GGTACATTGATACACCACTGGCCGCCCCGGTCCTAAGCAACCCAGTTTTT
CGAAAGGAAGTGACGGATCGAACCCCCATGAAACGTGTGGGCACCCCCGA
GGAAGTAAGCAGCCTGTGTGCCTTTTTGGCGATGCCCGGCGCCTCGTTCA
TGACGGGTCAAACAATCTGTGTCGACGGCGGATTCACAGTTAATGGCTTC
TACTAGCCAGCTAGTCATGAAAGTAAGAAAAGAGATGTGTCCGTGTACAT
GTGCGTGACAGGGACCCGCAGTATGCACCAGAAATAGCATTAGAACAACA
AAAGAAAGACAAGGAAAATGAACCAA
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protein sequence of jgi.p|Nanoce1779_2|571893

>mRNA_1370-protein ID=mRNA_1370-protein|Name=jgi.p|Nanoce1779_2|571893|organism=Nannochloropsis oceanica|type=polypeptide|length=269bp
MATPPSTSSIGSPTRWRLEGKTVFITGGTKGIGKAIVEEFGALGARVFTC
ARSGPDLVACLKEWTSKGYEVEGMAVDLSDSIARRAVMEQVAGSFVGRLD
VLVNNVGTNVRKPTVQYTQEEYHNIMDVNLRSTYHLCQLAHPLLKKGGSS
CVVNVGSVAGVTAIKSGSIYAMSKAAMAQLSKNLACEWAPDGIRVNTVAP
WYIDTPLAAPVLSNPVFRKEVTDRTPMKRVGTPEEVSSLCAFLAMPGASF
MTGQTICVDGGFTVNGFY*
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mRNA from alignment at scaffold_1:403743..405439-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1370 ID=mRNA_1370|Name=jgi.p|Nanoce1779_2|571893|organism=Nannochloropsis oceanica|type=mRNA|length=1697bp|location=Sequence derived from alignment at scaffold_1:403743..405439- (Nannochloropsis oceanica)
ACAGAGACACAAGGACGCTCTATCTGACCTGCCCGTCCAGGGACAACGTG
GAGGAGAAGTCAGCTCATCGTCGTCAGCGAGAACCTCCTGTCTCAAACTA
TGGCCACGCCGCCCAGTACCAGCAGCATAGGCTCTCCTACCCGCTGGCGG
CTCGAGGGTAAAACCGTGTTTATCACAGGTGGTACCAAAGGCATTGGCAA
GGCGATTGTGGAGGAATTTGGGGCGCTGGGCGCGCGCGTCTTTACCTGCG
CTCGGAGTGGGCCTGACTTGGTCGCATGTTTAAAAGAATGGACGAGCAAA
GGTTATGAGGTGGAGGGAATGGCGGTGGACTTAAGTGACAGTATTGCCCG
CCGGGCAGTGATGGAGCAGGTTGCGGGGTCGTTTGTGGGGAGGTTGGATG
TGTTGGTGAATAATGTCGGGACCAATGTCCGAAAGCCTACGGTGCAATAC
ACGCAGGAAGAGTACCACAATATAATGGATGTTAATTTACGGAGCACTTA
CCACTTGTGTCAGTTAGCGCATCCACTATTGAAGAAGGGTGGGAGTAGTT
GCGTGGTGAACGTCGGAAGTGTGGCCGGGGTGACGGCCATCAAGTCAGGT
ACGAGCATGTCGAGGGAGGAGTGGAGGGGGAAGGAACGGGGGGGAGGGGT
TCAACGGGGAAAAGAATGGGAGTAGATAATGGAAAGGGCGGTCTCTCGCT
GCTATTGCTTCGTGGCATTGTAGAGGAATGTTGTGTGCGAGACATCTCTC
ATTTTTGCGCACTTGAGGCCCTGAAAACGGAATAGATTTCCCGTTCATTC
CCTCGTCTCGCCTCGTCTGTCTCACACCTATTTTTACATCATTTCCCCCC
ACAAAATCAGGCTCTATTTATGCCATGAGCAAGGCGGCCATGGCCCAGCT
GTCGAAGAATTTGGCGTGTGAGTGGGCACCGGACGGCATTCGAGTCAACA
CGGTGGCGCCCTGGTAATACACAGGGAGCGGGAGGAGGGAGAGAGGGAAG
GAAGGAGGAAGAAATGAAAGCCATTGGTGTCGGTTCATGGAAAAAGGGAG
TGAGGGGAAAGAGGGAAAGGAGCTGGGATGATCGTTGTGGAGGAACATTT
TCGTATATGTGCTTTTTGGTGTTCCCGTCAATCTCAACAAAATACACTCG
TCGTCTCTTTCTTCGTCTTATCAGAAGCGTAAGCATTTCTCACTCTTTTA
CTCCTCTTGCCCACTCTCGGATCAGGTACATTGATACACCACTGGCCGCC
CCGGTCCTAAGCAACCCAGTTTTTCGAAAGGAAGTGACGGATCGAACCCC
CATGAAACGGTGCGTACGTGTCTGATATTTGGTGGGGTAGGAGGTTGGGG
TAGAGGGCAGGAGAACACTAAACGACTCCACTTTTCCAGAAAAGGCGTGG
CACGGGCATGTTGGACTCACGCACTTGCCGCCCACCACAATCCATTACTC
ATGCAGTGTGGGCACCCCCGAGGAAGTAAGCAGCCTGTGTGCCTTTTTGG
CGATGCCCGGCGCCTCGTTCATGACGGGTCAAACAATCTGTGTCGACGGC
GGATTCACAGTTAATGGCTTCTACTAGCCAGCTAGTCATGAAAGTAAGAA
AAGAGATGTGTCCGTGTACATGTGCGTGACAGGGACCCGCAGTATGCACC
AGAAATAGCATTAGAACAACAAAAGAAAGACAAGGAAAATGAACCAA
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Coding sequence (CDS) from alignment at scaffold_1:403743..405439-

>mRNA_1370 ID=mRNA_1370|Name=jgi.p|Nanoce1779_2|571893|organism=Nannochloropsis oceanica|type=CDS|length=3228bp|location=Sequence derived from alignment at scaffold_1:403743..405439- (Nannochloropsis oceanica)
TGTGGGCACCCCCGAGGAAGTAAGCAGCCTGTGTGCCTTTTTGGCGATGC
CCGGCGCCTCGTTCATGACGGGTCAAACAATCTGTGTCGACGGCGGATTC
ACAGTTAATGGCTTCTACTAGGTACATTGATACACCACTGGCCGCCCCGG
TCCTAAGCAACCCAGTTTTTCGAAAGGAAGTGACGGATCGAACCCCCATG
AAACGGCTCTATTTATGCCATGAGCAAGGCGGCCATGGCCCAGCTGTCGA
AGAATTTGGCGTGTGAGTGGGCACCGGACGGCATTCGAGTCAACACGGTG
GCGCCCTGATGGCCACGCCGCCCAGTACCAGCAGCATAGGCTCTCCTACC
CGCTGGCGGCTCGAGGGTAAAACCGTGTTTATCACAGGTGGTACCAAAGG
CATTGGCAAGGCGATTGTGGAGGAATTTGGGGCGCTGGGCGCGCGCGTCT
TTACCTGCGCTCGGAGTGGGCCTGACTTGGTCGCATGTTTAAAAGAATGG
ACGAGCAAAGGTTATGAGGTGGAGGGAATGGCGGTGGACTTAAGTGACAG
TATTGCCCGCCGGGCAGTGATGGAGCAGGTTGCGGGGTCGTTTGTGGGGA
GGTTGGATGTGTTGGTGAATAATGTCGGGACCAATGTCCGAAAGCCTACG
GTGCAATACACGCAGGAAGAGTACCACAATATAATGGATGTTAATTTACG
GAGCACTTACCACTTGTGTCAGTTAGCGCATCCACTATTGAAGAAGGGTG
GGAGTAGTTGCGTGGTGAACGTCGGAAGTGTGGCCGGGGTGACGGCCATC
AAGTCAGTGTGGGCACCCCCGAGGAAGTAAGCAGCCTGTGTGCCTTTTTG
GCGATGCCCGGCGCCTCGTTCATGACGGGTCAAACAATCTGTGTCGACGG
CGGATTCACAGTTAATGGCTTCTACTAGGTACATTGATACACCACTGGCC
GCCCCGGTCCTAAGCAACCCAGTTTTTCGAAAGGAAGTGACGGATCGAAC
CCCCATGAAACGGCTCTATTTATGCCATGAGCAAGGCGGCCATGGCCCAG
CTGTCGAAGAATTTGGCGTGTGAGTGGGCACCGGACGGCATTCGAGTCAA
CACGGTGGCGCCCTGATGGCCACGCCGCCCAGTACCAGCAGCATAGGCTC
TCCTACCCGCTGGCGGCTCGAGGGTAAAACCGTGTTTATCACAGGTGGTA
CCAAAGGCATTGGCAAGGCGATTGTGGAGGAATTTGGGGCGCTGGGCGCG
CGCGTCTTTACCTGCGCTCGGAGTGGGCCTGACTTGGTCGCATGTTTAAA
AGAATGGACGAGCAAAGGTTATGAGGTGGAGGGAATGGCGGTGGACTTAA
GTGACAGTATTGCCCGCCGGGCAGTGATGGAGCAGGTTGCGGGGTCGTTT
GTGGGGAGGTTGGATGTGTTGGTGAATAATGTCGGGACCAATGTCCGAAA
GCCTACGGTGCAATACACGCAGGAAGAGTACCACAATATAATGGATGTTA
ATTTACGGAGCACTTACCACTTGTGTCAGTTAGCGCATCCACTATTGAAG
AAGGGTGGGAGTAGTTGCGTGGTGAACGTCGGAAGTGTGGCCGGGGTGAC
GGCCATCAAGTCAGTGTGGGCACCCCCGAGGAAGTAAGCAGCCTGTGTGC
CTTTTTGGCGATGCCCGGCGCCTCGTTCATGACGGGTCAAACAATCTGTG
TCGACGGCGGATTCACAGTTAATGGCTTCTACTAGGTACATTGATACACC
ACTGGCCGCCCCGGTCCTAAGCAACCCAGTTTTTCGAAAGGAAGTGACGG
ATCGAACCCCCATGAAACGGCTCTATTTATGCCATGAGCAAGGCGGCCAT
GGCCCAGCTGTCGAAGAATTTGGCGTGTGAGTGGGCACCGGACGGCATTC
GAGTCAACACGGTGGCGCCCTGATGGCCACGCCGCCCAGTACCAGCAGCA
TAGGCTCTCCTACCCGCTGGCGGCTCGAGGGTAAAACCGTGTTTATCACA
GGTGGTACCAAAGGCATTGGCAAGGCGATTGTGGAGGAATTTGGGGCGCT
GGGCGCGCGCGTCTTTACCTGCGCTCGGAGTGGGCCTGACTTGGTCGCAT
GTTTAAAAGAATGGACGAGCAAAGGTTATGAGGTGGAGGGAATGGCGGTG
GACTTAAGTGACAGTATTGCCCGCCGGGCAGTGATGGAGCAGGTTGCGGG
GTCGTTTGTGGGGAGGTTGGATGTGTTGGTGAATAATGTCGGGACCAATG
TCCGAAAGCCTACGGTGCAATACACGCAGGAAGAGTACCACAATATAATG
GATGTTAATTTACGGAGCACTTACCACTTGTGTCAGTTAGCGCATCCACT
ATTGAAGAAGGGTGGGAGTAGTTGCGTGGTGAACGTCGGAAGTGTGGCCG
GGGTGACGGCCATCAAGTCAGTGTGGGCACCCCCGAGGAAGTAAGCAGCC
TGTGTGCCTTTTTGGCGATGCCCGGCGCCTCGTTCATGACGGGTCAAACA
ATCTGTGTCGACGGCGGATTCACAGTTAATGGCTTCTACTAGGTACATTG
ATACACCACTGGCCGCCCCGGTCCTAAGCAACCCAGTTTTTCGAAAGGAA
GTGACGGATCGAACCCCCATGAAACGGCTCTATTTATGCCATGAGCAAGG
CGGCCATGGCCCAGCTGTCGAAGAATTTGGCGTGTGAGTGGGCACCGGAC
GGCATTCGAGTCAACACGGTGGCGCCCTGATGGCCACGCCGCCCAGTACC
AGCAGCATAGGCTCTCCTACCCGCTGGCGGCTCGAGGGTAAAACCGTGTT
TATCACAGGTGGTACCAAAGGCATTGGCAAGGCGATTGTGGAGGAATTTG
GGGCGCTGGGCGCGCGCGTCTTTACCTGCGCTCGGAGTGGGCCTGACTTG
GTCGCATGTTTAAAAGAATGGACGAGCAAAGGTTATGAGGTGGAGGGAAT
GGCGGTGGACTTAAGTGACAGTATTGCCCGCCGGGCAGTGATGGAGCAGG
TTGCGGGGTCGTTTGTGGGGAGGTTGGATGTGTTGGTGAATAATGTCGGG
ACCAATGTCCGAAAGCCTACGGTGCAATACACGCAGGAAGAGTACCACAA
TATAATGGATGTTAATTTACGGAGCACTTACCACTTGTGTCAGTTAGCGC
ATCCACTATTGAAGAAGGGTGGGAGTAGTTGCGTGGTGAACGTCGGAAGT
GTGGCCGGGGTGACGGCCATCAAGTCAG
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Synonyms
Publications