jgi.p|Nanoce1779_2|576342, mRNA_137 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576342
Unique Name	mRNA_137
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2610
Alignment location	scaffold_3:357635..360244 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	576428
Track	FilteredModels2
ProteinId	576342

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:357635..360244 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576342	gene_137	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576342	mRNA_137-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_137	CDS_137	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:357635..360244-
coding sequence from alignment at scaffold_3:357635..360244-

mRNA sequence

>mRNA_137 ID=mRNA_137|Name=jgi.p|Nanoce1779_2|576342|organism=Nannochloropsis oceanica|type=mRNA|length=2610bp
ACAGCCTCGACCAACCTCCTGCTTCCATGCCCGACGCCGGGGGCCACAGT
CCCTGCGCACATGCTTTCAGGTCTATGCCGGCTTGGAGGGCGCCTAAATG
AACCCCATCGCGGTTGCACTTTTGTGGTCCTTATACTTGCAGCATGTATA
CGCCCAGGAAATGGACAGGAAGCCCTTTGCACAGTGGCCTATAGGTGGCA
GGGACGAGCAAGTGGAAGGATGTTTCAATAATTTCGACGCCCAAATTTCC
ATTTTACTTCGGCCCGAAGATCTGAGCAACCTGCGGTGTCAAGCACTTTG
CACCGAACAGGGTTATGCCTTGGCTGCCACTGGCGGGGGAGCCAGCAGCA
CGTGCTGGTGCGGAAACAACCATCCGGGCTCGCTGCACGCGGTAGCAAAT
GGCCAGTGTAACCGTCCGTGTAGTCCGGACAGAAAATCTTGCTACCTCTT
CACGTGTTGTGGAAACCAAAATGGTACGCTCTATACTGTGAGCTGGAACG
GGGAGGCGAACCCCCTTAAACAGCTTTTGCGGCGCTTGACTCACGATTAC
CGCAACAACTCTGCATTTCGTCGCCGAATCGAGGAAATATACCTTGCAGG
CGGAGAGCGGGCATCTTTGCGGCTTCAAGAGCCGGAACACGGAGCGGAAG
GCACACCCTTGTACCTTAGCGTTGGCAACGGCTGCCCAGTGGGTTGGTGT
ATGTACAGGGGTTATTGCTACAAGCAACACTGGGCGGAGCCCTCCACCTA
CGACGAGGCCTGCGCAAAGTGTCAATCAGAGGGAGCCGATCTGGTGTTTA
TCATGAGCATTAGTGAAAATGACTTTGTACAAGATCTGTACGGCGGCTGT
CAAGGATGGCTGCACAACCGTTCGTCTCTGTCGGGTAAGCATACTTCTAC
CAGCCCCGTGAGTCACAAATGCCTGCAACTGGCGCGTGACGGCACGTGGA
TAAACAAATCCTGCCAAGGAGATGAAGATAATAAAGAGGAGGAGGAGCGT
GCTTCCTGCTTTGCCTGCAAGAAAATTTGCGCATCTCCCTCTCCCTCCCT
CCGCCCCCTCGCAGCCGAGGAGTGGGCAATCGAATTAGTGACGCCTACCT
CCTCCGTGTACCATTGGTGCACAGACTGTCATGATACTTTCCTCAAAAGC
ATCCATTCCAGCCAGTACCTCTGTGCAGATGACCAACACCGGCCATATAT
GAAGTGGGAACGTGACATAACCTGGTGCTTGTGGACCTTAGTAGTCGACC
CAGAGTCCGGGGCTGTCGTACTGCTCACACCCCACGGCACTGCCTTAACT
TACGATAAAGAGACGAGCGCTTTGGTATGTCGGCTGCTGCAATGGTCTTA
TAAGACACCGCCGCCGCCAGATACGGTAACACAACTGTTTTCAGAAGCAG
GCGTGAAGGCCCCACAAGGCACCGTTGTCTTAAACCCAAGCAGCCTGCCA
TTCGTCATCGTTGAGCGCTATTTACGCGTAACCATCCACAGTATCAACCG
GAGGCCAGGAGCTTCTGGGTTCGCCAGTAGTGGGAGTAGGAATGGACCTC
TGAGAGAATGCTCCATGGCAGTCTGTGACACGAGCTCCCGGAGCGAGTCC
TTCGGCTGCCGTCCCGTTTCTGGGCCTGGTGCCGGTTACACGCCCCTGGT
CTTTAATCAAGTGGCCTTGCGCGTCTTTGATCAGAGCTCGTACGTCTCGG
CGCGCCAGCCCTTGCCCAACGGGCGGCTAACCTGCTTGAATCAAAACCCT
ACCGAGACTGTAAATTGCGTCTTTGCCTACGGCGAGTCCTTCATCCTCGT
CCGTCGCTTTCGGGCTTATTGGGGAGTACAGCTTTTCGATACTCTCTCCA
AGCTCTTCGAAGCGACACAAGTTGACGATCTAACAGTGCAATACCAGGGA
GCGAGGCGGACAGGCAGGGACCGGACCGGAGATGCGAGTATTGGTGAAGT
GGTAAAACCAGGAATGGGCAATCACATATATTATAATAGGGAAGTAGCTG
CGGGTGGAGTAAGAGGAGCGAGAGGAAGGGCTGGAGGTGGGACCACCGAT
GGTGGAGTTACTAGAGCAAGAGAATTCGGTAGACCAAATCGAGTACAGTT
AATGAACCGGAACAGTAAGCTGGTCCAGAATGCGTTGACGGGAGCCTTTG
ATACATTTTACCAGATTATTAATCTAAAGCTCCTAGTGGAGGTACGAAAC
TGGCAGCTGGGCCTCAATGTCGTGCCACAGACGGCGCTCACCATTCAGTA
TTGGCTCACGACGCATTACCTCAAGTACCGGTGGCGCGCAGTCTTTCAAC
CACAGGGTGGGTTCGTGCTCACTTTGTTTGGGAGGCAGATAGGTGGAGAT
GACGGATGCATTTTTTCCTTGGGCGATTTGTCCGCAGCCCAGGATTTGTT
GTTTTCTATGTACGGTACCTACGAGGAGCCAATCGATGCGGGCGTGACGA
TGACAGATATAGAACACATTGAATTATCTTACCTGGGTCTGCCAGTGCAG
CCCTGGACCGATGAGGGACTCTAGGAGGACGTAAAATGATGGGCCACGAT
TTCAAGGAGTGGGTTGAAAGCAAACAAAAAAAAAGAATCATGCGATGGTA
GATATTCAGG

protein sequence of jgi.p|Nanoce1779_2|576342

>mRNA_137-protein ID=mRNA_137-protein|Name=jgi.p|Nanoce1779_2|576342|organism=Nannochloropsis oceanica|type=polypeptide|length=809bp
MNPIAVALLWSLYLQHVYAQEMDRKPFAQWPIGGRDEQVEGCFNNFDAQI
SILLRPEDLSNLRCQALCTEQGYALAATGGGASSTCWCGNNHPGSLHAVA
NGQCNRPCSPDRKSCYLFTCCGNQNGTLYTVSWNGEANPLKQLLRRLTHD
YRNNSAFRRRIEEIYLAGGERASLRLQEPEHGAEGTPLYLSVGNGCPVGW
CMYRGYCYKQHWAEPSTYDEACAKCQSEGADLVFIMSISENDFVQDLYGG
CQGWLHNRSSLSGKHTSTSPVSHKCLQLARDGTWINKSCQGDEDNKEEEE
RASCFACKKICASPSPSLRPLAAEEWAIELVTPTSSVYHWCTDCHDTFLK
SIHSSQYLCADDQHRPYMKWERDITWCLWTLVVDPESGAVVLLTPHGTAL
TYDKETSALVCRLLQWSYKTPPPPDTVTQLFSEAGVKAPQGTVVLNPSSL
PFVIVERYLRVTIHSINRRPGASGFASSGSRNGPLRECSMAVCDTSSRSE
SFGCRPVSGPGAGYTPLVFNQVALRVFDQSSYVSARQPLPNGRLTCLNQN
PTETVNCVFAYGESFILVRRFRAYWGVQLFDTLSKLFEATQVDDLTVQYQ
GARRTGRDRTGDASIGEVVKPGMGNHIYYNREVAAGGVRGARGRAGGGTT
DGGVTRAREFGRPNRVQLMNRNSKLVQNALTGAFDTFYQIINLKLLVEVR
NWQLGLNVVPQTALTIQYWLTTHYLKYRWRAVFQPQGGFVLTLFGRQIGG
DDGCIFSLGDLSAAQDLLFSMYGTYEEPIDAGVTMTDIEHIELSYLGLPV
QPWTDEGL*

mRNA from alignment at scaffold_3:357635..360244-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_137 ID=mRNA_137|Name=jgi.p|Nanoce1779_2|576342|organism=Nannochloropsis oceanica|type=mRNA|length=2610bp|location=Sequence derived from alignment at scaffold_3:357635..360244- (Nannochloropsis oceanica)
ACAGCCTCGACCAACCTCCTGCTTCCATGCCCGACGCCGGGGGCCACAGT
CCCTGCGCACATGCTTTCAGGTCTATGCCGGCTTGGAGGGCGCCTAAATG
AACCCCATCGCGGTTGCACTTTTGTGGTCCTTATACTTGCAGCATGTATA
CGCCCAGGAAATGGACAGGAAGCCCTTTGCACAGTGGCCTATAGGTGGCA
GGGACGAGCAAGTGGAAGGATGTTTCAATAATTTCGACGCCCAAATTTCC
ATTTTACTTCGGCCCGAAGATCTGAGCAACCTGCGGTGTCAAGCACTTTG
CACCGAACAGGGTTATGCCTTGGCTGCCACTGGCGGGGGAGCCAGCAGCA
CGTGCTGGTGCGGAAACAACCATCCGGGCTCGCTGCACGCGGTAGCAAAT
GGCCAGTGTAACCGTCCGTGTAGTCCGGACAGAAAATCTTGCTACCTCTT
CACGTGTTGTGGAAACCAAAATGGTACGCTCTATACTGTGAGCTGGAACG
GGGAGGCGAACCCCCTTAAACAGCTTTTGCGGCGCTTGACTCACGATTAC
CGCAACAACTCTGCATTTCGTCGCCGAATCGAGGAAATATACCTTGCAGG
CGGAGAGCGGGCATCTTTGCGGCTTCAAGAGCCGGAACACGGAGCGGAAG
GCACACCCTTGTACCTTAGCGTTGGCAACGGCTGCCCAGTGGGTTGGTGT
ATGTACAGGGGTTATTGCTACAAGCAACACTGGGCGGAGCCCTCCACCTA
CGACGAGGCCTGCGCAAAGTGTCAATCAGAGGGAGCCGATCTGGTGTTTA
TCATGAGCATTAGTGAAAATGACTTTGTACAAGATCTGTACGGCGGCTGT
CAAGGATGGCTGCACAACCGTTCGTCTCTGTCGGGTAAGCATACTTCTAC
CAGCCCCGTGAGTCACAAATGCCTGCAACTGGCGCGTGACGGCACGTGGA
TAAACAAATCCTGCCAAGGAGATGAAGATAATAAAGAGGAGGAGGAGCGT
GCTTCCTGCTTTGCCTGCAAGAAAATTTGCGCATCTCCCTCTCCCTCCCT
CCGCCCCCTCGCAGCCGAGGAGTGGGCAATCGAATTAGTGACGCCTACCT
CCTCCGTGTACCATTGGTGCACAGACTGTCATGATACTTTCCTCAAAAGC
ATCCATTCCAGCCAGTACCTCTGTGCAGATGACCAACACCGGCCATATAT
GAAGTGGGAACGTGACATAACCTGGTGCTTGTGGACCTTAGTAGTCGACC
CAGAGTCCGGGGCTGTCGTACTGCTCACACCCCACGGCACTGCCTTAACT
TACGATAAAGAGACGAGCGCTTTGGTATGTCGGCTGCTGCAATGGTCTTA
TAAGACACCGCCGCCGCCAGATACGGTAACACAACTGTTTTCAGAAGCAG
GCGTGAAGGCCCCACAAGGCACCGTTGTCTTAAACCCAAGCAGCCTGCCA
TTCGTCATCGTTGAGCGCTATTTACGCGTAACCATCCACAGTATCAACCG
GAGGCCAGGAGCTTCTGGGTTCGCCAGTAGTGGGAGTAGGAATGGACCTC
TGAGAGAATGCTCCATGGCAGTCTGTGACACGAGCTCCCGGAGCGAGTCC
TTCGGCTGCCGTCCCGTTTCTGGGCCTGGTGCCGGTTACACGCCCCTGGT
CTTTAATCAAGTGGCCTTGCGCGTCTTTGATCAGAGCTCGTACGTCTCGG
CGCGCCAGCCCTTGCCCAACGGGCGGCTAACCTGCTTGAATCAAAACCCT
ACCGAGACTGTAAATTGCGTCTTTGCCTACGGCGAGTCCTTCATCCTCGT
CCGTCGCTTTCGGGCTTATTGGGGAGTACAGCTTTTCGATACTCTCTCCA
AGCTCTTCGAAGCGACACAAGTTGACGATCTAACAGTGCAATACCAGGGA
GCGAGGCGGACAGGCAGGGACCGGACCGGAGATGCGAGTATTGGTGAAGT
GGTAAAACCAGGAATGGGCAATCACATATATTATAATAGGGAAGTAGCTG
CGGGTGGAGTAAGAGGAGCGAGAGGAAGGGCTGGAGGTGGGACCACCGAT
GGTGGAGTTACTAGAGCAAGAGAATTCGGTAGACCAAATCGAGTACAGTT
AATGAACCGGAACAGTAAGCTGGTCCAGAATGCGTTGACGGGAGCCTTTG
ATACATTTTACCAGATTATTAATCTAAAGCTCCTAGTGGAGGTACGAAAC
TGGCAGCTGGGCCTCAATGTCGTGCCACAGACGGCGCTCACCATTCAGTA
TTGGCTCACGACGCATTACCTCAAGTACCGGTGGCGCGCAGTCTTTCAAC
CACAGGGTGGGTTCGTGCTCACTTTGTTTGGGAGGCAGATAGGTGGAGAT
GACGGATGCATTTTTTCCTTGGGCGATTTGTCCGCAGCCCAGGATTTGTT
GTTTTCTATGTACGGTACCTACGAGGAGCCAATCGATGCGGGCGTGACGA
TGACAGATATAGAACACATTGAATTATCTTACCTGGGTCTGCCAGTGCAG
CCCTGGACCGATGAGGGACTCTAGGAGGACGTAAAATGATGGGCCACGAT
TTCAAGGAGTGGGTTGAAAGCAAACAAAAAAAAAGAATCATGCGATGGTA
GATATTCAGG

Coding sequence (CDS) from alignment at scaffold_3:357635..360244-

>mRNA_137 ID=mRNA_137|Name=jgi.p|Nanoce1779_2|576342|organism=Nannochloropsis oceanica|type=CDS|length=2427bp|location=Sequence derived from alignment at scaffold_3:357635..360244- (Nannochloropsis oceanica)
ATGAACCCCATCGCGGTTGCACTTTTGTGGTCCTTATACTTGCAGCATGT
ATACGCCCAGGAAATGGACAGGAAGCCCTTTGCACAGTGGCCTATAGGTG
GCAGGGACGAGCAAGTGGAAGGATGTTTCAATAATTTCGACGCCCAAATT
TCCATTTTACTTCGGCCCGAAGATCTGAGCAACCTGCGGTGTCAAGCACT
TTGCACCGAACAGGGTTATGCCTTGGCTGCCACTGGCGGGGGAGCCAGCA
GCACGTGCTGGTGCGGAAACAACCATCCGGGCTCGCTGCACGCGGTAGCA
AATGGCCAGTGTAACCGTCCGTGTAGTCCGGACAGAAAATCTTGCTACCT
CTTCACGTGTTGTGGAAACCAAAATGGTACGCTCTATACTGTGAGCTGGA
ACGGGGAGGCGAACCCCCTTAAACAGCTTTTGCGGCGCTTGACTCACGAT
TACCGCAACAACTCTGCATTTCGTCGCCGAATCGAGGAAATATACCTTGC
AGGCGGAGAGCGGGCATCTTTGCGGCTTCAAGAGCCGGAACACGGAGCGG
AAGGCACACCCTTGTACCTTAGCGTTGGCAACGGCTGCCCAGTGGGTTGG
TGTATGTACAGGGGTTATTGCTACAAGCAACACTGGGCGGAGCCCTCCAC
CTACGACGAGGCCTGCGCAAAGTGTCAATCAGAGGGAGCCGATCTGGTGT
TTATCATGAGCATTAGTGAAAATGACTTTGTACAAGATCTGTACGGCGGC
TGTCAAGGATGGCTGCACAACCGTTCGTCTCTGTCGGGTAAGCATACTTC
TACCAGCCCCGTGAGTCACAAATGCCTGCAACTGGCGCGTGACGGCACGT
GGATAAACAAATCCTGCCAAGGAGATGAAGATAATAAAGAGGAGGAGGAG
CGTGCTTCCTGCTTTGCCTGCAAGAAAATTTGCGCATCTCCCTCTCCCTC
CCTCCGCCCCCTCGCAGCCGAGGAGTGGGCAATCGAATTAGTGACGCCTA
CCTCCTCCGTGTACCATTGGTGCACAGACTGTCATGATACTTTCCTCAAA
AGCATCCATTCCAGCCAGTACCTCTGTGCAGATGACCAACACCGGCCATA
TATGAAGTGGGAACGTGACATAACCTGGTGCTTGTGGACCTTAGTAGTCG
ACCCAGAGTCCGGGGCTGTCGTACTGCTCACACCCCACGGCACTGCCTTA
ACTTACGATAAAGAGACGAGCGCTTTGGTATGTCGGCTGCTGCAATGGTC
TTATAAGACACCGCCGCCGCCAGATACGGTAACACAACTGTTTTCAGAAG
CAGGCGTGAAGGCCCCACAAGGCACCGTTGTCTTAAACCCAAGCAGCCTG
CCATTCGTCATCGTTGAGCGCTATTTACGCGTAACCATCCACAGTATCAA
CCGGAGGCCAGGAGCTTCTGGGTTCGCCAGTAGTGGGAGTAGGAATGGAC
CTCTGAGAGAATGCTCCATGGCAGTCTGTGACACGAGCTCCCGGAGCGAG
TCCTTCGGCTGCCGTCCCGTTTCTGGGCCTGGTGCCGGTTACACGCCCCT
GGTCTTTAATCAAGTGGCCTTGCGCGTCTTTGATCAGAGCTCGTACGTCT
CGGCGCGCCAGCCCTTGCCCAACGGGCGGCTAACCTGCTTGAATCAAAAC
CCTACCGAGACTGTAAATTGCGTCTTTGCCTACGGCGAGTCCTTCATCCT
CGTCCGTCGCTTTCGGGCTTATTGGGGAGTACAGCTTTTCGATACTCTCT
CCAAGCTCTTCGAAGCGACACAAGTTGACGATCTAACAGTGCAATACCAG
GGAGCGAGGCGGACAGGCAGGGACCGGACCGGAGATGCGAGTATTGGTGA
AGTGGTAAAACCAGGAATGGGCAATCACATATATTATAATAGGGAAGTAG
CTGCGGGTGGAGTAAGAGGAGCGAGAGGAAGGGCTGGAGGTGGGACCACC
GATGGTGGAGTTACTAGAGCAAGAGAATTCGGTAGACCAAATCGAGTACA
GTTAATGAACCGGAACAGTAAGCTGGTCCAGAATGCGTTGACGGGAGCCT
TTGATACATTTTACCAGATTATTAATCTAAAGCTCCTAGTGGAGGTACGA
AACTGGCAGCTGGGCCTCAATGTCGTGCCACAGACGGCGCTCACCATTCA
GTATTGGCTCACGACGCATTACCTCAAGTACCGGTGGCGCGCAGTCTTTC
AACCACAGGGTGGGTTCGTGCTCACTTTGTTTGGGAGGCAGATAGGTGGA
GATGACGGATGCATTTTTTCCTTGGGCGATTTGTCCGCAGCCCAGGATTT
GTTGTTTTCTATGTACGGTACCTACGAGGAGCCAATCGATGCGGGCGTGA
CGATGACAGATATAGAACACATTGAATTATCTTACCTGGGTCTGCCAGTG
CAGCCCTGGACCGATGAGGGACTCTAG

Synonyms

Publications