jgi.p|Nanoce1779_2|571885, mRNA_1368 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|571885
Unique Name	mRNA_1368
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1623
Alignment location	scaffold_1:397383..399005 +

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Properties


Property Name	Value
TranscriptId	571971
Track	FilteredModels2
ProteinId	571885

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:397383..399005 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|571885	gene_1368	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|571885	mRNA_1368-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1368	CDS_1368	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:397383..399005+
coding sequence from alignment at scaffold_1:397383..399005+

mRNA sequence

>mRNA_1368 ID=mRNA_1368|Name=jgi.p|Nanoce1779_2|571885|organism=Nannochloropsis oceanica|type=mRNA|length=1623bp
GCAGAAGGAATGATGTGCCCAGGCTGGTGCCATACAGGAGTAAGACCAGA
TTTAAGAGCCCCTGGTCGTGCCGCATCGTGCCTGTGGGGTGGTATTGGGT
TGATGTTTGAGTGTCATAAGGGGGAAGTATCTCATGATGGCCTCCAAGTC
GCTTATGATGCCTGTTGAGAGGATAGGAGTATACAAGCGAAAAAGAGCTT
GCTTTCTCATTGGCACGTCTTGTTTGTGATTATCCACGCACCGAACGGAT
CAACAACAATCTACATGAGGCCTTCAAGCGTTTCAAATGGGTGGACCGCT
TAAAGACTTACTCGCCTCCCTTACACGACAGGCGACAGGCCGACACGCTT
AGTCTCCCCACCCTTGCCCTGCCTCACCTTTTTTCTACCTAAAGCACCAT
GATAAGACACACACCGCGTCAACTCCTGCCTCTCCTCCTCATATTTCTGC
AGCTAGCCATCTCCGTCACATTTGTTATCCCATCCTCCTCCTCCGGTCGC
CCCATCCCCTCCCGCCTCACCCTACTCAAGCGCAACCTGCTGCAAGACCC
CATCACCGCTGCCGCCGACTTCCTGCAAAACGAAGCAGGCATAACCCCCC
CTGCAGACCTTCCAGCTCTTATCCAACTCCTCCTTTACCGTGGGGAGGAA
TCCGTCTCTCCCCACGAGCGAAAAGCCCTTCACCCTCTCGTCATCCCCCT
CACCAAGGTTGGCGATGAATACACCTGCCTCCTGCGTTGGCCCACCCCAC
AAGAGGGCGCCCCAATCCCCGTCGTCAAGACCCGGATGGGCTTGTACGGT
TTGAGGCTAATTGCACAGAGCACGTTGGAGTTGGCGCATCGGTTTGCAGC
GGAAGAAGACTGTATCGAAGGCCGAGAGGCGGAGTGGGCTGCTAGTCTTG
TTAATGCTCACTTACCCGCCGAGAAGCAGTATGTCAAGGGGGCAGTAGAA
AAAGTAGGATATGGGTTAGAGAGGTTTTTGTTTTTAAAAGTGGGAAGCTT
TCCAGACGTGTATAAGTTTTTGACGGACTTCCACTTGGGGAAGGGGGATC
AGGCTAGTGCCTTGGTGACGGCGGAGAAGGCATACAACACCTTCAATGGG
TGGGGGCAACCGTATATGGAGTATTGCAAGCTGCTTAGCGGGATGAAGGG
AAGAGAGCTGGAGGTGAGAGATGCAGCCTTTGCGGCGTTGAGGACGCCGT
TGTGGACTGTCGCGCGAGAGATGGAGGATTTGGAGTTGGTCCTGATGGCA
GCGCGCTCGAGCAAAGAAAAGGCGGCGGAAAAGTTTTGGAAGCTTTATGA
GGACGAACGGTTGCAGGAGATCAAGCAGGGTAAGCAGCCAGAGCAGGTAT
CGTTGGATCGGGCTGCATTTTTGATGGATGCTGCTTTGGTAGGCGCGAAT
GGGATCAAGGGGTGGGAGGAGGTGAGGGGGCCTCTGGCGGATCTTTACAG
AGACGCGGGAATGACTGATCTGGCCAAGTTTGTGGAAATGTAGAAGGAAG
GAAGAAGAGGAGGGGAAGGAAGGTCGGTGAGTGATATATAGCTGATAATA
GGACCTGTAGCGGACAATAACAGAAATAATGATTGGGGGAGAGCGATGGC
ATTTCGGGATTAACCGGTGGTGG

protein sequence of jgi.p|Nanoce1779_2|571885

>mRNA_1368-protein ID=mRNA_1368-protein|Name=jgi.p|Nanoce1779_2|571885|organism=Nannochloropsis oceanica|type=polypeptide|length=365bp
MIRHTPRQLLPLLLIFLQLAISVTFVIPSSSSGRPIPSRLTLLKRNLLQD
PITAAADFLQNEAGITPPADLPALIQLLLYRGEESVSPHERKALHPLVIP
LTKVGDEYTCLLRWPTPQEGAPIPVVKTRMGLYGLRLIAQSTLELAHRFA
AEEDCIEGREAEWAASLVNAHLPAEKQYVKGAVEKVGYGLERFLFLKVGS
FPDVYKFLTDFHLGKGDQASALVTAEKAYNTFNGWGQPYMEYCKLLSGMK
GRELEVRDAAFAALRTPLWTVAREMEDLELVLMAARSSKEKAAEKFWKLY
EDERLQEIKQGKQPEQVSLDRAAFLMDAALVGANGIKGWEEVRGPLADLY
RDAGMTDLAKFVEM*

mRNA from alignment at scaffold_1:397383..399005+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1368 ID=mRNA_1368|Name=jgi.p|Nanoce1779_2|571885|organism=Nannochloropsis oceanica|type=mRNA|length=1623bp|location=Sequence derived from alignment at scaffold_1:397383..399005+ (Nannochloropsis oceanica)
GCAGAAGGAATGATGTGCCCAGGCTGGTGCCATACAGGAGTAAGACCAGA
TTTAAGAGCCCCTGGTCGTGCCGCATCGTGCCTGTGGGGTGGTATTGGGT
TGATGTTTGAGTGTCATAAGGGGGAAGTATCTCATGATGGCCTCCAAGTC
GCTTATGATGCCTGTTGAGAGGATAGGAGTATACAAGCGAAAAAGAGCTT
GCTTTCTCATTGGCACGTCTTGTTTGTGATTATCCACGCACCGAACGGAT
CAACAACAATCTACATGAGGCCTTCAAGCGTTTCAAATGGGTGGACCGCT
TAAAGACTTACTCGCCTCCCTTACACGACAGGCGACAGGCCGACACGCTT
AGTCTCCCCACCCTTGCCCTGCCTCACCTTTTTTCTACCTAAAGCACCAT
GATAAGACACACACCGCGTCAACTCCTGCCTCTCCTCCTCATATTTCTGC
AGCTAGCCATCTCCGTCACATTTGTTATCCCATCCTCCTCCTCCGGTCGC
CCCATCCCCTCCCGCCTCACCCTACTCAAGCGCAACCTGCTGCAAGACCC
CATCACCGCTGCCGCCGACTTCCTGCAAAACGAAGCAGGCATAACCCCCC
CTGCAGACCTTCCAGCTCTTATCCAACTCCTCCTTTACCGTGGGGAGGAA
TCCGTCTCTCCCCACGAGCGAAAAGCCCTTCACCCTCTCGTCATCCCCCT
CACCAAGGTTGGCGATGAATACACCTGCCTCCTGCGTTGGCCCACCCCAC
AAGAGGGCGCCCCAATCCCCGTCGTCAAGACCCGGATGGGCTTGTACGGT
TTGAGGCTAATTGCACAGAGCACGTTGGAGTTGGCGCATCGGTTTGCAGC
GGAAGAAGACTGTATCGAAGGCCGAGAGGCGGAGTGGGCTGCTAGTCTTG
TTAATGCTCACTTACCCGCCGAGAAGCAGTATGTCAAGGGGGCAGTAGAA
AAAGTAGGATATGGGTTAGAGAGGTTTTTGTTTTTAAAAGTGGGAAGCTT
TCCAGACGTGTATAAGTTTTTGACGGACTTCCACTTGGGGAAGGGGGATC
AGGCTAGTGCCTTGGTGACGGCGGAGAAGGCATACAACACCTTCAATGGG
TGGGGGCAACCGTATATGGAGTATTGCAAGCTGCTTAGCGGGATGAAGGG
AAGAGAGCTGGAGGTGAGAGATGCAGCCTTTGCGGCGTTGAGGACGCCGT
TGTGGACTGTCGCGCGAGAGATGGAGGATTTGGAGTTGGTCCTGATGGCA
GCGCGCTCGAGCAAAGAAAAGGCGGCGGAAAAGTTTTGGAAGCTTTATGA
GGACGAACGGTTGCAGGAGATCAAGCAGGGTAAGCAGCCAGAGCAGGTAT
CGTTGGATCGGGCTGCATTTTTGATGGATGCTGCTTTGGTAGGCGCGAAT
GGGATCAAGGGGTGGGAGGAGGTGAGGGGGCCTCTGGCGGATCTTTACAG
AGACGCGGGAATGACTGATCTGGCCAAGTTTGTGGAAATGTAGAAGGAAG
GAAGAAGAGGAGGGGAAGGAAGGTCGGTGAGTGATATATAGCTGATAATA
GGACCTGTAGCGGACAATAACAGAAATAATGATTGGGGGAGAGCGATGGC
ATTTCGGGATTAACCGGTGGTGG

Coding sequence (CDS) from alignment at scaffold_1:397383..399005+

>mRNA_1368 ID=mRNA_1368|Name=jgi.p|Nanoce1779_2|571885|organism=Nannochloropsis oceanica|type=CDS|length=1095bp|location=Sequence derived from alignment at scaffold_1:397383..399005+ (Nannochloropsis oceanica)
ATGATAAGACACACACCGCGTCAACTCCTGCCTCTCCTCCTCATATTTCT
GCAGCTAGCCATCTCCGTCACATTTGTTATCCCATCCTCCTCCTCCGGTC
GCCCCATCCCCTCCCGCCTCACCCTACTCAAGCGCAACCTGCTGCAAGAC
CCCATCACCGCTGCCGCCGACTTCCTGCAAAACGAAGCAGGCATAACCCC
CCCTGCAGACCTTCCAGCTCTTATCCAACTCCTCCTTTACCGTGGGGAGG
AATCCGTCTCTCCCCACGAGCGAAAAGCCCTTCACCCTCTCGTCATCCCC
CTCACCAAGGTTGGCGATGAATACACCTGCCTCCTGCGTTGGCCCACCCC
ACAAGAGGGCGCCCCAATCCCCGTCGTCAAGACCCGGATGGGCTTGTACG
GTTTGAGGCTAATTGCACAGAGCACGTTGGAGTTGGCGCATCGGTTTGCA
GCGGAAGAAGACTGTATCGAAGGCCGAGAGGCGGAGTGGGCTGCTAGTCT
TGTTAATGCTCACTTACCCGCCGAGAAGCAGTATGTCAAGGGGGCAGTAG
AAAAAGTAGGATATGGGTTAGAGAGGTTTTTGTTTTTAAAAGTGGGAAGC
TTTCCAGACGTGTATAAGTTTTTGACGGACTTCCACTTGGGGAAGGGGGA
TCAGGCTAGTGCCTTGGTGACGGCGGAGAAGGCATACAACACCTTCAATG
GGTGGGGGCAACCGTATATGGAGTATTGCAAGCTGCTTAGCGGGATGAAG
GGAAGAGAGCTGGAGGTGAGAGATGCAGCCTTTGCGGCGTTGAGGACGCC
GTTGTGGACTGTCGCGCGAGAGATGGAGGATTTGGAGTTGGTCCTGATGG
CAGCGCGCTCGAGCAAAGAAAAGGCGGCGGAAAAGTTTTGGAAGCTTTAT
GAGGACGAACGGTTGCAGGAGATCAAGCAGGGTAAGCAGCCAGAGCAGGT
ATCGTTGGATCGGGCTGCATTTTTGATGGATGCTGCTTTGGTAGGCGCGA
ATGGGATCAAGGGGTGGGAGGAGGTGAGGGGGCCTCTGGCGGATCTTTAC
AGAGACGCGGGAATGACTGATCTGGCCAAGTTTGTGGAAATGTAG

Synonyms

Publications