jgi.p|Nanoce1779_2|571880, mRNA_1366 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|571880
Unique Name	mRNA_1366
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2461
Alignment location	scaffold_1:392449..394909 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	571966
Track	FilteredModels2
ProteinId	571880

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:392449..394909 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|571880	gene_1366	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|571880	mRNA_1366-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1366	CDS_1366	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:392449..394909+
coding sequence from alignment at scaffold_1:392449..394909+

mRNA sequence

>mRNA_1366 ID=mRNA_1366|Name=jgi.p|Nanoce1779_2|571880|organism=Nannochloropsis oceanica|type=mRNA|length=2461bp
CTCACTTGCTTCTGCATCGGTTTCAGTCAGTGAGGCACACGCTCTCCAAC
ACCCTTCTAACTCCCCTTGCACCGAACCATAACTACCGAAGGCACCCGGT
CCAACTCCCGCAGCAAAGGCCACGATCATCTATTTTCCCCGCTAAGCCAG
CTGCGTCGTTTGCGGTAGCCAGGCCGCCTCGTCTTCCCCCCCAAAACCTT
GGCACGTGCCGGTCATCCCGCGTAAAACGCATATCAGAAAGCACCATGTT
GCGGTCCCTATTCGGTACCCTCCTCCTCTTCCTCCTCGTTGCCCTTGATA
TCCAAGCCTTCTACCATCTTCCCAACGCGCCGTGTCGTACCGCCAGCCAC
ACCTGTCGCTACTTTTTTGGCGGCCGGCAACAACCCAAAGCAGAACAAGA
CCTCGTCCGCGCTTCTTCATCCTCAAACCTCCCTGGAACCACCCTCGTGC
TCCGCCATCCCACCACAGGCTCGCAAGTCTACATTGTGGGATGCGTGCAC
GGATCGGAGGCATCGGAAGAGGACGTCGCCACGGTCTTCCGTTCGCAGAA
CCCGGCGGCGGTGGTACTGGAGTTGTGTCAGTCCCGCTTTGAGAGTATGC
AAGCGGAAGAAGCCAAATATCAAGCCGCGATCATCGAAGAAGACAAACAA
CTGAAAGCTGCAAGGAAAGTAAAGATAGAAATTGGTGCTTCCACCGCCGC
CGCGGCAGGCACAGACTCGCCAAATATAAATGCAGCAGCAACGACGAGGG
TAGCGACGGGAGGGCCTACAGGGACCTTGAGCCACGTCGCGGGCGGTCTC
GCCGAATGGGGCCGCAACCTCCACACCTTCTCAAAACAACACGGACCGAT
GCAAACTGTCCTTATTGCTCTCCTCTCCTCCTCCGCCGAAGTCCAACGGG
TCCTCACCACCTCCAGCAGCAGCACCAGCAGCAGTCGTCGTCGTCGTCGT
CGTCGTGCGTCGTGTGAGTTCCGGACTTCCGTCGAGCTAGCACTGGAAGG
TAAAGCAGGAATAGTCCTGGGCGATCAAGACCTAAACATAACACTCAGTA
GATTTAAGGAGGGGATTTGGCAATGGGGCACACGTGGAGAGGAGGAGGAA
GAAAAAAGACGAGGAGGAGGACAGCAGGCCCTGAGGGAGTTCGCGTCTAT
CCGCAATGCGCTTTTGGGGCCTTCGGATTTACCGCGCACACAACGGGTGA
ATGTCTTGAGACTATTGTTTACGCAAGAGAGGTACATTAGAGAAGTTGTC
AAGGTGTTGGTGCCTGTAGGGTTAGTGGTGCTTGTGGCCTTGCGCGCTGT
GGAGACGATGGGGGATGCGGCGATCGCCTCTTTGAATCAAGTGTTGCCTT
CCCTGCCCTCCTCCTCAGCCGTAGATTTTATCTCTTCACTTATTTTGTCT
ACTTCTCCGACTGGTGACGCTGCTGTAACCACAATTACTACTGCTGCTGC
TGCTGCTGCTACTGCTGCTGCGCCGTCGCTGCTTGATGCTGAATGGGTAT
CTAATTTGAGTTGGGGTGGGATGAATGCTTTTATGCTTCTTTATTTCGTG
GCCATTAATAGGTATATATTGGTTGAGCGTGATTTGTTTCTTGCAGATTC
GATTGCGGAGGCGTCGTTAAAGGGTGTGTACAAGGGAGGAAAGATAGCGG
CGGTGGTTGGGTTGTTGCATGGCAATGGGGTGGCGAGGCATCTGAGGGAA
AAGCATGGCTTTGAGTTGCTTGATCGGCCTTAAAGAATGAGGGCGAGGGG
CAATAAAGAGTTAGGGAAGGATGAGTGGCGTGGTGTTGCCATTGTTTTTA
TCGTATTTGAATACCCCATGTGCAGGATTGGAAGTAACGATCTCGAGGGC
AACGAGATAGGGACAGGGAGCAAGCGAATGGAGAGGGAGAAAACATCGCA
ATTAGTGAATGAGAGCGCAGGAGGGAGCGTGTGTGTGAATAAGAGACCGA
GAAAGAGAGCGAGGGTGGGGTAGGCTAGACGGACCGGGAGCTGAAACAAC
TGCTTCGACTCCATACATCCGTTCTTCCCGCCTTGCCCCCCTCCCTCCCT
CTCTTCTCCCTCCCTCCCTTTAAATGTGCCCTTGAATGACTCACAAACCT
TCCATTCAGCCTTTTTAAGCAGCTTGCTCGTTAAAGAATGAATTGTGAAT
AAGTCTCCTTCAAGAGTAAAACGAATCAATCTCTACTATCAAAAGAATAA
TTATGTAAATTATAATTTAAATAACGACGACAAAAACAACAATGATTATA
AAATTGACTGATTAGAATCTACTTTTTAGACGGTGATAGCAGTTGATTAA
AATATGGGTCGATATAAGGTAGGGTAACGGGGGGGGGAACGAGAGAAGAA
CGAGGAAGGAGAAGAAGAACCAAAAGGAGGAATAGGATGAGGATGAGGAG
GAGGAGGAGAAGATGACGGAGCGAGTAGAGAGCAAAAACGTCCTTTAAAT
AAAAAAAAGTG

protein sequence of jgi.p|Nanoce1779_2|571880

>mRNA_1366-protein ID=mRNA_1366-protein|Name=jgi.p|Nanoce1779_2|571880|organism=Nannochloropsis oceanica|type=polypeptide|length=496bp
MLRSLFGTLLLFLLVALDIQAFYHLPNAPCRTASHTCRYFFGGRQQPKAE
QDLVRASSSSNLPGTTLVLRHPTTGSQVYIVGCVHGSEASEEDVATVFRS
QNPAAVVLELCQSRFESMQAEEAKYQAAIIEEDKQLKAARKVKIEIGAST
AAAAGTDSPNINAAATTRVATGGPTGTLSHVAGGLAEWGRNLHTFSKQHG
PMQTVLIALLSSSAEVQRVLTTSSSSTSSSRRRRRRRASCEFRTSVELAL
EGKAGIVLGDQDLNITLSRFKEGIWQWGTRGEEEEEKRRGGGQQALREFA
SIRNALLGPSDLPRTQRVNVLRLLFTQERYIREVVKVLVPVGLVVLVALR
AVETMGDAAIASLNQVLPSLPSSSAVDFISSLILSTSPTGDAAVTTITTA
AAAAATAAAPSLLDAEWVSNLSWGGMNAFMLLYFVAINRYILVERDLFLA
DSIAEASLKGVYKGGKIAAVVGLLHGNGVARHLREKHGFELLDRP*

mRNA from alignment at scaffold_1:392449..394909+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1366 ID=mRNA_1366|Name=jgi.p|Nanoce1779_2|571880|organism=Nannochloropsis oceanica|type=mRNA|length=2461bp|location=Sequence derived from alignment at scaffold_1:392449..394909+ (Nannochloropsis oceanica)
CTCACTTGCTTCTGCATCGGTTTCAGTCAGTGAGGCACACGCTCTCCAAC
ACCCTTCTAACTCCCCTTGCACCGAACCATAACTACCGAAGGCACCCGGT
CCAACTCCCGCAGCAAAGGCCACGATCATCTATTTTCCCCGCTAAGCCAG
CTGCGTCGTTTGCGGTAGCCAGGCCGCCTCGTCTTCCCCCCCAAAACCTT
GGCACGTGCCGGTCATCCCGCGTAAAACGCATATCAGAAAGCACCATGTT
GCGGTCCCTATTCGGTACCCTCCTCCTCTTCCTCCTCGTTGCCCTTGATA
TCCAAGCCTTCTACCATCTTCCCAACGCGCCGTGTCGTACCGCCAGCCAC
ACCTGTCGCTACTTTTTTGGCGGCCGGCAACAACCCAAAGCAGAACAAGA
CCTCGTCCGCGCTTCTTCATCCTCAAACCTCCCTGGAACCACCCTCGTGC
TCCGCCATCCCACCACAGGCTCGCAAGTCTACATTGTGGGATGCGTGCAC
GGATCGGAGGCATCGGAAGAGGACGTCGCCACGGTCTTCCGTTCGCAGAA
CCCGGCGGCGGTGGTACTGGAGTTGTGTCAGTCCCGCTTTGAGAGTATGC
AAGCGGAAGAAGCCAAATATCAAGCCGCGATCATCGAAGAAGACAAACAA
CTGAAAGCTGCAAGGAAAGTAAAGATAGAAATTGGTGCTTCCACCGCCGC
CGCGGCAGGCACAGACTCGCCAAATATAAATGCAGCAGCAACGACGAGGG
TAGCGACGGGAGGGCCTACAGGGACCTTGAGCCACGTCGCGGGCGGTCTC
GCCGAATGGGGCCGCAACCTCCACACCTTCTCAAAACAACACGGACCGAT
GCAAACTGTCCTTATTGCTCTCCTCTCCTCCTCCGCCGAAGTCCAACGGG
TCCTCACCACCTCCAGCAGCAGCACCAGCAGCAGTCGTCGTCGTCGTCGT
CGTCGTGCGTCGTGTGAGTTCCGGACTTCCGTCGAGCTAGCACTGGAAGG
TAAAGCAGGAATAGTCCTGGGCGATCAAGACCTAAACATAACACTCAGTA
GATTTAAGGAGGGGATTTGGCAATGGGGCACACGTGGAGAGGAGGAGGAA
GAAAAAAGACGAGGAGGAGGACAGCAGGCCCTGAGGGAGTTCGCGTCTAT
CCGCAATGCGCTTTTGGGGCCTTCGGATTTACCGCGCACACAACGGGTGA
ATGTCTTGAGACTATTGTTTACGCAAGAGAGGTACATTAGAGAAGTTGTC
AAGGTGTTGGTGCCTGTAGGGTTAGTGGTGCTTGTGGCCTTGCGCGCTGT
GGAGACGATGGGGGATGCGGCGATCGCCTCTTTGAATCAAGTGTTGCCTT
CCCTGCCCTCCTCCTCAGCCGTAGATTTTATCTCTTCACTTATTTTGTCT
ACTTCTCCGACTGGTGACGCTGCTGTAACCACAATTACTACTGCTGCTGC
TGCTGCTGCTACTGCTGCTGCGCCGTCGCTGCTTGATGCTGAATGGGTAT
CTAATTTGAGTTGGGGTGGGATGAATGCTTTTATGCTTCTTTATTTCGTG
GCCATTAATAGGTATATATTGGTTGAGCGTGATTTGTTTCTTGCAGATTC
GATTGCGGAGGCGTCGTTAAAGGGTGTGTACAAGGGAGGAAAGATAGCGG
CGGTGGTTGGGTTGTTGCATGGCAATGGGGTGGCGAGGCATCTGAGGGAA
AAGCATGGCTTTGAGTTGCTTGATCGGCCTTAAAGAATGAGGGCGAGGGG
CAATAAAGAGTTAGGGAAGGATGAGTGGCGTGGTGTTGCCATTGTTTTTA
TCGTATTTGAATACCCCATGTGCAGGATTGGAAGTAACGATCTCGAGGGC
AACGAGATAGGGACAGGGAGCAAGCGAATGGAGAGGGAGAAAACATCGCA
ATTAGTGAATGAGAGCGCAGGAGGGAGCGTGTGTGTGAATAAGAGACCGA
GAAAGAGAGCGAGGGTGGGGTAGGCTAGACGGACCGGGAGCTGAAACAAC
TGCTTCGACTCCATACATCCGTTCTTCCCGCCTTGCCCCCCTCCCTCCCT
CTCTTCTCCCTCCCTCCCTTTAAATGTGCCCTTGAATGACTCACAAACCT
TCCATTCAGCCTTTTTAAGCAGCTTGCTCGTTAAAGAATGAATTGTGAAT
AAGTCTCCTTCAAGAGTAAAACGAATCAATCTCTACTATCAAAAGAATAA
TTATGTAAATTATAATTTAAATAACGACGACAAAAACAACAATGATTATA
AAATTGACTGATTAGAATCTACTTTTTAGACGGTGATAGCAGTTGATTAA
AATATGGGTCGATATAAGGTAGGGTAACGGGGGGGGGAACGAGAGAAGAA
CGAGGAAGGAGAAGAAGAACCAAAAGGAGGAATAGGATGAGGATGAGGAG
GAGGAGGAGAAGATGACGGAGCGAGTAGAGAGCAAAAACGTCCTTTAAAT
AAAAAAAAGTG

Coding sequence (CDS) from alignment at scaffold_1:392449..394909+

>mRNA_1366 ID=mRNA_1366|Name=jgi.p|Nanoce1779_2|571880|organism=Nannochloropsis oceanica|type=CDS|length=1488bp|location=Sequence derived from alignment at scaffold_1:392449..394909+ (Nannochloropsis oceanica)
ATGTTGCGGTCCCTATTCGGTACCCTCCTCCTCTTCCTCCTCGTTGCCCT
TGATATCCAAGCCTTCTACCATCTTCCCAACGCGCCGTGTCGTACCGCCA
GCCACACCTGTCGCTACTTTTTTGGCGGCCGGCAACAACCCAAAGCAGAA
CAAGACCTCGTCCGCGCTTCTTCATCCTCAAACCTCCCTGGAACCACCCT
CGTGCTCCGCCATCCCACCACAGGCTCGCAAGTCTACATTGTGGGATGCG
TGCACGGATCGGAGGCATCGGAAGAGGACGTCGCCACGGTCTTCCGTTCG
CAGAACCCGGCGGCGGTGGTACTGGAGTTGTGTCAGTCCCGCTTTGAGAG
TATGCAAGCGGAAGAAGCCAAATATCAAGCCGCGATCATCGAAGAAGACA
AACAACTGAAAGCTGCAAGGAAAGTAAAGATAGAAATTGGTGCTTCCACC
GCCGCCGCGGCAGGCACAGACTCGCCAAATATAAATGCAGCAGCAACGAC
GAGGGTAGCGACGGGAGGGCCTACAGGGACCTTGAGCCACGTCGCGGGCG
GTCTCGCCGAATGGGGCCGCAACCTCCACACCTTCTCAAAACAACACGGA
CCGATGCAAACTGTCCTTATTGCTCTCCTCTCCTCCTCCGCCGAAGTCCA
ACGGGTCCTCACCACCTCCAGCAGCAGCACCAGCAGCAGTCGTCGTCGTC
GTCGTCGTCGTGCGTCGTGTGAGTTCCGGACTTCCGTCGAGCTAGCACTG
GAAGGTAAAGCAGGAATAGTCCTGGGCGATCAAGACCTAAACATAACACT
CAGTAGATTTAAGGAGGGGATTTGGCAATGGGGCACACGTGGAGAGGAGG
AGGAAGAAAAAAGACGAGGAGGAGGACAGCAGGCCCTGAGGGAGTTCGCG
TCTATCCGCAATGCGCTTTTGGGGCCTTCGGATTTACCGCGCACACAACG
GGTGAATGTCTTGAGACTATTGTTTACGCAAGAGAGGTACATTAGAGAAG
TTGTCAAGGTGTTGGTGCCTGTAGGGTTAGTGGTGCTTGTGGCCTTGCGC
GCTGTGGAGACGATGGGGGATGCGGCGATCGCCTCTTTGAATCAAGTGTT
GCCTTCCCTGCCCTCCTCCTCAGCCGTAGATTTTATCTCTTCACTTATTT
TGTCTACTTCTCCGACTGGTGACGCTGCTGTAACCACAATTACTACTGCT
GCTGCTGCTGCTGCTACTGCTGCTGCGCCGTCGCTGCTTGATGCTGAATG
GGTATCTAATTTGAGTTGGGGTGGGATGAATGCTTTTATGCTTCTTTATT
TCGTGGCCATTAATAGGTATATATTGGTTGAGCGTGATTTGTTTCTTGCA
GATTCGATTGCGGAGGCGTCGTTAAAGGGTGTGTACAAGGGAGGAAAGAT
AGCGGCGGTGGTTGGGTTGTTGCATGGCAATGGGGTGGCGAGGCATCTGA
GGGAAAAGCATGGCTTTGAGTTGCTTGATCGGCCTTAA

Synonyms

Publications