jgi.p|Nanoce1779_2|571874, mRNA_1365 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571874
Unique NamemRNA_1365
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1068
Alignment locationscaffold_1:390290..392176 -

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Properties
Property NameValue
TranscriptId571960
TrackFilteredModels2
ProteinId571874
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:390290..392176 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571874gene_1365Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571874mRNA_1365-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1365CDS_1365Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1365 ID=mRNA_1365|Name=jgi.p|Nanoce1779_2|571874|organism=Nannochloropsis oceanica|type=mRNA|length=1068bp
ACAGGGAGCGTCGCTGGGACAAGGCGCGCGAGAACCTCCTCTTTTGCCAG
CCAGCAAGGATGACTGTTTCAGAGGTAAAGGCCACCAAGGAGGAGATGGA
CAAGGGGCAGATTGATCTTGCCCTGAGAGATGCTTGCGCCCACCTCCTCA
TCCCGCTCAACAAATGCCGGCGCGTGACGTTTTTTCTACCCTGGAAGTGC
GAGGACGAGCGGCATGGGTATGAGGCTTGCCAGTACGCCGAGTATCGCAA
GAGAGCACAACTGCTGGCGGACAAGAACTAAACAGAGAGGGCGAGATGAC
GAATATGATGATGATGGTGGTGGGTGAGGGGGCGAGAGGGCGGAAGGAGG
GGCGGGGATTGTTCGGGGTTTGCCTGGGATCCGTCAGGGAGTAAGGCATG
CCGTGCTGCTGTTGGAGGAGGAGAGAGTGCCTGTCTGTGTGTGAGTGTGT
GTGTGGAAGGGCAGTTGAAAGGAGCGGACGAAGAAAAAGAAAAAGAAAGA
GAAAAAAGACACTTTGAAACAGAAGAAAAAGAAGAGGAAGTAGAAGTAGA
TGGCAGTGATGACGAAGAAAAAAAGGAAGAAGAGAAGAAAAAGGAGAAGG
AGAAACCCATTATCCATCTCTGTAATGTTAAACCATGTCGTCGTAACTGC
TTGGTCGCTAGCTTGTTGCTTCCTTCCCATTTCTTGGCATCTCGCCTTCT
TTCTTTCAAGCCCACCACGCGTCCGTATCTCCTCCTCACTCTCACTCACT
CGGGCGATAATATTTCCTCCTTCCTTTCCTCTCCCTTTCTTTTTCAGTAT
TTTTTTAACTCACCTTCTCTGTATACACCGACAAGCCTCCCTGCCTCTCT
TTCTCCTTCTCTACATTGCCCCGCCCGTCATGAGGGTGACGCGTTGCATG
ATACTGTCCTCTTCGGGGTCATACGGGTGGTCTTTCGAAGGGATTTCGAG
GACGGTTGGGATGGTCTTGGAGTAGGCCCTGATCACGTGTCGGATCTCGT
TGGCAATGTGCTGGTTGATGAGCACAATGCCGATGTCATCCCGGTCCACC
ATCCTGTTGAACGCCTCC
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protein sequence of jgi.p|Nanoce1779_2|571874

>mRNA_1365-protein ID=mRNA_1365-protein|Name=jgi.p|Nanoce1779_2|571874|organism=Nannochloropsis oceanica|type=polypeptide|length=74bp
MTVSEVKATKEEMDKGQIDLALRDACAHLLIPLNKCRRVTFFLPWKCEDE
RHGYEACQYAEYRKRAQLLADKN*
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mRNA from alignment at scaffold_1:390290..392176-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1365 ID=mRNA_1365|Name=jgi.p|Nanoce1779_2|571874|organism=Nannochloropsis oceanica|type=mRNA|length=1887bp|location=Sequence derived from alignment at scaffold_1:390290..392176- (Nannochloropsis oceanica)
ACAGGGAGCGTCGCTGGGACAAGGCGCGCGAGAACCTCCTCTTTTGCCAG
CCAGCAAGGATGACTGTTTCAGGTGAGCGCCCTGTGTGTCATATGCCCGT
TGAGGCCTCCTTCTCACATCCTCTCTGACCCAACCAACGCTTTGGCAAAA
CAGAGGTAAAGGCCACCAAGGAGGAGATGGACAAGGGGCAGATTGATCTT
GCCCTGAGAGATGCTTGCGCCCACCTCCTCATCCCGCTCAACAAGTATGT
GCCATTGTGAAAAGGGTGGAGCATCTTGTATACGACTTAAGTGAGGGCTA
GCGGCATGACGACGATATTATTCCCATTTCCTCTCACTCTAGTGGTTTCA
GCACTCACTTTCATTCCTTTTTTTCCCTTAGATGCCGGCGCGTGACGTTT
TTTCTACCCTGGAAGTGCGAGGACGAGCGGCATGGGTATGAGGCTTGCCA
GTACGCCGAGTAAGTGCATGAGCACGGGAGGGAGGGGGGGAGTTGGGGAG
GGAGGGAGAGTTTGATTTCATATAACGGCACAGATCCTTCGCATCTATGG
ACGGCTGTCATTGAGTATCGTTTGGCAAATTTTTTTAAAATGAGGAAAAA
CTTTTCTCATCTCTTCCTCTTCATTTCCTTTTTTTCTCCCCCTTGAGGTG
GATGTGTGTTGGTGTTTATGTTTGTTTTTCTCTGTGGATTAAATTAATCA
AACCACTTACCCACTTACAGGTATCGCAAGAGAGCACAACTGCTGGCGGA
CAAGAACTAAACAGAGAGGGCGAGATGACGAATATGATGATGATGGTGGT
GGGTGAGGGGGCGAGAGGGCGGAAGGAGGGGCGGGGATTGTTCGGGGTTT
GCCTGGGATCCGTCAGGGAGTAAGGCATGCCGTGCTGCTGTTGGAGGAGG
AGAGAGTGCCTGTCTGTGTGTGAGTGTGTGTGTGGAAGGGCAGTTGAAAG
GAGCGGACGAAGAAAAAGAAAAAGAAAGAGAAAAAAGACACTTTGAAACA
GAAGAAAAAGAAGAGGAAGTAGAAGTAGATGGCAGTGATGACGAAGAAAA
AAAGGAAGAAGAGAAGAAAAAGGAGAAGGAGAAACCCATTATCCATCTCT
GTAATGTTAAACCATGTCGTCGTAACTGCTTGGTCGCTAGCTTGTTGCTT
CCTTCCCATTTCTTGGCATCTCGCCTTCTTTCTTTCAAGCCCACCACGCG
TCCGTATCTCCTCCTCACTCTCACTCACTCGGGCGATAATATTTCCTCCT
TCCTTTCCTCTCCCTTTCTTTTTCAGTATTTTTTTAACTCACCTTCTCTG
TATACACCGACAAGCCTCCCTGCCTCTCTTTCTCCTTCTCTACATTGCCC
CGCCCGTCATGAGGGTGACGCGTTGCATGATACTGTCCTCTTCGGGGTCA
TACCTATGAAGGTGAGAGGGAAGAGAGGAATAGGAGAGTTGAGAAGAGAG
ATGGACGCCATGGCACAAGTAAAGACCGGAAGCGGAGGAGAGGGGGGGGG
AAGATAAGGGGGATTGAAGGGAGGAAGGGAGGGAGGGAGGGAGGGAGGGA
GAGGGGTACGCACGGGTGGTCTTTCGAAGGGATTTCGAGGACGGTTGGGA
TGGTCTTGGAGTAGGCCCTGATCACGTGTCGGATCTCGTTGGCAATCTGG
AGGTATGGAGTTAGGAAGGGAAAAGATTAGGCGACGGTGCATGCCACACA
GAGGTGAGATCGAGAAACTTCTTTGCTTTCCCTTCCCAGGTAGGCTGCTT
GAGAAAATTGGTTGCTACATGCCCCCTCCTCACTCCACTCCCTCACTCCC
TCCCCTTCTTCCCCTGAGGGACGTACGTGCTGGTTGATGAGCACAATGCC
GATGTCATCCCGGTCCACCATCCTGTTGAACGCCTCC
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Coding sequence (CDS) from alignment at scaffold_1:390290..392176-

>mRNA_1365 ID=mRNA_1365|Name=jgi.p|Nanoce1779_2|571874|organism=Nannochloropsis oceanica|type=CDS|length=888bp|location=Sequence derived from alignment at scaffold_1:390290..392176- (Nannochloropsis oceanica)
GTATCGCAAGAGAGCACAACTGCTGGCGGACAAGAACTAAATGCCGGCGC
GTGACGTTTTTTCTACCCTGGAAGTGCGAGGACGAGCGGCATGGGTATGA
GGCTTGCCAGTACGCCGAAGGTAAAGGCCACCAAGGAGGAGATGGACAAG
GGGCAGATTGATCTTGCCCTGAGAGATGCTTGCGCCCACCTCCTCATCCC
GCTCAACAAATGACTGTTTCAGGTATCGCAAGAGAGCACAACTGCTGGCG
GACAAGAACTAAATGCCGGCGCGTGACGTTTTTTCTACCCTGGAAGTGCG
AGGACGAGCGGCATGGGTATGAGGCTTGCCAGTACGCCGAAGGTAAAGGC
CACCAAGGAGGAGATGGACAAGGGGCAGATTGATCTTGCCCTGAGAGATG
CTTGCGCCCACCTCCTCATCCCGCTCAACAAATGACTGTTTCAGGTATCG
CAAGAGAGCACAACTGCTGGCGGACAAGAACTAAATGCCGGCGCGTGACG
TTTTTTCTACCCTGGAAGTGCGAGGACGAGCGGCATGGGTATGAGGCTTG
CCAGTACGCCGAAGGTAAAGGCCACCAAGGAGGAGATGGACAAGGGGCAG
ATTGATCTTGCCCTGAGAGATGCTTGCGCCCACCTCCTCATCCCGCTCAA
CAAATGACTGTTTCAGGTATCGCAAGAGAGCACAACTGCTGGCGGACAAG
AACTAAATGCCGGCGCGTGACGTTTTTTCTACCCTGGAAGTGCGAGGACG
AGCGGCATGGGTATGAGGCTTGCCAGTACGCCGAAGGTAAAGGCCACCAA
GGAGGAGATGGACAAGGGGCAGATTGATCTTGCCCTGAGAGATGCTTGCG
CCCACCTCCTCATCCCGCTCAACAAATGACTGTTTCAG
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Synonyms
Publications