jgi.p|Nanoce1779_2|535366, mRNA_1364 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|535366
Unique NamemRNA_1364
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1610
Alignment locationscaffold_1:389777..392473 +

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Properties
Property NameValue
TranscriptId535452
TrackFilteredModels2
ProteinId535366
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:389777..392473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|535366gene_1364Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|535366mRNA_1364-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1364CDS_1364Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1364 ID=mRNA_1364|Name=jgi.p|Nanoce1779_2|535366|organism=Nannochloropsis oceanica|type=mRNA|length=1610bp
GTGTCGCTCGTACTGCATTTCGCGAAGAGTGAGAGTGAGTGAAGGAGTGA
AAGCTGCTTCTTCTGCTCGCGTGCCTTGAAGGAAAGGAACAGCATCGCGG
TATTGGTCTAAGTTGCGAGCTAAACCTTATAAAGTCTACGCATCGTGCAC
TGCAGGCGTTCTTGCGTCCCCTCTCCGCCCTGTATTTCGCCCTTCACCTT
CCTCAACACGTCGTCTGATTCAAGATTCCCAAATCATCATCGCGCAGGCA
CTCCAATACTATGGCGGACGAGGACGGCAAGCTGGTGGCTGTGATTGGGG
ACGAGGACACCGTCACAGGCTTTTTGTTGGCGGGTGTGGGGCACCGTACG
ATGGAAGGCGCCAATTTTTTGGTCGTCAAAAATGATACACCCGCGTCGGT
GGTGGAGGAGGCGTTCAACAGGATGGTGGACCGGGATGACATCGGCATTG
TGCTCATCAACCAGCACATTGCCAACGAGATCCGACACGTGATCAGGGCC
TACTCCAAGACCATCCCAACCGTCCTCGAAATCCCTTCGAAAGACCACCC
GTATGACCCCGAAGAGGACAGTATCATGCAACGCGTCACCCTCATGACGG
GCGGGGCAATGTAGAGAAGGAGAAAGAGAGGCAGGGAGGCTTGTCGGTGT
ATACAGAGAAGACAGGCACTCTCTCCTCCTCCAACAGCAGCACGGCATGC
CTTACTCCCTGACGGATCCCAGGCAAACCCCGAACAATCCCCGCCCCTCC
TTCCGCCCTCTCGCCCCCTCACCCACCACCATCATCATCATATTCGTCAT
CTCGCCCTCTCTGTTTAGTTCTTGTCCGCCAGCAGTTGTGCTCTCTTGCG
ATACTCGGCGTACTGGCAAGCCTCATACCCATGCCGCTCGTCCTCGCACT
TCCAGGGTAGAAAAAACGTCACGCGCCGGCATCTAAGGGAAAAAAAGGAA
TGAAAGTGAGTGCTGAAACCACTAGAGTGAGAGGAAATGGGAATAATATC
GTCGTCATGCCGCTAGCCCTCACTTAAGTCGTATACAAGATGCTCCACCC
TTTTCACAATGGCACATACTTGTTGAGCGGGATGAGGAGGTGGGCGCAAG
CATCTCTCAGGGCAAGATCAATCTGCCCCTTGTCCATCTCCTCCTTGGTG
GCCTTTACCTCTGTTTTGCCAAAGCGTTGGTTGGGTCAGAGAGGATGTGA
GAAGGAGGCCTCAACGGGCATATGACACACAGGGCGCTCACCTGAAACAG
TCATCCTTGCTGGCTGGCAAAAGAGGAGGTTCTCGCGCGCCTTGTCCCAG
CGACGCTCCCTGTCGCATACGTGGGGTCGTGCGTGAAGATGGTGGGTCTA
AAAGCGTGAAGGCCCGGGGGACTTTGGTATCAAAGGCATGATGTTGAAAA
TCTCACGGCTTAAGTCATCACCGCCCCTTTCTTCGGCAGTCTCCGAGCAC
AAACGCAACACCCAAGAAGTTCCCTTGGAAGCACACGCGCCAGACCTTCC
TGTCGTGATTGGTATGCTGTGTTGCATCGGACACAATTTTGCCCTGCCTT
TTCTCAGATCTGGTCGCATATAGATTGATAAACTCCTCACTTGCTTCTGC
ATCGGTTTCA
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protein sequence of jgi.p|Nanoce1779_2|535366

>mRNA_1364-protein ID=mRNA_1364-protein|Name=jgi.p|Nanoce1779_2|535366|organism=Nannochloropsis oceanica|type=polypeptide|length=118bp
MADEDGKLVAVIGDEDTVTGFLLAGVGHRTMEGANFLVVKNDTPASVVEE
AFNRMVDRDDIGIVLINQHIANEIRHVIRAYSKTIPTVLEIPSKDHPYDP
EEDSIMQRVTLMTGGAM*
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mRNA from alignment at scaffold_1:389777..392473+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1364 ID=mRNA_1364|Name=jgi.p|Nanoce1779_2|535366|organism=Nannochloropsis oceanica|type=mRNA|length=2697bp|location=Sequence derived from alignment at scaffold_1:389777..392473+ (Nannochloropsis oceanica)
GTGTCGCTCGTACTGCATTTCGCGAAGAGTGAGAGTGAGTGAAGGAGTGA
AAGCTGCTTCTTCTGCTCGCGTGCCTTGAAGGAAAGGAACAGCATCGCGG
TATTGGTCTAAGTTGCGAGCTAAACCTTATAAAGTCTACGCATCGTGCAC
TGCAGGCGTTCTTGCGTCCCCTCTCCGCCCTGTATTTCGCCCTTCACCTT
CCTCAACACGTCGTCTGATTCAAGATTCCCAAATCATCATCGCGCAGGCA
CTCCAATACTATGGCGGACGAGGACGGCAAGCTGGTGGCTGTGATTGGGG
ACGAGGACACCGTCACAGGCTTTTTGTTGGCGGGTGTGGGGCACCGTACG
ATGGAAGGCGCCAATTTTTTGGTCGTCAAAAATGGTATTTGTTGGGGAAA
GGGGACGGGAAAGCAAGGAAATAGCACGCGCGCGCATACACACTCTCACA
CTTACACTCTCACACACATGCATCACCCTGCATACGTACAGATACACCCG
CGTCGGTGGTGGAGGAGGCGTTCAACAGGATGGTGGACCGGGATGACATC
GGCATTGTGCTCATCAACCAGCACGTACGTCCCTCAGGGGAAGAAGGGGA
GGGAGTGAGGGAGTGGAGTGAGGAGGGGGCATGTAGCAACCAATTTTCTC
AAGCAGCCTACCTGGGAAGGGAAAGCAAAGAAGTTTCTCGATCTCACCTC
TGTGTGGCATGCACCGTCGCCTAATCTTTTCCCTTCCTAACTCCATACCT
CCAGATTGCCAACGAGATCCGACACGTGATCAGGGCCTACTCCAAGACCA
TCCCAACCGTCCTCGAAATCCCTTCGAAAGACCACCCGTGCGTACCCCTC
TCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTTCAATCCCCCTTATCTT
CCCCCCCCCTCTCCTCCGCTTCCGGTCTTTACTTGTGCCATGGCGTCCAT
CTCTCTTCTCAACTCTCCTATTCCTCTCTTCCCTCTCACCTTCATAGGTA
TGACCCCGAAGAGGACAGTATCATGCAACGCGTCACCCTCATGACGGGCG
GGGCAATGTAGAGAAGGAGAAAGAGAGGCAGGGAGGCTTGTCGGTGTATA
CAGAGAAGGTGAGTTAAAAAAATACTGAAAAAGAAAGGGAGAGGAAAGGA
AGGAGGAAATATTATCGCCCGAGTGAGTGAGAGTGAGGAGGAGATACGGA
CGCGTGGTGGGCTTGAAAGAAAGAAGGCGAGATGCCAAGAAATGGGAAGG
AAGCAACAAGCTAGCGACCAAGCAGTTACGACGACATGGTTTAACATTAC
AGAGATGGATAATGGGTTTCTCCTTCTCCTTTTTCTTCTCTTCTTCCTTT
TTTTCTTCGTCATCACTGCCATCTACTTCTACTTCCTCTTCTTTTTCTTC
TGTTTCAAAGTGTCTTTTTTCTCTTTCTTTTTCTTTTTCTTCGTCCGCTC
CTTTCAACTGCCCTTCCACACACACACTCACACACAGACAGGCACTCTCT
CCTCCTCCAACAGCAGCACGGCATGCCTTACTCCCTGACGGATCCCAGGC
AAACCCCGAACAATCCCCGCCCCTCCTTCCGCCCTCTCGCCCCCTCACCC
ACCACCATCATCATCATATTCGTCATCTCGCCCTCTCTGTTTAGTTCTTG
TCCGCCAGCAGTTGTGCTCTCTTGCGATACCTGTAAGTGGGTAAGTGGTT
TGATTAATTTAATCCACAGAGAAAAACAAACATAAACACCAACACACATC
CACCTCAAGGGGGAGAAAAAAAGGAAATGAAGAGGAAGAGATGAGAAAAG
TTTTTCCTCATTTTAAAAAAATTTGCCAAACGATACTCAATGACAGCCGT
CCATAGATGCGAAGGATCTGTGCCGTTATATGAAATCAAACTCTCCCTCC
CTCCCCAACTCCCCCCCTCCCTCCCGTGCTCATGCACTTACTCGGCGTAC
TGGCAAGCCTCATACCCATGCCGCTCGTCCTCGCACTTCCAGGGTAGAAA
AAACGTCACGCGCCGGCATCTAAGGGAAAAAAAGGAATGAAAGTGAGTGC
TGAAACCACTAGAGTGAGAGGAAATGGGAATAATATCGTCGTCATGCCGC
TAGCCCTCACTTAAGTCGTATACAAGATGCTCCACCCTTTTCACAATGGC
ACATACTTGTTGAGCGGGATGAGGAGGTGGGCGCAAGCATCTCTCAGGGC
AAGATCAATCTGCCCCTTGTCCATCTCCTCCTTGGTGGCCTTTACCTCTG
TTTTGCCAAAGCGTTGGTTGGGTCAGAGAGGATGTGAGAAGGAGGCCTCA
ACGGGCATATGACACACAGGGCGCTCACCTGAAACAGTCATCCTTGCTGG
CTGGCAAAAGAGGAGGTTCTCGCGCGCCTTGTCCCAGCGACGCTCCCTGT
CGCATACGTGGGGTCGTGCGTGAAGATGGTGGGTCTAAAAGCGTGAAGGC
CCGGGGGACTTTGGTATCAAAGGCATGATGTTGAAAATCTCACGGCTTAA
GTCATCACCGCCCCTTTCTTCGGCAGTCTCCGAGCACAAACGCAACACCC
AAGAAGTTCCCTTGGAAGCACACGCGCCAGACCTTCCTGTCGTGATTGGT
ATGCTGTGTTGCATCGGACACAATTTTGCCCTGCCTTTTCTCAGATCTGG
TCGCATATAGATTGATAAACTCCTCACTTGCTTCTGCATCGGTTTCA
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Coding sequence (CDS) from alignment at scaffold_1:389777..392473+

>mRNA_1364 ID=mRNA_1364|Name=jgi.p|Nanoce1779_2|535366|organism=Nannochloropsis oceanica|type=CDS|length=1416bp|location=Sequence derived from alignment at scaffold_1:389777..392473+ (Nannochloropsis oceanica)
ATGGCGGACGAGGACGGCAAGCTGGTGGCTGTGATTGGGGACGAGGACAC
CGTCACAGGCTTTTTGTTGGCGGGTGTGGGGCACCGTACGATGGAAGGCG
CCAATTTTTTGGTCGTCAAAAATGATACACCCGCGTCGGTGGTGGAGGAG
GCGTTCAACAGGATGGTGGACCGGGATGACATCGGCATTGTGCTCATCAA
CCAGCACATTGCCAACGAGATCCGACACGTGATCAGGGCCTACTCCAAGA
CCATCCCAACCGTCCTCGAAATCCCTTCGAAAGACCACCCGTATGACCCC
GAAGAGGACAGTATCATGCAACGCGTCACCCTCATGACGGGCGGGGCAAT
GTAGATGGCGGACGAGGACGGCAAGCTGGTGGCTGTGATTGGGGACGAGG
ACACCGTCACAGGCTTTTTGTTGGCGGGTGTGGGGCACCGTACGATGGAA
GGCGCCAATTTTTTGGTCGTCAAAAATGATACACCCGCGTCGGTGGTGGA
GGAGGCGTTCAACAGGATGGTGGACCGGGATGACATCGGCATTGTGCTCA
TCAACCAGCACATTGCCAACGAGATCCGACACGTGATCAGGGCCTACTCC
AAGACCATCCCAACCGTCCTCGAAATCCCTTCGAAAGACCACCCGTATGA
CCCCGAAGAGGACAGTATCATGCAACGCGTCACCCTCATGACGGGCGGGG
CAATGTAGATGGCGGACGAGGACGGCAAGCTGGTGGCTGTGATTGGGGAC
GAGGACACCGTCACAGGCTTTTTGTTGGCGGGTGTGGGGCACCGTACGAT
GGAAGGCGCCAATTTTTTGGTCGTCAAAAATGATACACCCGCGTCGGTGG
TGGAGGAGGCGTTCAACAGGATGGTGGACCGGGATGACATCGGCATTGTG
CTCATCAACCAGCACATTGCCAACGAGATCCGACACGTGATCAGGGCCTA
CTCCAAGACCATCCCAACCGTCCTCGAAATCCCTTCGAAAGACCACCCGT
ATGACCCCGAAGAGGACAGTATCATGCAACGCGTCACCCTCATGACGGGC
GGGGCAATGTAGATGGCGGACGAGGACGGCAAGCTGGTGGCTGTGATTGG
GGACGAGGACACCGTCACAGGCTTTTTGTTGGCGGGTGTGGGGCACCGTA
CGATGGAAGGCGCCAATTTTTTGGTCGTCAAAAATGATACACCCGCGTCG
GTGGTGGAGGAGGCGTTCAACAGGATGGTGGACCGGGATGACATCGGCAT
TGTGCTCATCAACCAGCACATTGCCAACGAGATCCGACACGTGATCAGGG
CCTACTCCAAGACCATCCCAACCGTCCTCGAAATCCCTTCGAAAGACCAC
CCGTATGACCCCGAAGAGGACAGTATCATGCAACGCGTCACCCTCATGAC
GGGCGGGGCAATGTAG
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Synonyms
Publications