jgi.p|Nanoce1779_2|571865, mRNA_1362 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571865
Unique NamemRNA_1362
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1115
Alignment locationscaffold_1:386902..388016 -

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Properties
Property NameValue
TranscriptId571951
TrackFilteredModels2
ProteinId571865
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:386902..388016 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571865gene_1362Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571865mRNA_1362-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1362CDS_1362Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1362 ID=mRNA_1362|Name=jgi.p|Nanoce1779_2|571865|organism=Nannochloropsis oceanica|type=mRNA|length=1115bp
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGGACTTCTT
TCACCGCCGCCATGCCGAATGTACAGGAAAGGGGTGGGGTGGAAAGGAGG
AGGAAGGAAGAACTGAAGATCTTTGTTGGGAAGGAGGGGAAAGAGGAGGA
GGATGATTGGGCGGACGAGGAAGAGATTGTAGGTTTGTTGGAGAGGAATG
AGGCTGAGCTGCAGGAAGCAGGTCTAATCAAATCGTTGTGCGCGTCACAA
CGATAGTAGCGCCAGCTGGTACATATACCTGGAATGTGAAGTTTGCCTGT
TGTTTGACAAGCAAGAGAAAGAATACAGCAACTGGATTGAAAATGGTCGT
AATAATAAAAACAAAAATAGCACCAGTGAATGTAGAAGAGGCATTTATTT
ATGAGGAGGAAAATCAAGATAGCGAGACAAACAAATGTACACGGATGACA
AAGTTTTAAACGAGGAACCATTTTATCCCAATATTTCCAAAAGAGAAGTT
GACGGAGACATGCAATTTTGCAGCATACCATACATATTTAAAAAATCACG
AAACGTGCATGTATTAATGTTCACGAATTAGAAACCACTGTCCTTTCGCT
CTTTCTTTTCGTCGTCTTGTCGCGACCCACTCTCTTTTTACCTTTTCCAG
TGCTCCAGCGGCATATGTTCGATTATTCTTTTGCTTCCACTTTTCACCTT
TTTGTCCTTCTCTTTCTTTTTCTTGATTTTCTTTCCACTCATTTTATTTT
TTTCCATCGTTCCGCCCTCTCCCTCCATCCATGCACTAGCCCTTCATTTA
CTCCCTTCATGTCCTTCATTTTACCCGGGCAGCAATCTCCTTCAATTTCC
TTCCCTCCCTCACTATCTCCTCTTTGATGGCTTCTTCACGTCGGTGTTCT
CTACCCATCTACATTGTGCACCCACGCACAAAAACGCGCACTCGCACACA
TACACACTCCTTCAAACGCTCCAGCCCCTGCTCCCCCACAACTATCTAAC
CCCCTTTCGCGTCAACAACGGCGACGCCCCCTGCTGCTGCTGCTGCTGCT
TCGTCGGAGTCCCGAATCCCCCCAGACCTCCCCCCAATCCCGGCACCGCT
TTCCTTAACTCCCCC
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protein sequence of jgi.p|Nanoce1779_2|571865

>mRNA_1362-protein ID=mRNA_1362-protein|Name=jgi.p|Nanoce1779_2|571865|organism=Nannochloropsis oceanica|type=polypeptide|length=71bp
MFDYSFASTFHLFVLLFLFLDFLSTHFIFFHRSALSLHPCTSPSFTPFMS
FILPGQQSPSISFPPSLSPL*
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mRNA from alignment at scaffold_1:386902..388016-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1362 ID=mRNA_1362|Name=jgi.p|Nanoce1779_2|571865|organism=Nannochloropsis oceanica|type=mRNA|length=1115bp|location=Sequence derived from alignment at scaffold_1:386902..388016- (Nannochloropsis oceanica)
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGGACTTCTT
TCACCGCCGCCATGCCGAATGTACAGGAAAGGGGTGGGGTGGAAAGGAGG
AGGAAGGAAGAACTGAAGATCTTTGTTGGGAAGGAGGGGAAAGAGGAGGA
GGATGATTGGGCGGACGAGGAAGAGATTGTAGGTTTGTTGGAGAGGAATG
AGGCTGAGCTGCAGGAAGCAGGTCTAATCAAATCGTTGTGCGCGTCACAA
CGATAGTAGCGCCAGCTGGTACATATACCTGGAATGTGAAGTTTGCCTGT
TGTTTGACAAGCAAGAGAAAGAATACAGCAACTGGATTGAAAATGGTCGT
AATAATAAAAACAAAAATAGCACCAGTGAATGTAGAAGAGGCATTTATTT
ATGAGGAGGAAAATCAAGATAGCGAGACAAACAAATGTACACGGATGACA
AAGTTTTAAACGAGGAACCATTTTATCCCAATATTTCCAAAAGAGAAGTT
GACGGAGACATGCAATTTTGCAGCATACCATACATATTTAAAAAATCACG
AAACGTGCATGTATTAATGTTCACGAATTAGAAACCACTGTCCTTTCGCT
CTTTCTTTTCGTCGTCTTGTCGCGACCCACTCTCTTTTTACCTTTTCCAG
TGCTCCAGCGGCATATGTTCGATTATTCTTTTGCTTCCACTTTTCACCTT
TTTGTCCTTCTCTTTCTTTTTCTTGATTTTCTTTCCACTCATTTTATTTT
TTTCCATCGTTCCGCCCTCTCCCTCCATCCATGCACTAGCCCTTCATTTA
CTCCCTTCATGTCCTTCATTTTACCCGGGCAGCAATCTCCTTCAATTTCC
TTCCCTCCCTCACTATCTCCTCTTTGATGGCTTCTTCACGTCGGTGTTCT
CTACCCATCTACATTGTGCACCCACGCACAAAAACGCGCACTCGCACACA
TACACACTCCTTCAAACGCTCCAGCCCCTGCTCCCCCACAACTATCTAAC
CCCCTTTCGCGTCAACAACGGCGACGCCCCCTGCTGCTGCTGCTGCTGCT
TCGTCGGAGTCCCGAATCCCCCCAGACCTCCCCCCAATCCCGGCACCGCT
TTCCTTAACTCCCCC
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Coding sequence (CDS) from alignment at scaffold_1:386902..388016-

>mRNA_1362 ID=mRNA_1362|Name=jgi.p|Nanoce1779_2|571865|organism=Nannochloropsis oceanica|type=CDS|length=213bp|location=Sequence derived from alignment at scaffold_1:386902..388016- (Nannochloropsis oceanica)
ATGTTCGATTATTCTTTTGCTTCCACTTTTCACCTTTTTGTCCTTCTCTT
TCTTTTTCTTGATTTTCTTTCCACTCATTTTATTTTTTTCCATCGTTCCG
CCCTCTCCCTCCATCCATGCACTAGCCCTTCATTTACTCCCTTCATGTCC
TTCATTTTACCCGGGCAGCAATCTCCTTCAATTTCCTTCCCTCCCTCACT
ATCTCCTCTTTGA
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Synonyms
Publications