jgi.p|Nanoce1779_2|624423, mRNA_1361 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|624423
Unique Name	mRNA_1361
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2124
Alignment location	scaffold_1:384597..386900 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	624509
Track	FilteredModels2
ProteinId	624423

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:384597..386900 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|624423	gene_1361	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|624423	mRNA_1361-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1361	CDS_1361	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:384597..386900+
coding sequence from alignment at scaffold_1:384597..386900+

mRNA sequence

>mRNA_1361 ID=mRNA_1361|Name=jgi.p|Nanoce1779_2|624423|organism=Nannochloropsis oceanica|type=mRNA|length=2124bp
AAATCAACAGGTGTGGCCCGTCGCTGCCTGTTTTCTCTTCACTGCCGGAT
TTATTCAAGCGACCAAGAGACAGGCCGTTGCTGTCTGTTGCAGGGAGAGG
CAGCGTTGCGTGAGGGGAGGGATGGAGTCGGCTCCGACCAAAATAAGAAG
ACAGTGAACGGCATAATTAAAAAAAAAAGGAAGAAGGTCGTGATTGCCCT
GGACGGCAGGAACGAGCAAGTTAGAGGTCAAGGCACCCACAAAGAGGGGG
AAGAGGAAGGAGGAAAATAAGAACACCAGCGTACGACCTGCCTCCCCTAC
ATCCTCCCTACCATGGCCGGTAATAACCCCACAGGCCAGAGCGGCCTCGG
GCCTTGGATGCTTAATGTGCGGCTTGATCGACCCGTGGAAGGCTGTCTGA
TCAACCCGCACGCTGTGCTTTACCAAAAGGGGGAGAAAGGGCAGCAGCGA
GACAAGGAACGCTTCACCTACTGCTTCCGCTGGCTCCGAGGCCCCGAGCG
CCCCGTTTGTGCGAACGCGTCGTGTCCACGCGCTCAGTCTTTCAGTCCCA
TTCAATGGAGCAAATTCGCACGAAAGGGTTGCTCGTTTTTGATTCAATGC
GTGGTATGTGCCAAGCTGCGGTTGCCTCGGCATCACTCTGTATTTTGTAC
TTTGCAATGTTTCCAGGACGCGTGGAAAAGCCACAAGCGAATCCACCAGC
AAATGGGGCGCAACCGCAGCACCGGTGGCAGCAGTGCTGATGGCCTCCAA
GATGCGTCAATCGACCCTTTGCAGGACGGTGAAGAAGAGACGCCCCCTCC
CCCTCCTCTCGACTACCTGACCGCCGACACCTCCGAAGACGAGTGGCAAG
AAGTTAGCACCGACCGTGCATACTGCCCCGAGCCGTCCGATATTGGCCGC
TGCCTCAAGTTGGAAATCCGCGTGCTCAATCCCGATGGCACCCTCTTCTT
CGGCCCACGCCTCACAGAAACCGAACCTGTCCTGTCGGCTCCTCCCCCCC
CGCCCCAACGGCCGTTAATGCAGGTTAAAAACCTGGCCGCTGCCGCGGGA
GGGCTCAAGTTTCGAATAGCCACGTATAATATGCTGGCGGAGATTTATGC
GACGCAGGCGATGTACCCATATTGTGACCATTGGGCGTTGAATTGGAACT
ATCGAAAGATAAATTTGTTACGGGAGATGCGGGAGGTGGCGGCAGACGTC
CTCTTCCTTCAGGAGGTGCAGGCCGATCATTATGAGCAACACATCCTGCC
GGAGATGAGCGAGGAGGGATACGATGGCCTGTACAAGCACAAAACGAGGG
AGAGTATGGGGGCTGTGGGCAAAGTGGATGGGTGTGCGATTCTGTGGCGG
AGGGGCAAGTTCCGATTAGCTGACAAGTACCTACTGGAATTTAACGACTG
CGCCCGCAGGCAAGCCTCTGAGCTGGGGCTTAGCCACGACCAGAAGAACA
TCTTCCTCACCCGCGTCTTGAAGGACAATATCGCCCAGGCGGTGGTGTTG
GAAGTGCTAGGTCGACCGAGGGGTGGGAGACACGGAGGGAACATGGTCTG
TATGGCCAATACCCATCTCTACTCTCACCCCGAATACCCGGATGTGAAGC
TGTGGCAGTGCCACCAGCTACTGCAGTGGCTTGAGGGTTTGACGCTGCCC
ACCAATATGCCCTTGGTTCTGTGCGGGGACTTCAACTCGGAGCCCTCCTC
GGCGGTGTATGAGTTGGTGTCGACTCAAGTGGTGGGAGGCGACCATCCCG
ACCTGCAGTTGCTGCAGCAGGCGGCGTCGAATGGGGAGGCGACGGAGTTG
TTGCGTTCAGTTTTGTTGTCGGACCATCATCACCAGGTGGCGCATTCACT
CTTGTTGAAGAGCGCGTATGCTACCATGTTGGGGGATGAACCGCGGTTTA
CAAACTTCACTGTGGGGTACGTGGGTGCCCTGGATTACATTTGGTTCAGT
GGCATGCACTGGCGTCCCCTCACCGTAGCCCCGATCCCAGAAGAACACGA
CCTGGCCCTGACGGGTGACGCGTTGCCCAACGCCTTGTACCCTTCGGATC
ACTTGATGTTGTTTTCCGATCTGCAGTTTGCAGCCGGGACCGGAGGAGGG
GGGGCGGGGGGGGGGGAGGGCTGA

protein sequence of jgi.p|Nanoce1779_2|624423

>mRNA_1361-protein ID=mRNA_1361-protein|Name=jgi.p|Nanoce1779_2|624423|organism=Nannochloropsis oceanica|type=polypeptide|length=604bp
MAGNNPTGQSGLGPWMLNVRLDRPVEGCLINPHAVLYQKGEKGQQRDKER
FTYCFRWLRGPERPVCANASCPRAQSFSPIQWSKFARKGCSFLIQCVVCA
KLRLPRHHSVFCTLQCFQDAWKSHKRIHQQMGRNRSTGGSSADGLQDASI
DPLQDGEEETPPPPPLDYLTADTSEDEWQEVSTDRAYCPEPSDIGRCLKL
EIRVLNPDGTLFFGPRLTETEPVLSAPPPPPQRPLMQVKNLAAAAGGLKF
RIATYNMLAEIYATQAMYPYCDHWALNWNYRKINLLREMREVAADVLFLQ
EVQADHYEQHILPEMSEEGYDGLYKHKTRESMGAVGKVDGCAILWRRGKF
RLADKYLLEFNDCARRQASELGLSHDQKNIFLTRVLKDNIAQAVVLEVLG
RPRGGRHGGNMVCMANTHLYSHPEYPDVKLWQCHQLLQWLEGLTLPTNMP
LVLCGDFNSEPSSAVYELVSTQVVGGDHPDLQLLQQAASNGEATELLRSV
LLSDHHHQVAHSLLLKSAYATMLGDEPRFTNFTVGYVGALDYIWFSGMHW
RPLTVAPIPEEHDLALTGDALPNALYPSDHLMLFSDLQFAAGTGGGGAGG
GEG*

mRNA from alignment at scaffold_1:384597..386900+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1361 ID=mRNA_1361|Name=jgi.p|Nanoce1779_2|624423|organism=Nannochloropsis oceanica|type=mRNA|length=2304bp|location=Sequence derived from alignment at scaffold_1:384597..386900+ (Nannochloropsis oceanica)
AAATCAACAGGTGTGGCCCGTCGCTGCCTGTTTTCTCTTCACTGCCGGAT
TTATTCAAGCGACCAAGAGACAGGCCGTTGCTGTCTGTTGCAGGGAGAGG
CAGCGTTGCGTGAGGGGAGGGATGGAGTCGGCTCCGACCAAAATAAGAAG
ACAGTGAACGGCATAATTAAAAAAAAAAGGAAGAAGGTCGTGATTGCCCT
GGACGGCAGGAACGAGCAAGTTAGAGGTCAAGGCACCCACAAAGAGGGGG
AAGAGGAAGGAGGAAAATAAGAACACCAGCGTACGACCTGCCTCCCCTAC
ATCCTCCCTACCATGGCCGGTAATAACCCCACAGGCCAGAGCGGCCTCGG
GCCTTGGATGCTTAATGTGCGGCTTGATCGACCCGTGGAAGGCTGTCTGA
TCAACCCGCACGCTGTGCTTTACCAAAAGGGGGAGAAAGGGCAGCAGCGA
GACAAGGAACGCTTCACCTACTGCTTCCGCTGGCTCCGAGGCCCCGAGCG
CCCCGTTTGTGCGAACGCGTCGTGTCCACGCGCTCAGTCTTTCAGTCCCA
TTCAATGGAGCAAATTCGCACGAAAGGGTTGCTCGTTTTTGATTCAATGC
GTGGTATGTGCCAAGCTGCGGTTGCCTCGGCATCACTCTGTATTTTGTAC
TTTGCAATGTTTCCAGGACGCGTGGAAAAGCCACAAGCGAATCCACCAGC
AAATGGGGCGCAACCGCAGCACCGGTGGCAGCAGTGCTGATGGCCTCCAA
GATGCGTCAATCGACCCTTTGCAGGACGGTGAAGAAGAGACGCCCCCTCC
CCCTCCTCTCGACTACCTGACCGCCGACACCTCCGAAGACGAGTGGCAAG
AAGTTAGCACCGACCGTGCATACTGCCCCGAGCCGTCCGATATTGGCCGC
TGCCTCAAGTTGGAAATCCGCGTGCTCAATCCCGATGGCACCCTCTTCTT
CGGCCCACGCCTCACAGAAACCGAACCTGTCCTGTCGGCTCCTCCCCCCC
CGCCCCAACGGCCGTTAATGCAGGTTAAAAACCTGGCCGCTGCCGCGGGA
GGGCTCAAGTTTCGAATAGCCACGTATAATATGCTGGCGGAGATTTATGC
GACGCAGGCGATGTACCCATATTGTGACCATTGGGCGTTGAATTGGAACT
ATCGAAAGATAAATTTGTTACGGGAGATGCGGGAGGTGGCGGCAGACGTC
CTCTTCCTTCAGGAGGTGCAGGCCGATCATTATGAGCAACACATCCTGCC
GGAGATGAGCGAGGAGGGATACGATGGCCTGTACAAGCACAAAACGAGGG
AGAGTATGGGGGCTGTGGGCAAAGTGGATGGGTGTGCGATTCTGTGGCGG
AGGGGCAAGTTCCGATTAGCTGGTACGTGGGATGGGGGGGAGAAGAGCGC
GGAAGGGAGGGACGGACGGACGGCGAGGCGTTTTTGTAAAAGGTTTGATG
GTGTGTGTGTAGAAGTGAGATAATGGCCTGTTATGTGAGAGCGTGTCAGG
GTAGTTTGGTGCACTAATCCTCCCTCCCTCCCTCCCCTCCCTCCCTAAAT
AGACAAGTACCTACTGGAATTTAACGACTGCGCCCGCAGGCAAGCCTCTG
AGCTGGGGCTTAGCCACGACCAGAAGAACATCTTCCTCACCCGCGTCTTG
AAGGACAATATCGCCCAGGCGGTGGTGTTGGAAGTGCTAGGTCGACCGAG
GGGTGGGAGACACGGAGGGAACATGGTCTGTATGGCCAATACCCATCTCT
ACTCTCACCCCGAATACCCGGATGTGAAGCTGTGGCAGTGCCACCAGCTA
CTGCAGTGGCTTGAGGGTTTGACGCTGCCCACCAATATGCCCTTGGTTCT
GTGCGGGGACTTCAACTCGGAGCCCTCCTCGGCGGTGTATGAGTTGGTGT
CGACTCAAGTGGTGGGAGGCGACCATCCCGACCTGCAGTTGCTGCAGCAG
GCGGCGTCGAATGGGGAGGCGACGGAGTTGTTGCGTTCAGTTTTGTTGTC
GGACCATCATCACCAGGTGGCGCATTCACTCTTGTTGAAGAGCGCGTATG
CTACCATGTTGGGGGATGAACCGCGGTTTACAAACTTCACTGTGGGGTAC
GTGGGTGCCCTGGATTACATTTGGTTCAGTGGCATGCACTGGCGTCCCCT
CACCGTAGCCCCGATCCCAGAAGAACACGACCTGGCCCTGACGGGTGACG
CGTTGCCCAACGCCTTGTACCCTTCGGATCACTTGATGTTGTTTTCCGAT
CTGCAGTTTGCAGCCGGGACCGGAGGAGGGGGGGCGGGGGGGGGGGAGGG
CTGA

Coding sequence (CDS) from alignment at scaffold_1:384597..386900+

>mRNA_1361 ID=mRNA_1361|Name=jgi.p|Nanoce1779_2|624423|organism=Nannochloropsis oceanica|type=CDS|length=3624bp|location=Sequence derived from alignment at scaffold_1:384597..386900+ (Nannochloropsis oceanica)
ATGGCCGGTAATAACCCCACAGGCCAGAGCGGCCTCGGGCCTTGGATGCT
TAATGTGCGGCTTGATCGACCCGTGGAAGGCTGTCTGATCAACCCGCACG
CTGTGCTTTACCAAAAGGGGGAGAAAGGGCAGCAGCGAGACAAGGAACGC
TTCACCTACTGCTTCCGCTGGCTCCGAGGCCCCGAGCGCCCCGTTTGTGC
GAACGCGTCGTGTCCACGCGCTCAGTCTTTCAGTCCCATTCAATGGAGCA
AATTCGCACGAAAGGGTTGCTCGTTTTTGATTCAATGCGTGGTATGTGCC
AAGCTGCGGTTGCCTCGGCATCACTCTGTATTTTGTACTTTGCAATGTTT
CCAGGACGCGTGGAAAAGCCACAAGCGAATCCACCAGCAAATGGGGCGCA
ACCGCAGCACCGGTGGCAGCAGTGCTGATGGCCTCCAAGATGCGTCAATC
GACCCTTTGCAGGACGGTGAAGAAGAGACGCCCCCTCCCCCTCCTCTCGA
CTACCTGACCGCCGACACCTCCGAAGACGAGTGGCAAGAAGTTAGCACCG
ACCGTGCATACTGCCCCGAGCCGTCCGATATTGGCCGCTGCCTCAAGTTG
GAAATCCGCGTGCTCAATCCCGATGGCACCCTCTTCTTCGGCCCACGCCT
CACAGAAACCGAACCTGTCCTGTCGGCTCCTCCCCCCCCGCCCCAACGGC
CGTTAATGCAGGTTAAAAACCTGGCCGCTGCCGCGGGAGGGCTCAAGTTT
CGAATAGCCACGTATAATATGCTGGCGGAGATTTATGCGACGCAGGCGAT
GTACCCATATTGTGACCATTGGGCGTTGAATTGGAACTATCGAAAGATAA
ATTTGTTACGGGAGATGCGGGAGGTGGCGGCAGACGTCCTCTTCCTTCAG
GAGGTGCAGGCCGATCATTATGAGCAACACATCCTGCCGGAGATGAGCGA
GGAGGGATACGATGGCCTGTACAAGCACAAAACGAGGGAGAGTATGGGGG
CTGTGGGCAAAGTGGATGGGTGTGCGATTCTGTGGCGGAGGGGCAAGTTC
CGATTAGCTGACAAGTACCTACTGGAATTTAACGACTGCGCCCGCAGGCA
AGCCTCTGAGCTGGGGCTTAGCCACGACCAGAAGAACATCTTCCTCACCC
GCGTCTTGAAGGACAATATCGCCCAGGCGGTGGTGTTGGAAGTGCTAGGT
CGACCGAGGGGTGGGAGACACGGAGGGAACATGGTCTGTATGGCCAATAC
CCATCTCTACTCTCACCCCGAATACCCGGATGTGAAGCTGTGGCAGTGCC
ACCAGCTACTGCAGTGGCTTGAGGGTTTGACGCTGCCCACCAATATGCCC
TTGGTTCTGTGCGGGGACTTCAACTCGGAGCCCTCCTCGGCGGTGTATGA
GTTGGTGTCGACTCAAGTGGTGGGAGGCGACCATCCCGACCTGCAGTTGC
TGCAGCAGGCGGCGTCGAATGGGGAGGCGACGGAGTTGTTGCGTTCAGTT
TTGTTGTCGGACCATCATCACCAGGTGGCGCATTCACTCTTGTTGAAGAG
CGCGTATGCTACCATGTTGGGGGATGAACCGCGGTTTACAAACTTCACTG
TGGGGTACGTGGGTGCCCTGGATTACATTTGGTTCAGTGGCATGCACTGG
CGTCCCCTCACCGTAGCCCCGATCCCAGAAGAACACGACCTGGCCCTGAC
GGGTGACGCGTTGCCCAACGCCTTGTACCCTTCGGATCACTTGATGTTGT
TTTCCGATCTGCAGTTTGCAGCCGGGACCGGAGGAGGGGGGGCGGGGGGG
GGGGAGGGCTGAATGGCCGGTAATAACCCCACAGGCCAGAGCGGCCTCGG
GCCTTGGATGCTTAATGTGCGGCTTGATCGACCCGTGGAAGGCTGTCTGA
TCAACCCGCACGCTGTGCTTTACCAAAAGGGGGAGAAAGGGCAGCAGCGA
GACAAGGAACGCTTCACCTACTGCTTCCGCTGGCTCCGAGGCCCCGAGCG
CCCCGTTTGTGCGAACGCGTCGTGTCCACGCGCTCAGTCTTTCAGTCCCA
TTCAATGGAGCAAATTCGCACGAAAGGGTTGCTCGTTTTTGATTCAATGC
GTGGTATGTGCCAAGCTGCGGTTGCCTCGGCATCACTCTGTATTTTGTAC
TTTGCAATGTTTCCAGGACGCGTGGAAAAGCCACAAGCGAATCCACCAGC
AAATGGGGCGCAACCGCAGCACCGGTGGCAGCAGTGCTGATGGCCTCCAA
GATGCGTCAATCGACCCTTTGCAGGACGGTGAAGAAGAGACGCCCCCTCC
CCCTCCTCTCGACTACCTGACCGCCGACACCTCCGAAGACGAGTGGCAAG
AAGTTAGCACCGACCGTGCATACTGCCCCGAGCCGTCCGATATTGGCCGC
TGCCTCAAGTTGGAAATCCGCGTGCTCAATCCCGATGGCACCCTCTTCTT
CGGCCCACGCCTCACAGAAACCGAACCTGTCCTGTCGGCTCCTCCCCCCC
CGCCCCAACGGCCGTTAATGCAGGTTAAAAACCTGGCCGCTGCCGCGGGA
GGGCTCAAGTTTCGAATAGCCACGTATAATATGCTGGCGGAGATTTATGC
GACGCAGGCGATGTACCCATATTGTGACCATTGGGCGTTGAATTGGAACT
ATCGAAAGATAAATTTGTTACGGGAGATGCGGGAGGTGGCGGCAGACGTC
CTCTTCCTTCAGGAGGTGCAGGCCGATCATTATGAGCAACACATCCTGCC
GGAGATGAGCGAGGAGGGATACGATGGCCTGTACAAGCACAAAACGAGGG
AGAGTATGGGGGCTGTGGGCAAAGTGGATGGGTGTGCGATTCTGTGGCGG
AGGGGCAAGTTCCGATTAGCTGACAAGTACCTACTGGAATTTAACGACTG
CGCCCGCAGGCAAGCCTCTGAGCTGGGGCTTAGCCACGACCAGAAGAACA
TCTTCCTCACCCGCGTCTTGAAGGACAATATCGCCCAGGCGGTGGTGTTG
GAAGTGCTAGGTCGACCGAGGGGTGGGAGACACGGAGGGAACATGGTCTG
TATGGCCAATACCCATCTCTACTCTCACCCCGAATACCCGGATGTGAAGC
TGTGGCAGTGCCACCAGCTACTGCAGTGGCTTGAGGGTTTGACGCTGCCC
ACCAATATGCCCTTGGTTCTGTGCGGGGACTTCAACTCGGAGCCCTCCTC
GGCGGTGTATGAGTTGGTGTCGACTCAAGTGGTGGGAGGCGACCATCCCG
ACCTGCAGTTGCTGCAGCAGGCGGCGTCGAATGGGGAGGCGACGGAGTTG
TTGCGTTCAGTTTTGTTGTCGGACCATCATCACCAGGTGGCGCATTCACT
CTTGTTGAAGAGCGCGTATGCTACCATGTTGGGGGATGAACCGCGGTTTA
CAAACTTCACTGTGGGGTACGTGGGTGCCCTGGATTACATTTGGTTCAGT
GGCATGCACTGGCGTCCCCTCACCGTAGCCCCGATCCCAGAAGAACACGA
CCTGGCCCTGACGGGTGACGCGTTGCCCAACGCCTTGTACCCTTCGGATC
ACTTGATGTTGTTTTCCGATCTGCAGTTTGCAGCCGGGACCGGAGGAGGG
GGGGCGGGGGGGGGGGAGGGCTGA

Synonyms

Publications