jgi.p|Nanoce1779_2|576340, mRNA_136 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576340
Unique Name	mRNA_136
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2613
Alignment location	scaffold_3:354835..357447 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	576426
Track	FilteredModels2
ProteinId	576340

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:354835..357447 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576340	gene_136	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576340	mRNA_136-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_136	CDS_136	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:354835..357447+
coding sequence from alignment at scaffold_3:354835..357447+

mRNA sequence

>mRNA_136 ID=mRNA_136|Name=jgi.p|Nanoce1779_2|576340|organism=Nannochloropsis oceanica|type=mRNA|length=2613bp
ATGGACTGTTGCGCCAAGGTAGGGCAATGGGAGGCAGCCTTGACGTTGAT
TCCTGAGATGGAATCGGCGGGGTTGAGGCCGGATCGGGTAGCCCTTAATA
CCGCGATTGATGCTTGTGCGAAGGGAGGGCAGTGGCAACGGGCGTTGGAG
ATTCTAAAAGGGATGGATGAGCCGAACTTGGTCAGTTATAACAGTGCCTT
GGATTCATGTGCCAAGGGGGGGAGATGGAAGGAGGCCATGGACCTATTGG
AGGAGATGCATGCACAGGCGAGGAAGGGGGGGAAGATGAAGAAGCAGCAG
GAGAGGAAGAGCAGTGGTATTAGTAGTAGTGACAGTAGCGACAGCAGCAG
TGGCACCAAGAGCAGCAACAATGCTCCGGAATGTCGGAGTGGGATAAAAG
CTGCTGTGTGGCCCAATATCATTTCATACAACACTGTGATTGAGGCATGT
GCTAAGAAAGCTAAGTACGAAGAGGCCTTGCTCGTCCTGCGCTCCATGCG
AGGAAAAAAATCTCCTGCTGCTGCTGCTGCTGCTGCCCCTGTCACCACTC
GTGGTCGGAACAATACGACAAACAGTAGGAAAAAGATGCGTCTTCATCAA
CCCCACCCCTACACCCCTGAACCCGACGTTGTGTCCTACAATTCTGCCAT
TAAGGCATGTGGTAGGGCTGGACAGTGGAAGCTCGCCCTTGTCCTTTTCT
CCGAGATGAAGCAGCCAACCACCGCCACCACCAGCAAGAACAACACCAAC
AGCAGCAGTAGCAGCAGCAAGCGAGGCAGCAGCAACAATAGTATGAATGT
TCCCCCTGAAATCATGACCTACAATGCGGTCATCGCCGCCTGTGCCAAAT
CTGGCCGCCTTAATGAAGCCCTGGATCTCCTGAGGGAATGTGGAGAAGCC
TCAAACGTGGTCACCTACAATTCAGCAATGCAAGCCTGTTGCGCAGGAGG
AAGGGCCGATCTCGCCCTGCAGCTGCTCCAGGTCATGAAAGCCAATGGCG
TGGAGCCTGATGTAGTAAGCTACACGACTGTGATGCAACGGTCTTCTGTG
GATGTTGCTACTGGAGTTATGAATCGCATGCGGGCCGCGGGGTTGAAAGT
GGGGGTGGTGACGTACAATTCGTTATTGAATGCTTGTGCGCGGGAGGGAG
ACTGGCGGACGGCCCTTGGAATACTGGAGGAGATGGATCATCAGTCAGTG
GCGCCGAATGTGGTCAGCTATACGCTGGCGATGGAGGCATGTGGAAGGGG
AGGACAATGGCAGTCTGCGTTGGGGGTGTTGAATGAAATGACTGTACGAG
GGGTGCCGCTTGATTCGAAGGCGTGTCAGACTGCAATTGATGTGTGTGCG
AAAGTGCAGGATTGGAATAAGGCTCTGAGTTTGCTGCGCGAGGTGGGTGG
ACGAGGGAATGATGGTTGTGCGGCTGAGAGCAGCAGCAGCAGTAATAGTA
ATGTCGTGACGAGAGGATTGTATGAGCGGGCCATGGCTGCGTTTGGCAAG
GCGGGAGAGTGGGAGAAAGTTTTGTGGTTACTTGAGAGGACGGAGAACCC
TGATCGGAAAGCGACGAACGTGGCCATGCGTGCATGTGCGCATGCTGGGA
GGTGGGAGGAAGCTTTGGGGTTGCTGCAGAACATGACAGCACAGGGGTTG
AGTCCTGATGAGTGGAGCTACAATACTGCGATTCACGCGTGTGCCCAGGC
AGGACAAGCAGGACAGGCCTTGGCTTTGCTTAAAGAGATGGATGAAGAAA
AGGTTGCGCCAGATGTGGTGAGTTACACAACAGCAATGGATGCATGCGCC
TCTGTTGGAGATGTGGACACGGCCCAGTGCTTATTGACGGAGATGGTAGA
AAGGGGGGTGATACCTAATCATCGTAGTTTCAATGCTATTATGAGTGCGT
ACGGAAACGCCGGGCAGGCAACTGAAGCGATTGCTATGCTGGGTCAGATG
GCAGAGCATGGGCTGGCCCCGGACGTGAAGAGCTATACACTCGCGATGGA
TATTTGCTTGAGACAGGGCCTCTGGCAGGTGGCGTTGAAAATTGTGGACC
GCATGCGGGCAACATTTGTGAGGCTGGATGCAATTTCGTACGGGAAGGCC
ATTTACGCTGCACATATTGGGCATCAGTGGGAGGTGGCGGTGGAGTTTTT
GGATGAAATGGTGGATGAGGGATGGTTGCCGAGCCATCGAAGCTACACCA
TGGTGGTGGAGGCATGTCGTCGCGCGGGGGAGTCACGGCTGGCGGAGGAA
GTGGGACGACGCTGGGCTCGAGATAAGGAGCGGTTGGCTCGGGCAAAGCT
ACTGGATGGGGGAAATGATGGAAGGAGCAGGCCGATGTATGGGAATGGGA
AAGGAAGGAAGAGTAGCAATGGCAGCAACGGCTACGGCATCAGCGACATA
AACACGGATTTTTCGAGCCCATTGCGCCAGGCCTACATATCGAAATCGCG
CGGGCAGCGGCAGCAACAACAGCAACAGCAGCATCAGCAGCAGCGTCTCG
GCTCCTCAACAAGTAATCCTTCATCCGCTTCCAACTCAGCTAGTTTTCTG
TCACGCCCGCAACCACCTCCTTCTGGACTCGGCCCTCAATTTCCTTTTCA
ACCCAAGCGGTAA

protein sequence of jgi.p|Nanoce1779_2|576340

>mRNA_136-protein ID=mRNA_136-protein|Name=jgi.p|Nanoce1779_2|576340|organism=Nannochloropsis oceanica|type=polypeptide|length=871bp
MDCCAKVGQWEAALTLIPEMESAGLRPDRVALNTAIDACAKGGQWQRALE
ILKGMDEPNLVSYNSALDSCAKGGRWKEAMDLLEEMHAQARKGGKMKKQQ
ERKSSGISSSDSSDSSSGTKSSNNAPECRSGIKAAVWPNIISYNTVIEAC
AKKAKYEEALLVLRSMRGKKSPAAAAAAAPVTTRGRNNTTNSRKKMRLHQ
PHPYTPEPDVVSYNSAIKACGRAGQWKLALVLFSEMKQPTTATTSKNNTN
SSSSSSKRGSSNNSMNVPPEIMTYNAVIAACAKSGRLNEALDLLRECGEA
SNVVTYNSAMQACCAGGRADLALQLLQVMKANGVEPDVVSYTTVMQRSSV
DVATGVMNRMRAAGLKVGVVTYNSLLNACAREGDWRTALGILEEMDHQSV
APNVVSYTLAMEACGRGGQWQSALGVLNEMTVRGVPLDSKACQTAIDVCA
KVQDWNKALSLLREVGGRGNDGCAAESSSSSNSNVVTRGLYERAMAAFGK
AGEWEKVLWLLERTENPDRKATNVAMRACAHAGRWEEALGLLQNMTAQGL
SPDEWSYNTAIHACAQAGQAGQALALLKEMDEEKVAPDVVSYTTAMDACA
SVGDVDTAQCLLTEMVERGVIPNHRSFNAIMSAYGNAGQATEAIAMLGQM
AEHGLAPDVKSYTLAMDICLRQGLWQVALKIVDRMRATFVRLDAISYGKA
IYAAHIGHQWEVAVEFLDEMVDEGWLPSHRSYTMVVEACRRAGESRLAEE
VGRRWARDKERLARAKLLDGGNDGRSRPMYGNGKGRKSSNGSNGYGISDI
NTDFSSPLRQAYISKSRGQRQQQQQQQHQQQRLGSSTSNPSSASNSASFL
SRPQPPPSGLGPQFPFQPKR*

mRNA from alignment at scaffold_3:354835..357447+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_136 ID=mRNA_136|Name=jgi.p|Nanoce1779_2|576340|organism=Nannochloropsis oceanica|type=mRNA|length=2613bp|location=Sequence derived from alignment at scaffold_3:354835..357447+ (Nannochloropsis oceanica)
ATGGACTGTTGCGCCAAGGTAGGGCAATGGGAGGCAGCCTTGACGTTGAT
TCCTGAGATGGAATCGGCGGGGTTGAGGCCGGATCGGGTAGCCCTTAATA
CCGCGATTGATGCTTGTGCGAAGGGAGGGCAGTGGCAACGGGCGTTGGAG
ATTCTAAAAGGGATGGATGAGCCGAACTTGGTCAGTTATAACAGTGCCTT
GGATTCATGTGCCAAGGGGGGGAGATGGAAGGAGGCCATGGACCTATTGG
AGGAGATGCATGCACAGGCGAGGAAGGGGGGGAAGATGAAGAAGCAGCAG
GAGAGGAAGAGCAGTGGTATTAGTAGTAGTGACAGTAGCGACAGCAGCAG
TGGCACCAAGAGCAGCAACAATGCTCCGGAATGTCGGAGTGGGATAAAAG
CTGCTGTGTGGCCCAATATCATTTCATACAACACTGTGATTGAGGCATGT
GCTAAGAAAGCTAAGTACGAAGAGGCCTTGCTCGTCCTGCGCTCCATGCG
AGGAAAAAAATCTCCTGCTGCTGCTGCTGCTGCTGCCCCTGTCACCACTC
GTGGTCGGAACAATACGACAAACAGTAGGAAAAAGATGCGTCTTCATCAA
CCCCACCCCTACACCCCTGAACCCGACGTTGTGTCCTACAATTCTGCCAT
TAAGGCATGTGGTAGGGCTGGACAGTGGAAGCTCGCCCTTGTCCTTTTCT
CCGAGATGAAGCAGCCAACCACCGCCACCACCAGCAAGAACAACACCAAC
AGCAGCAGTAGCAGCAGCAAGCGAGGCAGCAGCAACAATAGTATGAATGT
TCCCCCTGAAATCATGACCTACAATGCGGTCATCGCCGCCTGTGCCAAAT
CTGGCCGCCTTAATGAAGCCCTGGATCTCCTGAGGGAATGTGGAGAAGCC
TCAAACGTGGTCACCTACAATTCAGCAATGCAAGCCTGTTGCGCAGGAGG
AAGGGCCGATCTCGCCCTGCAGCTGCTCCAGGTCATGAAAGCCAATGGCG
TGGAGCCTGATGTAGTAAGCTACACGACTGTGATGCAACGGTCTTCTGTG
GATGTTGCTACTGGAGTTATGAATCGCATGCGGGCCGCGGGGTTGAAAGT
GGGGGTGGTGACGTACAATTCGTTATTGAATGCTTGTGCGCGGGAGGGAG
ACTGGCGGACGGCCCTTGGAATACTGGAGGAGATGGATCATCAGTCAGTG
GCGCCGAATGTGGTCAGCTATACGCTGGCGATGGAGGCATGTGGAAGGGG
AGGACAATGGCAGTCTGCGTTGGGGGTGTTGAATGAAATGACTGTACGAG
GGGTGCCGCTTGATTCGAAGGCGTGTCAGACTGCAATTGATGTGTGTGCG
AAAGTGCAGGATTGGAATAAGGCTCTGAGTTTGCTGCGCGAGGTGGGTGG
ACGAGGGAATGATGGTTGTGCGGCTGAGAGCAGCAGCAGCAGTAATAGTA
ATGTCGTGACGAGAGGATTGTATGAGCGGGCCATGGCTGCGTTTGGCAAG
GCGGGAGAGTGGGAGAAAGTTTTGTGGTTACTTGAGAGGACGGAGAACCC
TGATCGGAAAGCGACGAACGTGGCCATGCGTGCATGTGCGCATGCTGGGA
GGTGGGAGGAAGCTTTGGGGTTGCTGCAGAACATGACAGCACAGGGGTTG
AGTCCTGATGAGTGGAGCTACAATACTGCGATTCACGCGTGTGCCCAGGC
AGGACAAGCAGGACAGGCCTTGGCTTTGCTTAAAGAGATGGATGAAGAAA
AGGTTGCGCCAGATGTGGTGAGTTACACAACAGCAATGGATGCATGCGCC
TCTGTTGGAGATGTGGACACGGCCCAGTGCTTATTGACGGAGATGGTAGA
AAGGGGGGTGATACCTAATCATCGTAGTTTCAATGCTATTATGAGTGCGT
ACGGAAACGCCGGGCAGGCAACTGAAGCGATTGCTATGCTGGGTCAGATG
GCAGAGCATGGGCTGGCCCCGGACGTGAAGAGCTATACACTCGCGATGGA
TATTTGCTTGAGACAGGGCCTCTGGCAGGTGGCGTTGAAAATTGTGGACC
GCATGCGGGCAACATTTGTGAGGCTGGATGCAATTTCGTACGGGAAGGCC
ATTTACGCTGCACATATTGGGCATCAGTGGGAGGTGGCGGTGGAGTTTTT
GGATGAAATGGTGGATGAGGGATGGTTGCCGAGCCATCGAAGCTACACCA
TGGTGGTGGAGGCATGTCGTCGCGCGGGGGAGTCACGGCTGGCGGAGGAA
GTGGGACGACGCTGGGCTCGAGATAAGGAGCGGTTGGCTCGGGCAAAGCT
ACTGGATGGGGGAAATGATGGAAGGAGCAGGCCGATGTATGGGAATGGGA
AAGGAAGGAAGAGTAGCAATGGCAGCAACGGCTACGGCATCAGCGACATA
AACACGGATTTTTCGAGCCCATTGCGCCAGGCCTACATATCGAAATCGCG
CGGGCAGCGGCAGCAACAACAGCAACAGCAGCATCAGCAGCAGCGTCTCG
GCTCCTCAACAAGTAATCCTTCATCCGCTTCCAACTCAGCTAGTTTTCTG
TCACGCCCGCAACCACCTCCTTCTGGACTCGGCCCTCAATTTCCTTTTCA
ACCCAAGCGGTAA

Coding sequence (CDS) from alignment at scaffold_3:354835..357447+

>mRNA_136 ID=mRNA_136|Name=jgi.p|Nanoce1779_2|576340|organism=Nannochloropsis oceanica|type=CDS|length=2613bp|location=Sequence derived from alignment at scaffold_3:354835..357447+ (Nannochloropsis oceanica)
ATGGACTGTTGCGCCAAGGTAGGGCAATGGGAGGCAGCCTTGACGTTGAT
TCCTGAGATGGAATCGGCGGGGTTGAGGCCGGATCGGGTAGCCCTTAATA
CCGCGATTGATGCTTGTGCGAAGGGAGGGCAGTGGCAACGGGCGTTGGAG
ATTCTAAAAGGGATGGATGAGCCGAACTTGGTCAGTTATAACAGTGCCTT
GGATTCATGTGCCAAGGGGGGGAGATGGAAGGAGGCCATGGACCTATTGG
AGGAGATGCATGCACAGGCGAGGAAGGGGGGGAAGATGAAGAAGCAGCAG
GAGAGGAAGAGCAGTGGTATTAGTAGTAGTGACAGTAGCGACAGCAGCAG
TGGCACCAAGAGCAGCAACAATGCTCCGGAATGTCGGAGTGGGATAAAAG
CTGCTGTGTGGCCCAATATCATTTCATACAACACTGTGATTGAGGCATGT
GCTAAGAAAGCTAAGTACGAAGAGGCCTTGCTCGTCCTGCGCTCCATGCG
AGGAAAAAAATCTCCTGCTGCTGCTGCTGCTGCTGCCCCTGTCACCACTC
GTGGTCGGAACAATACGACAAACAGTAGGAAAAAGATGCGTCTTCATCAA
CCCCACCCCTACACCCCTGAACCCGACGTTGTGTCCTACAATTCTGCCAT
TAAGGCATGTGGTAGGGCTGGACAGTGGAAGCTCGCCCTTGTCCTTTTCT
CCGAGATGAAGCAGCCAACCACCGCCACCACCAGCAAGAACAACACCAAC
AGCAGCAGTAGCAGCAGCAAGCGAGGCAGCAGCAACAATAGTATGAATGT
TCCCCCTGAAATCATGACCTACAATGCGGTCATCGCCGCCTGTGCCAAAT
CTGGCCGCCTTAATGAAGCCCTGGATCTCCTGAGGGAATGTGGAGAAGCC
TCAAACGTGGTCACCTACAATTCAGCAATGCAAGCCTGTTGCGCAGGAGG
AAGGGCCGATCTCGCCCTGCAGCTGCTCCAGGTCATGAAAGCCAATGGCG
TGGAGCCTGATGTAGTAAGCTACACGACTGTGATGCAACGGTCTTCTGTG
GATGTTGCTACTGGAGTTATGAATCGCATGCGGGCCGCGGGGTTGAAAGT
GGGGGTGGTGACGTACAATTCGTTATTGAATGCTTGTGCGCGGGAGGGAG
ACTGGCGGACGGCCCTTGGAATACTGGAGGAGATGGATCATCAGTCAGTG
GCGCCGAATGTGGTCAGCTATACGCTGGCGATGGAGGCATGTGGAAGGGG
AGGACAATGGCAGTCTGCGTTGGGGGTGTTGAATGAAATGACTGTACGAG
GGGTGCCGCTTGATTCGAAGGCGTGTCAGACTGCAATTGATGTGTGTGCG
AAAGTGCAGGATTGGAATAAGGCTCTGAGTTTGCTGCGCGAGGTGGGTGG
ACGAGGGAATGATGGTTGTGCGGCTGAGAGCAGCAGCAGCAGTAATAGTA
ATGTCGTGACGAGAGGATTGTATGAGCGGGCCATGGCTGCGTTTGGCAAG
GCGGGAGAGTGGGAGAAAGTTTTGTGGTTACTTGAGAGGACGGAGAACCC
TGATCGGAAAGCGACGAACGTGGCCATGCGTGCATGTGCGCATGCTGGGA
GGTGGGAGGAAGCTTTGGGGTTGCTGCAGAACATGACAGCACAGGGGTTG
AGTCCTGATGAGTGGAGCTACAATACTGCGATTCACGCGTGTGCCCAGGC
AGGACAAGCAGGACAGGCCTTGGCTTTGCTTAAAGAGATGGATGAAGAAA
AGGTTGCGCCAGATGTGGTGAGTTACACAACAGCAATGGATGCATGCGCC
TCTGTTGGAGATGTGGACACGGCCCAGTGCTTATTGACGGAGATGGTAGA
AAGGGGGGTGATACCTAATCATCGTAGTTTCAATGCTATTATGAGTGCGT
ACGGAAACGCCGGGCAGGCAACTGAAGCGATTGCTATGCTGGGTCAGATG
GCAGAGCATGGGCTGGCCCCGGACGTGAAGAGCTATACACTCGCGATGGA
TATTTGCTTGAGACAGGGCCTCTGGCAGGTGGCGTTGAAAATTGTGGACC
GCATGCGGGCAACATTTGTGAGGCTGGATGCAATTTCGTACGGGAAGGCC
ATTTACGCTGCACATATTGGGCATCAGTGGGAGGTGGCGGTGGAGTTTTT
GGATGAAATGGTGGATGAGGGATGGTTGCCGAGCCATCGAAGCTACACCA
TGGTGGTGGAGGCATGTCGTCGCGCGGGGGAGTCACGGCTGGCGGAGGAA
GTGGGACGACGCTGGGCTCGAGATAAGGAGCGGTTGGCTCGGGCAAAGCT
ACTGGATGGGGGAAATGATGGAAGGAGCAGGCCGATGTATGGGAATGGGA
AAGGAAGGAAGAGTAGCAATGGCAGCAACGGCTACGGCATCAGCGACATA
AACACGGATTTTTCGAGCCCATTGCGCCAGGCCTACATATCGAAATCGCG
CGGGCAGCGGCAGCAACAACAGCAACAGCAGCATCAGCAGCAGCGTCTCG
GCTCCTCAACAAGTAATCCTTCATCCGCTTCCAACTCAGCTAGTTTTCTG
TCACGCCCGCAACCACCTCCTTCTGGACTCGGCCCTCAATTTCCTTTTCA
ACCCAAGCGGTAA

Synonyms

Publications