jgi.p|Nanoce1779_2|571859, mRNA_1359 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|571859
Unique Name	mRNA_1359
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2461
Alignment location	scaffold_1:378843..381303 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	571945
Track	FilteredModels2
ProteinId	571859

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:378843..381303 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|571859	gene_1359	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|571859	mRNA_1359-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1359	CDS_1359	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:378843..381303-
coding sequence from alignment at scaffold_1:378843..381303-

mRNA sequence

>mRNA_1359 ID=mRNA_1359|Name=jgi.p|Nanoce1779_2|571859|organism=Nannochloropsis oceanica|type=mRNA|length=2461bp
CAGCTACAGCAACATCTACATCTTCCGTCAAGGAATATGGCGGATGCGTC
GGGCGTGGCCAGCCTCAGTCTGCAGGACAAGGAGCCGGCGGTGGAGATGG
CAGCTGGCGCCGAGGTGGGTGAAAATGCCTCCTTGGCCAAGCTCCAGGAG
CTGAACGTTGCATTGAAGCTCTATCAACACCCGGAGGCCACTACCATAGA
TGAGCAAGTGCAACACGTGGGGCATTTACATGGGGTCCTGACGAAGAATT
TGTTGCTCCGCGATAAGAAGATTGGGACGTTTTTAGTGACGGCCTTGCAC
GACCGCCCGACGGACACCAAGACTCTGGCGAAGCTTCTCAAGCTAGGCGG
AAAAGCCAATTTGCGTTTCGCCGACGAGAAAACATTGGAATCCTTGCTTA
AGGTAAAGCGTGGGGCCGTGAGCGCCTTGGCTGTGCTAAACGACACAGAG
AACGCCGTGACCCTTGCGATTGACAAGGCGCTTCTGGAGCAATCCACCAT
TAACCTCCATCCCCTCCGCAACGACCGTACCGTCTCCATCCCCGCCGCCG
CCCTCCTCACCTATCTCAAAGCTGTGGGCCACGAGCCCGTCGTTTTGGAC
TTCGATTCCGTCCCTGCTCCTGCGCCTACTGCTGCTCCTGCCAAAAAGGA
TAAGAAGAGCAATGGCAATTGTGAACGGGAAGATGGCGGGGCCGCAGCAG
CGAAGAAGACGGCAACCGTTGTGCCGGGAGGGACTTTATTGGGCATTGAC
GTGAGCAAGAAGGACAATTTTGCCTTGTGGTATACACGAGTCATTACCTA
TAGTGAGATGATTGATTATTATGACATTTCCGGATGTTATATTTTGAGGC
CTTGGGCTTATAGCATGTGGGAGAGCATTCAGAGGTGGTTAGACGCGGAG
ATTAAGGAGCTAGGTGTAGAGAATGCTTATTTCCCTTTGTTTGTCTCGAA
GGGGGCGTTGGAGCGGGAGAAGGATCATGTGGAGGGGTTTGCGCCGGAAG
TGGCGTGGGTCACCAAGTCGGGGGACACAGACCTGCCGGAGCCGATTGCC
GTCCGCCCGACCAGCGAAACGATCATGTACCCCCTGTTTAAGAAATGGAT
TCGATCGCACCGGGACTTGCCCCTCTGTTTGAACCAGTGGAGTAACGTGG
TCAGGTGGGAATTCAAGTATCCCACGCCCTTCCTCCGCTCCCGGGAGTTC
TTGTGGCAAGAAGGCCACACCGCGCACGCCTCCTTCGATGAGTCCCAACA
GATGGTCCGGGACATCCTCGACCTCTACAAGCAGGTGTATCAAGATCTAC
TCGCTGTTCCTGTCATCCAAGGCCGCAAGACGGAAATGGAACGTTTTCCC
GGTGGGGATATCACAACCACCGTCGAGGCCTATATTCATGGGTCCGGCCG
ATCAATCCAAGGAGCGACCAGTCATAATTTGGGACAGAATTTCGGAAAGA
TGTTCGATATTCAGTACGAGGATAAGGCGGGGGGCCATGCGATCCCGTGG
CAGACTTCGTGGGGTATCACCACGAGGAGTATCGGTGTGATGGTTATGGC
GCATGGAGACGACAAGGGCCTGGTTCTGCCGCCTCGAGTGGCACCTAAGC
AGGTAGTGGTTATTCCGATTGTAAAGGCGAGCTTGTCCATGGAGAAGAAG
GAGGCGCTGCAAGCTTATGCGATGCGACTGGTCGCTAGTTTGAAGAGGGG
GAAGGTTAGGGTGCATTTGGATGATCGCGATAACTATACACCTGGGTGGA
AATATAACCACTGGGAGCAGAAGGGTGTGCCATTGCGGTTGGAGATTGGG
CCGTTGGACTTGGAAAAAGGGACGGTGAGGGTGGTGAGGCGTGATGATGG
CTCGAAGGAGGATATGGCAGAGGGGGTGGTTGTTGAGACAGTGCTGCAGC
GGTTGAACCAGATCCATAAGGACATGTTCGAGAGGTGCAAGGCACAGAGG
GACGAGAAGCTGGTTCGAGTGACCGAATGGAAGGATTTTGTCCCTGCGCT
GGAGAAAAAATGCATTGTGTTGACGCCTTTTGTGAATGAGACGGAGTGGG
AGGAGGAGGTGAAGCGAAGGAGCCGGGAGGAGGCCTTGGCGGGGGAGGCG
GAGGATGATCGGACGGCGACATCGGTTGCAGCTAAAACTTTGTGCATTCC
CTTTGATCAGCCGGAGTTGCCTGCGGGAACAAAGTGCTTTGTGAGTGGGA
AGGAGGCGACGTGTTGGGTGTTGTGGGGGAGGAGTTATTAGGTTGAAAGA
AACAGGGACGGGGGAGATTGTGTTTTGTTGGCACAAAAAAAGATTTGGAT
AGGGAAGATAGTTTTAGGGCAGAAGACTGGTGGAGGACACAGGGAGTGGC
GTACAGCTGGGAGCGGAGGGAGATAAGCAACTTGCCCTATCCTCGTTCCG
ATTTCGCCGGGCACAGAGCGGATAGCAATTAAAAAGCACAAAGGACGTAG
TGTGATCAAAA

protein sequence of jgi.p|Nanoce1779_2|571859

>mRNA_1359-protein ID=mRNA_1359-protein|Name=jgi.p|Nanoce1779_2|571859|organism=Nannochloropsis oceanica|type=polypeptide|length=735bp
MADASGVASLSLQDKEPAVEMAAGAEVGENASLAKLQELNVALKLYQHPE
ATTIDEQVQHVGHLHGVLTKNLLLRDKKIGTFLVTALHDRPTDTKTLAKL
LKLGGKANLRFADEKTLESLLKVKRGAVSALAVLNDTENAVTLAIDKALL
EQSTINLHPLRNDRTVSIPAAALLTYLKAVGHEPVVLDFDSVPAPAPTAA
PAKKDKKSNGNCEREDGGAAAAKKTATVVPGGTLLGIDVSKKDNFALWYT
RVITYSEMIDYYDISGCYILRPWAYSMWESIQRWLDAEIKELGVENAYFP
LFVSKGALEREKDHVEGFAPEVAWVTKSGDTDLPEPIAVRPTSETIMYPL
FKKWIRSHRDLPLCLNQWSNVVRWEFKYPTPFLRSREFLWQEGHTAHASF
DESQQMVRDILDLYKQVYQDLLAVPVIQGRKTEMERFPGGDITTTVEAYI
HGSGRSIQGATSHNLGQNFGKMFDIQYEDKAGGHAIPWQTSWGITTRSIG
VMVMAHGDDKGLVLPPRVAPKQVVVIPIVKASLSMEKKEALQAYAMRLVA
SLKRGKVRVHLDDRDNYTPGWKYNHWEQKGVPLRLEIGPLDLEKGTVRVV
RRDDGSKEDMAEGVVVETVLQRLNQIHKDMFERCKAQRDEKLVRVTEWKD
FVPALEKKCIVLTPFVNETEWEEEVKRRSREEALAGEAEDDRTATSVAAK
TLCIPFDQPELPAGTKCFVSGKEATCWVLWGRSY*

mRNA from alignment at scaffold_1:378843..381303-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1359 ID=mRNA_1359|Name=jgi.p|Nanoce1779_2|571859|organism=Nannochloropsis oceanica|type=mRNA|length=2461bp|location=Sequence derived from alignment at scaffold_1:378843..381303- (Nannochloropsis oceanica)
CAGCTACAGCAACATCTACATCTTCCGTCAAGGAATATGGCGGATGCGTC
GGGCGTGGCCAGCCTCAGTCTGCAGGACAAGGAGCCGGCGGTGGAGATGG
CAGCTGGCGCCGAGGTGGGTGAAAATGCCTCCTTGGCCAAGCTCCAGGAG
CTGAACGTTGCATTGAAGCTCTATCAACACCCGGAGGCCACTACCATAGA
TGAGCAAGTGCAACACGTGGGGCATTTACATGGGGTCCTGACGAAGAATT
TGTTGCTCCGCGATAAGAAGATTGGGACGTTTTTAGTGACGGCCTTGCAC
GACCGCCCGACGGACACCAAGACTCTGGCGAAGCTTCTCAAGCTAGGCGG
AAAAGCCAATTTGCGTTTCGCCGACGAGAAAACATTGGAATCCTTGCTTA
AGGTAAAGCGTGGGGCCGTGAGCGCCTTGGCTGTGCTAAACGACACAGAG
AACGCCGTGACCCTTGCGATTGACAAGGCGCTTCTGGAGCAATCCACCAT
TAACCTCCATCCCCTCCGCAACGACCGTACCGTCTCCATCCCCGCCGCCG
CCCTCCTCACCTATCTCAAAGCTGTGGGCCACGAGCCCGTCGTTTTGGAC
TTCGATTCCGTCCCTGCTCCTGCGCCTACTGCTGCTCCTGCCAAAAAGGA
TAAGAAGAGCAATGGCAATTGTGAACGGGAAGATGGCGGGGCCGCAGCAG
CGAAGAAGACGGCAACCGTTGTGCCGGGAGGGACTTTATTGGGCATTGAC
GTGAGCAAGAAGGACAATTTTGCCTTGTGGTATACACGAGTCATTACCTA
TAGTGAGATGATTGATTATTATGACATTTCCGGATGTTATATTTTGAGGC
CTTGGGCTTATAGCATGTGGGAGAGCATTCAGAGGTGGTTAGACGCGGAG
ATTAAGGAGCTAGGTGTAGAGAATGCTTATTTCCCTTTGTTTGTCTCGAA
GGGGGCGTTGGAGCGGGAGAAGGATCATGTGGAGGGGTTTGCGCCGGAAG
TGGCGTGGGTCACCAAGTCGGGGGACACAGACCTGCCGGAGCCGATTGCC
GTCCGCCCGACCAGCGAAACGATCATGTACCCCCTGTTTAAGAAATGGAT
TCGATCGCACCGGGACTTGCCCCTCTGTTTGAACCAGTGGAGTAACGTGG
TCAGGTGGGAATTCAAGTATCCCACGCCCTTCCTCCGCTCCCGGGAGTTC
TTGTGGCAAGAAGGCCACACCGCGCACGCCTCCTTCGATGAGTCCCAACA
GATGGTCCGGGACATCCTCGACCTCTACAAGCAGGTGTATCAAGATCTAC
TCGCTGTTCCTGTCATCCAAGGCCGCAAGACGGAAATGGAACGTTTTCCC
GGTGGGGATATCACAACCACCGTCGAGGCCTATATTCATGGGTCCGGCCG
ATCAATCCAAGGAGCGACCAGTCATAATTTGGGACAGAATTTCGGAAAGA
TGTTCGATATTCAGTACGAGGATAAGGCGGGGGGCCATGCGATCCCGTGG
CAGACTTCGTGGGGTATCACCACGAGGAGTATCGGTGTGATGGTTATGGC
GCATGGAGACGACAAGGGCCTGGTTCTGCCGCCTCGAGTGGCACCTAAGC
AGGTAGTGGTTATTCCGATTGTAAAGGCGAGCTTGTCCATGGAGAAGAAG
GAGGCGCTGCAAGCTTATGCGATGCGACTGGTCGCTAGTTTGAAGAGGGG
GAAGGTTAGGGTGCATTTGGATGATCGCGATAACTATACACCTGGGTGGA
AATATAACCACTGGGAGCAGAAGGGTGTGCCATTGCGGTTGGAGATTGGG
CCGTTGGACTTGGAAAAAGGGACGGTGAGGGTGGTGAGGCGTGATGATGG
CTCGAAGGAGGATATGGCAGAGGGGGTGGTTGTTGAGACAGTGCTGCAGC
GGTTGAACCAGATCCATAAGGACATGTTCGAGAGGTGCAAGGCACAGAGG
GACGAGAAGCTGGTTCGAGTGACCGAATGGAAGGATTTTGTCCCTGCGCT
GGAGAAAAAATGCATTGTGTTGACGCCTTTTGTGAATGAGACGGAGTGGG
AGGAGGAGGTGAAGCGAAGGAGCCGGGAGGAGGCCTTGGCGGGGGAGGCG
GAGGATGATCGGACGGCGACATCGGTTGCAGCTAAAACTTTGTGCATTCC
CTTTGATCAGCCGGAGTTGCCTGCGGGAACAAAGTGCTTTGTGAGTGGGA
AGGAGGCGACGTGTTGGGTGTTGTGGGGGAGGAGTTATTAGGTTGAAAGA
AACAGGGACGGGGGAGATTGTGTTTTGTTGGCACAAAAAAAGATTTGGAT
AGGGAAGATAGTTTTAGGGCAGAAGACTGGTGGAGGACACAGGGAGTGGC
GTACAGCTGGGAGCGGAGGGAGATAAGCAACTTGCCCTATCCTCGTTCCG
ATTTCGCCGGGCACAGAGCGGATAGCAATTAAAAAGCACAAAGGACGTAG
TGTGATCAAAA

Coding sequence (CDS) from alignment at scaffold_1:378843..381303-

>mRNA_1359 ID=mRNA_1359|Name=jgi.p|Nanoce1779_2|571859|organism=Nannochloropsis oceanica|type=CDS|length=2205bp|location=Sequence derived from alignment at scaffold_1:378843..381303- (Nannochloropsis oceanica)
ATGGCGGATGCGTCGGGCGTGGCCAGCCTCAGTCTGCAGGACAAGGAGCC
GGCGGTGGAGATGGCAGCTGGCGCCGAGGTGGGTGAAAATGCCTCCTTGG
CCAAGCTCCAGGAGCTGAACGTTGCATTGAAGCTCTATCAACACCCGGAG
GCCACTACCATAGATGAGCAAGTGCAACACGTGGGGCATTTACATGGGGT
CCTGACGAAGAATTTGTTGCTCCGCGATAAGAAGATTGGGACGTTTTTAG
TGACGGCCTTGCACGACCGCCCGACGGACACCAAGACTCTGGCGAAGCTT
CTCAAGCTAGGCGGAAAAGCCAATTTGCGTTTCGCCGACGAGAAAACATT
GGAATCCTTGCTTAAGGTAAAGCGTGGGGCCGTGAGCGCCTTGGCTGTGC
TAAACGACACAGAGAACGCCGTGACCCTTGCGATTGACAAGGCGCTTCTG
GAGCAATCCACCATTAACCTCCATCCCCTCCGCAACGACCGTACCGTCTC
CATCCCCGCCGCCGCCCTCCTCACCTATCTCAAAGCTGTGGGCCACGAGC
CCGTCGTTTTGGACTTCGATTCCGTCCCTGCTCCTGCGCCTACTGCTGCT
CCTGCCAAAAAGGATAAGAAGAGCAATGGCAATTGTGAACGGGAAGATGG
CGGGGCCGCAGCAGCGAAGAAGACGGCAACCGTTGTGCCGGGAGGGACTT
TATTGGGCATTGACGTGAGCAAGAAGGACAATTTTGCCTTGTGGTATACA
CGAGTCATTACCTATAGTGAGATGATTGATTATTATGACATTTCCGGATG
TTATATTTTGAGGCCTTGGGCTTATAGCATGTGGGAGAGCATTCAGAGGT
GGTTAGACGCGGAGATTAAGGAGCTAGGTGTAGAGAATGCTTATTTCCCT
TTGTTTGTCTCGAAGGGGGCGTTGGAGCGGGAGAAGGATCATGTGGAGGG
GTTTGCGCCGGAAGTGGCGTGGGTCACCAAGTCGGGGGACACAGACCTGC
CGGAGCCGATTGCCGTCCGCCCGACCAGCGAAACGATCATGTACCCCCTG
TTTAAGAAATGGATTCGATCGCACCGGGACTTGCCCCTCTGTTTGAACCA
GTGGAGTAACGTGGTCAGGTGGGAATTCAAGTATCCCACGCCCTTCCTCC
GCTCCCGGGAGTTCTTGTGGCAAGAAGGCCACACCGCGCACGCCTCCTTC
GATGAGTCCCAACAGATGGTCCGGGACATCCTCGACCTCTACAAGCAGGT
GTATCAAGATCTACTCGCTGTTCCTGTCATCCAAGGCCGCAAGACGGAAA
TGGAACGTTTTCCCGGTGGGGATATCACAACCACCGTCGAGGCCTATATT
CATGGGTCCGGCCGATCAATCCAAGGAGCGACCAGTCATAATTTGGGACA
GAATTTCGGAAAGATGTTCGATATTCAGTACGAGGATAAGGCGGGGGGCC
ATGCGATCCCGTGGCAGACTTCGTGGGGTATCACCACGAGGAGTATCGGT
GTGATGGTTATGGCGCATGGAGACGACAAGGGCCTGGTTCTGCCGCCTCG
AGTGGCACCTAAGCAGGTAGTGGTTATTCCGATTGTAAAGGCGAGCTTGT
CCATGGAGAAGAAGGAGGCGCTGCAAGCTTATGCGATGCGACTGGTCGCT
AGTTTGAAGAGGGGGAAGGTTAGGGTGCATTTGGATGATCGCGATAACTA
TACACCTGGGTGGAAATATAACCACTGGGAGCAGAAGGGTGTGCCATTGC
GGTTGGAGATTGGGCCGTTGGACTTGGAAAAAGGGACGGTGAGGGTGGTG
AGGCGTGATGATGGCTCGAAGGAGGATATGGCAGAGGGGGTGGTTGTTGA
GACAGTGCTGCAGCGGTTGAACCAGATCCATAAGGACATGTTCGAGAGGT
GCAAGGCACAGAGGGACGAGAAGCTGGTTCGAGTGACCGAATGGAAGGAT
TTTGTCCCTGCGCTGGAGAAAAAATGCATTGTGTTGACGCCTTTTGTGAA
TGAGACGGAGTGGGAGGAGGAGGTGAAGCGAAGGAGCCGGGAGGAGGCCT
TGGCGGGGGAGGCGGAGGATGATCGGACGGCGACATCGGTTGCAGCTAAA
ACTTTGTGCATTCCCTTTGATCAGCCGGAGTTGCCTGCGGGAACAAAGTG
CTTTGTGAGTGGGAAGGAGGCGACGTGTTGGGTGTTGTGGGGGAGGAGTT
ATTAG

Synonyms

Publications